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Biomedical subjects

A Chandrasekaran

Publications and source records attributed to A Chandrasekaran.

At least 19 recordsLinked to original sources
PubMed2007

Effects of ertiprotafib on hepatic cytochrome P450 and peroxisomal enzymes in rats and dogs, and in rat and human primary hepatocytes.

Ertiprotafib (ERTI) significantly increased liver weights in male and female rats, and moderately increased liver weights in male dogs after treatment for 28 days. The present study tested the hypotheses that the organ weight increases were associated with peroxisome proliferation in rats and induction of hepatic enzymes in rats and dogs, and would have limited impacts on humans. At a dosage of 200 mg kg-1 day-1, CYP4A was induced by tenfold in male rats and 2.4-fold in female rats. In male rats, CYP2B was induced by 1.2-fold and CYP3A was induced by 1.7-fold. Palmitoyl CoA oxidase was induced by 5.1-fold in male rats and 2.9-fold in female rats; carnitine acetyltransferase was induced by 10.4-fold in male rats and 5.2-fold in female rats. CYP3A, CYP4A and peroxisomal enzymes were not induced in dogs at 150/200 mg kg-1 day-1. ERTI at 50 microM markedly induced the mRNA level of CYP4A by up to fivefold in rat hepatocytes, but not in human primary hepatocytes. In conclusion, the liver weight increases observed in rats treated with ERTI appears to be due to rodent-specific peroxisome proliferation and the substantial induction of CYP4A1. ERTI is not a potent P450 inducer in dogs or in human hepatocytes. Therefore, ERTI is not expected to exert any significant effects on hepatic drug-metabolizing enzymes in humans.

Animals↗
PubMed2006

Biologically relevant phosphoranes: synthesis and structural characterization of glucofuranose-derived phosphoranes with penta- and hexacoordination at phosphorus.

Carbohydrate-based phosphoranes were synthesized by reacting the appropriate diphenol with phosphorus trichloride followed by the addition of chloralose to form 1 and by the addition of isopropylidene-D-glucofuranose to form 2 and 3. Phosphorane 4 was obtained by reacting 1,2-O-isopropylidene-alpha-D-glucofuranosyl-3,5,6-phosphite (13) with a diphenol. For the synthesis of 5-9, the appropriate phosphite was reacted with isopropylidene-glucofuranose. X-ray analyses of 1-9 were carried out successfully. Hexacoordinated structures resulted via oxygen donor action at phosphorus in the cases of phosphoranes 1-3 and via sulfur donor action for phosphoranes 4-6. Trigonal bipyramidal structures formed for 7-9 with the carbohydrate components occupying axial-equatorial sites. The eight-membered ring of the diphenol moiety with weak or no donor groups in 7-9 occupied diequatorial sites of the trigonal bipyramid. Solution NMR data are in agreement with the assigned solid-state structures. Isomerism between penta- and hexacoordination is present in solution for 7. The isomerism observed for 7 and our previous study showing a rapid exchange process that reorients the carbohydrate component of the trigonal bipyramidal phosphorane suggest that these biophosphoranes may serve as models for active sites of phosphoryl-transfer enzymes. At an active site, this type of pseudorotational behavior provides a mechanism that could bring another active site residue into play and account for a means by which some phosphoryl-transfer enzymes express promiscuous behavior.

Carbohydrates↗
PubMed2006

Biologically relevant phosphoranes: structural characterization of glucofuranose- and xylofuranose-based phosphoranes.

Carbohydrate-based phosphoranes were synthesized by reacting 2,2'-ethylidenebis(4,6-di-tert-butylphenyl)fluorophosphite with 1,2-O-isopropylidene-alpha-D-glucofuranose, beta-chloralose, and 1,2-isopropylidene-alpha-D-xylofuranose to form the monocyclic biophosphoranes 1-3, respectively, in the presence of N-chlorodiisopropylamine. Synthesis of the monocyclic biophosphorane 4 was achieved by reacting tris(2,6-di-isopropylphenyl)phosphite with 1,2-O-isopropylidene-alpha-D-glucofuranose in the presence of N-chlorodiisopropylamine. X-ray analysis of 1-4 revealed trigonal bipyramidal structures with the carbohydrate components occupying axial-equatorial sites. An eight-membered ring in 1-3 occupied diequatorial sites of the trigonal bipyramid. Solution and solid state 31P and solution 19F, 1H, and 13C NMR measurements including variable temperature and correlation spectroscopy studies established retention of the solid state structure in solution. A dynamic equilibrium exists among two isomeric forms. These biophosphoranes serve as models for active sites of phosphoryl transfer enzymes. The rapid exchange process reorients the carbohydrate component of the trigonal bipyramidal phosphorane. At an active site, this type of pseudorotational behavior provides a mechanism that could bring another active site residue into play and account for a means by which some phosphoryl transfer enzymes express promiscuous behavior.

Chloralose↗
PubMed2006

Absorption detection of enzymatic reaction using optical microfluidics based intermittent flow microreactor system.

The advantages of integrating microfluidics into photonics-based biosensing for fabricating microreactor type lab-on-a-chip devices carries a lot of advantages, such as smaller sample volume handling, controlled drug delivery and high throughput diagnosis, which is useful for in situ medical diagnosis and point-of-care (POC) testing. A hybrid integrated optical microfluidic system has been developed for the study of single molecules and enzymatic reactions. The method of optical absorption has been employed for biosensing and the feasibility of absorption-based detection on the microfluidic platform has been demonstrated using horseradish peroxidase and hydrogen peroxide, as an example. The results show that the device is useful for the analysis of both the individual chemical specimen and also the study of chemical and biological reaction between two reacting species. The hybrid integration of microfluidics and optical ensembles thus forms the basis for developing the microreactor type lab-on-a-chip device, which would have several important applications in the area of nanobiotechnology.

Absorption↗
PubMed2005

Biologically relevant phosphoranes: structural characterization of a nucleotidyl phosphorane.

The first successful crystal structures of biorelevant nucleoside and carbohydrate-based phosphoranes are reported. Employing thymidine, a nucleotidyl phosphorane was synthesized in 90% yield and was shown by X-ray analysis to possess a trigonal bipyramidal geometry. With the use of 1,2-O-isopropylidene-alpha-d-glucofuranose, a carbohydrate-based phosphorane was formed and similarly found to have a trigonal bipyramidal geometry. NMR studies demonstrated the existence of isomerism in solution associated with the nucleotidyl phosphorane and rapid exchange for the carbohydrate-based phosphorane. The geometrical representations reported here are expected to have significant applications associated with active site mechanisms of phosphoryl transfer enzymes, for example, in DNA, RNA, c-AMP, and others.

Crystallography, X-Ray↗
PubMed2004

Phosphorus-nitrogen donor interaction leading to atrane formation in phosphate and oxyphosphorane compositions. Implications for phosphoryl transfer enzymes(1).

Reaction of aminotriphenols, tris(2-hydroxy-3,5-dimethylbenzyl)amine (E) and tris(2- hydroxy-3-tert-butyl-5-methylbenzyl)amine (F), with triphenylphosphite, tris(p-methoxyphenyl)phosphite, or phenyldiphenoxyphosphane in the presence of N-chlorodiisopropylamine led to the isolation of tetraoxyphosphorane 1, pentaoxyphosphorane 3, phosphate-atrane 2, hexacoordinated pentaoxyphosphorane-atrane 4, and the first hexacoordinated tetraoxyphosphorane-atrane 5. X-ray analysis of 1-3 and 5 were obtained. NMR data is reported and supports that the atrane 4 has the same hexacoordinated structure as 5. Phosphate 2 reveals weak phosphorus-nitrogen donor action whereas the hexacoordinated atranes 4 and 5 have pronounced P-N coordination. The results are used to support amino acid donor action occurring at active sites of phosphoryl transfer enzymes. Increased strength of donor action in the higher-coordinate model activated state compared to that in the substrate phosphate composition should serve as a factor in enhancing enzyme reaction rates.

Catalysis↗
PubMed2003

Influence of hydrogen bonding in competition with lattice interactions on carbonyl coordination at phosphorus. Implications for phosphoryl transfer activated states.

A series of phosphorus compounds containing carboxyl groups that serve as mimics for amino acid residues was synthesized. The series was composed of the phosphonium salts 1A, 1B, and 2, the anionic phosphines 3A and 3B, and the anionic phosphine oxide 4. X-ray structural analysis revealed that P-O coordination occurred in the presence of extensive hydrogen bonding and led to pseudo or regular trigonal bipyramidal geometries. (31)P chemical shifts indicated retention of the basic coordination geometries in solution. The two forms observed for 1 and 3 revealed the influence of hydrogen bonding on the P-O donor interactions while 2 and 4 showed the influence of molecular packing effects in competition with hydrogen bonding interactions. The results suggest that phosphoryl transfer enzyme mechanisms should benefit by taking into account P-O donor interactions by residues at active sites that can be manipulated by hydrogen bonding and molecular packing effects in enhancing nucleophilic attack at phosphorus centers.

Journal Article↗
PubMed2002

Pseudoheptacoordination and pseudohexacoordination in tris(2-N,N-dimethylbenzylamino)phosphane.

The phosphane (C(6)H(4)-2-CH(2)NMe(2))(3)P (1) upon recrystallization from various solvents yielded the structurally different forms 1A, 1C, 1B(1), and 1B(2). Phosphane oxide (C(6)H(4)-2-CH(2)NOMe(2))(3)PO (2) was obtained from 1 by oxidation with hydrogen peroxide. X-ray analysis provided molecular structures for 1A, 1B(1), 1B(2), and 2. Phosphanes 1A and 1B(1) have pseudohexacoordinate frameworks as a result of the formation of two P-N donor interactions, 1B(2) has a pseudoheptacoordinate geometry due to the presence of three P-N interactions, and 2 resides in a tetrahedral geometry. The presence of the flexible dimethylaminobenzyl group in 1A, 1C, 1B(1), and 1B(2) is reasoned to be responsible for this variation in coordination geometry. Phosphane oxide 2 has very strong donor oxygen atoms from N-oxide groups but they are involved in competition with the presence of hydrogen bonding, which results in the lack of donor coordination. High-resolution (1)H, (13)C, and (31)P NMR measurements are also reported. The results provide evidence for the low-energy threshold required to allow hypercoordinated phosphorus to alter coordination geometry.

Journal Article↗
PubMed2002

Conversion of tricoordinate to hexacoordinate phosphorus. Formation of a phosphorane-phosphatrane system.

Reaction of RPCl(2) with tris(2-hydroxy-3-tert-butyl-5-methylbenzyl)amine (4) led to the formation of a tricoordinated phosphonite (1) when R = Ph and to a hexacoordinated phosphorane-phosphatrane (2) when R = Et. The X-ray structures showed that the unreacted hydroxyl group in 1 oxidatively added to phosphorus in 2 leading to the formation of three additional bonds, a P[bond]O, a P[bond]H, and a P[bond]N linkage. In solution, (31)P measurements assisted by solid-state (31)P measurements revealed that each of the compounds existed in both structural forms. VT (31)P established equilibria where the solid-state structures predominated in each case. This is the first example of a conversion of three-coordinate to six-coordinate phosphorus on going from the solid to the solution state and the existence of these two disparate geometries in equilibrium with one another in solution. In the absence of steric protection with the use of an analogous amine (5) without tert-butyl groups, a hydrolysis reaction occurred with PhPCl(2). X-ray analysis revealed an anionic phenylphosphinate structure (3) hydrogen bonded in a cage-like arrangement with the protonated amine. Similar hydrolysis reactions take place with 1 and 2 but much more slowly.

Journal Article↗
PubMed2002

P-O donor action from carboxylate anions with phosphorus in the presence of hydrogen bonding. A model for phosphoryl-transfer enzymes.

A series of phosphorus compounds (1-3) containing anionic carboxylate groups were synthesized by treatment of the respective neutral precursor acid forms B-D with amines, which also served to introduce hydrogen-bonding interactions. The compounds, subjected to X-ray structure analysis, resulted in hexacoordinated anionic phosphoranates 1A and 1B, a pseudo-trigonal-bipyramidal anionic phosphine (2), and a trigonal-bipyramidal anionic phosphine oxide (3). The structures revealed that P-O donor coordination was present in all members of the anionic series 1-3 and resulted in stronger interactions than existed in the precursor neutral acid forms B-D as measured by the presence of shorter P-O distances. Evaluation of the energies of the donor interactions relative to the energies of the hydrogen bonds that were present showed that the donor energies now exceeded the hydrogen bond strengths. (31)P chemical shifts indicated that the basic coordination geometries were retained in solution. Both 1A and 1B are chiral and exist as racemates. The results suggest that mechanisms of phosphoryl-transfer enzymes should benefit by taking into account donor interactions at phosphorus by residues at active sites in addition to the inclusion of hydrogen bonding. Reference is made to specific phosphoryl-transfer enzymes.

Binding Sites↗
PubMed2001

Coordination of carbonyl and carboxyl oxygen atoms with phosphorus in the presence of hydrogen bonding. P-O donor action.

A series of phosphorus compounds 1-5 containing carbonyl or carboxyl groups was obtained and subjected to X-ray analysis. Syntheses of the phosphoranes 1 and 5 were effected by oxidation reactions using potassium permaganate, while the phosphine oxide 2 was obtained by oxidation with hydrogen peroxide. The readily available phosphines 3 and 4 were included in the study. The structures revealed that P-O coordination occurred for 1-3 in the presence of extensive hydrogen bonding and led to trigonal bipyramidal geometries. A similar structure was observed for 4 in the absence of hydrogen bonding. (31)P chemical shifts indicate retention of the basic coordination geometries in solution. Consideration of the chirality of the phosphoranes 1 and 5 leads to a pair of mirror images that are possible in solution but exist in preferred isomeric forms in the crystalline state. Evaluation of the energies of two competing bonding types indicated a range for P-O coordination above and below the hydrogen bond energy. The results suggest that phosphoryl transfer enzyme mechanisms should benefit by taking into account donor interactions to phosphorus by residues at active sites in addition to the inclusion of hydrogen bonding interactions.

Journal Article↗
PubMed2001

Evidence for the intertwined dimer of the cytochrome bc(1) complex in solution.

To confirm that the cytochrome bc(1) complex exists as a dimer with intertwining Rieske iron-sulfur proteins in solution, four Rhodobacter sphaeroides mutants expressing His-tagged cytochrome bc(1) complexes containing two pairs of cysteine substitutions, one in the interface between the head domain of iron-sulfur protein (ISP) and cytochrome b and the other between the tail domain of ISP and cytochrome b, were generated and characterized. They are: K70C(ISP)/A185C(cytb).P33C(ISP)/G89C(cytb), K70C(ISP)/A185C(cytb).P33C(ISP)/M92C (cytb), K70C (ISP)/A185C(cytb).L34C(ISP)/V64C(cytb), and K70C(ISP)/A185C(cytb).N36C(ISP)/G89C(cytb). The K70C(ISP)/A185C(cytb) cysteine pair cross-links the head domain of ISP and cytochrome b; the P33C(ISP)/G89C(cytb), P33C(ISP)/M92C (cytb), L34C(ISP)/V64C(cytb), and N36C(ISP)/G89C(cytb) cysteine pairs cross-link the tail domain of ISP and cytochrome b. An adduct protein with an apparent molecular mass of 128 kDa containing two cytochrome b and two ISP proteins is detected in the K70C(ISP)/A185C(cytb).P33C(ISP)/G89C(cytb) and K70C(ISP)/A185C(cytb).N36C(ISP)/G89C(cytb) mutant complexes, confirming that the bc(1) complex exists as a dimer with intertwining ISPs. The loss of activity in these two double-cysteine-pair mutant complexes was attributed to the disulfide bond between the head domain of ISP and cytochrome b and not the one between the tail domain of ISP and cytochrome b.

Base Sequence↗
PubMed2001

Evaluation of T cell receptor gene rearrangement excision circles after antiretroviral therapy in children infected with human immunodeficiency virus.

Immune reconstitution after antiretroviral therapy in human immunodeficiency virus (HIV)infected patients may result from the recovery of thymus function, peripheral redistribution, or decreased T cell destruction. This study investigated levels of T cell receptor gene rearrangement excision circles (TRECs) as a measure of recent thymic emigrant cells in peripheral blood lymphocytes of 50 HIV-infected infants and children who were followed-up for 40 months after the start or change of antiretroviral therapy. At baseline, patients exhibited fewer TRECs than did uninfected control subjects. The increase in TRECs after antiretroviral therapy was greater in infants than in older HIV-infected children. Of interest, patients who demonstrated discordant responses (i.e., increased CD4 T cell counts without significant virologic suppression) also had substantial gains in TRECs. Furthermore, TRECs correlated positively with the number of CD4 and naive T cells and negatively with age and virus load. Measurement of TRECs may serve as a useful tool for evaluating immune reconstitution in HIV-infected children receiving antiretroviral therapy.

Adolescent↗
PubMed2000

Synthesis and structure of cyclic phosphate, phosphoramidate, phosphonates, and phosphonium salts. Phosphatrane formation.

Reaction of tris(2-hydroxy-3,5-dimethylbenzyl)amine (6) with phosphorus reagents led to the formation of the phosphoramidate, N[CH2(Me2C6H2)O]2PO (1), the phosphate N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OH]P(O)(OPh) (2), the phosphonium salts N[CH2(Me2C6H2)O]3PMe+I- (3A) and N[CH2(Me2C6H2)O]3PMe+I3- (3B), and the phosphonates N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OH]P(O)Me (4) and N[CH2(Me2C6H2)O]2[CH2(Me2C6H2)OSiMe3]P(O)Me (5). X-ray analysis provided molecular structures for all of the compounds. The solid-state structural representations were supported in solution by an analysis of the NCH2 proton NMR patterns. The structures of 3A and 3B show the presence of phosphatranes with weak P-N donor interactions. These represent the first phosphatranes containing all six-membered rings. Variable temperature analysis of the 1H NMR spectra of 3A indicates fluxional behavior whereby a racemic mixture of the chiral phosphonium salt rapidly intraconverts at room temperature. The activation energy for the enantiomeric conversion of the clockwise and anticlockwise orientations of the propeller-like phosphatrane is 11.2 kcal/mol, which is compared to that of the isoelectronic silatrane N[CH2(Me2C6H2)O]3SiMe (E), 10.3 kcal/mol.

Journal Article↗
PubMed1998

Metabolic disposition of 14C-bromfenac in healthy male volunteers.

The metabolic disposition of 14C-bromfenac, an orally active, potent, nonsteroidal, nonnarcotic, analgesic agent was investigated in six healthy male subjects after a single oral 50-mg dose. The absorption of radioactivity was rapid, producing a mean maximum plasma concentration (Cmax) of 4.9 +/- 1.8 microg x equiv/mL, which was reached 1.0 +/- 0.5 hours after administration. Unchanged drug was the major component found in plasma, and no major metabolites were detected in the plasma. Total radioactivity recovered over a 4-day period from four of the six subjects averaged 82.5% and 13.2% of the dose in the urine and feces, respectively. Excretion into urine was rapid; most of the radioactivity was excreted during the first 8 hours. Five radioactive chromatographic peaks, a cyclic amide and four polar metabolites, were detected in 0- to 24-hour urine samples. Similarity of metabolite profiles between humans and cynomolgus monkeys permitted use of this animal model to generate samples after a high dose for structure elucidation. Liquid chromatography/mass spectrometry (LC/MS) analysis of monkey urine samples indicated that the four polar metabolites were two pairs of diastereoisomeric glucuronides whose molecular weight differed by two daltons. Enzyme hydrolysis, cochromatography, and LC/MS experiments resulted in the identification of a hydroxylated cyclic amide as one of the aglycones, which formed a pair of diastereoisomeric glucuronides after conjugation. Data also suggested that a dihydroxycyclic amide formed by the reduction of the ketone group that joins the phenyl rings formed the second pair of diastereoisomeric glucuronides. Further, incubation of various reference standards in control (blank) urine and buffer with and without creatinine indicated that the hydroxy cyclic amide released from enzyme hydrolysis can undergo ex vivo transformations to a condensation product between creatinine and an alpha-keto acid derivative of the hydroxy cyclic amide that is formed by oxidation and ring opening. Further experiments with a dihydroxylated cyclic amide after reduction of the keto function indicated that it too can form a creatinine conjugate.

Adolescent↗
PubMed1997

Detection of antibodies to HIV-1 in serum and saliva.

In this study we report the detection of antibodies to HIV-1 in paired serum and saliva collected from 118 HIV-1 infected patients and 80 normal controls in Madras, South India. Saliva was collected using Omnisal (R) collection device. All the reactive samples were confirmed by Western blot test (WB), while all the control serum and saliva were negative for HIV-1 antibodies. 107 (90.6%) HIV individual's serum and saliva contained antibodies to HIV-1. When these reactive samples were tested by WB test for confirmation the following results were obtained; 68% HIV individuals' paired serum and saliva were positive; while 9% of serum samples were positive and the saliva specimens were negative on WB. 3% of paired samples showed indeterminate Western blot pattern in contrast to 10% of serum showed full WB pattern while the saliva result was indeterminate. It is suggested that saliva testing may be appropriate for surveillance and epidemiological studies. However, if used for individual HIV diagnosis it is imperative to use a confirmatory test.

Blotting, Western↗
PubMed1996

Determination of 17 alpha-dihydroequilenin in rat, rabbit and monkey plasma by high-performance liquid chromatography with fluorimetric detection.

A high-performance liquid chromatographic (HPLC) method with fluorescence detection for the determination of total (unconjugated and conjugated) 17 alpha-dihydroequilenin in male and female rat, female rabbit and male and female rhesus monkey plasma is described here. Plasma sample preparation involved hydrolysis with enzyme (Glusulase), addition of internal standard (14 beta-equilenin) and solvent extraction. The extracts were chromatographed on a C6, 5-microns reversed-phase HPLC column and detection was accomplished with a fluorescence detector operated at an excitation wavelength of 210 nm and an emission wavelength of 370 nm. The assay was linear over a range of 2.5 to 100 ng/ml in male and female rat plasma, and 5 to 500 ng/ml in female rabbit and male and female monkey plasma. The method was specific, accurate and reproducible (percent differences < 14.5; coefficients of variation < 9.5%) in all matrices examined. The applicability of this method was successfully tested by quantifying total plasma concentrations of 17 alpha-dihydroequilenin in ovariectomized female rats, ovariectomized female rabbits and a normal female rhesus monkey receiving 2.0, 8.3 and 0.1 mg/kg, respectively, of 17 alpha-dihydroequilenin sulfate intragastrically.

Animals↗