Biomedical subjects

A Goldbeter

Publications and source records attributed to A Goldbeter.

At least 37 records · Page 2Linked to original sources

PubMed1998

A model for circadian rhythms in Drosophila incorporating the formation of a complex between the PER and TIM proteins.

The authors present a model for circadian oscillations of the Period (PER) and Timeless (TIM) proteins in Drosophila. The model for the circadian clock is based on multiple phosphorylation of PER and TIM and on the negative feedback exerted by a nuclear PER-TIM complex on the transcription of the per and tim genes. Periodic behavior occurs in a large domain of parameter space in the form of limit cycle oscillations. These sustained oscillations occur in conditions corresponding to continuous darkness or to entrainment by light-dark cycles and are in good agreement with experimental observations on the temporal variations of PER and TIM and of per and tim mRNAs. Birhythmicity (coexistence of two periodic regimes) and aperiodic oscillations (chaos) occur in a restricted range of parameter values. The results are compared to the predictions of a model based on the sole regulation by PER. Both the formation of a complex between PER and TIM and protein phosphorylation are found to favor oscillatory behavior. Determining how the period depends on several key parameters allows us to test possible molecular explanations proposed for the altered period in the per(l) and per(s) mutants. The extended model further allows the construction of phase-response curves based on the light-induced triggering of TIM degradation. These curves, established as a function of both the duration and magnitude of the effect of a light pulse, match the phase-response curves obtained experimentally in the wild type and per(s) mutant of Drosophila.

Animals↗

PubMed1997

Desynchronization of cells on the developmental path triggers the formation of spiral waves of cAMP during Dictyostelium aggregation.

Whereas it is relatively easy to account for the formation of concentric (target) waves of cAMP in the course of Dictyostelium discoideum aggregation after starvation, the origin of spiral waves remains obscure. We investigate a physiologically plausible mechanism for the spontaneous formation of spiral waves of cAMP in D. discoideum. The scenario relies on the developmental path associated with the continuous changes in the activity of enzymes such as adenylate cyclase and phosphodiesterase observed during the hours that follow starvation. These changes bring the cells successively from a nonexcitable state to an excitable state in which they relay suprathreshold cAMP pulses, and then to autonomous oscillations of cAMP, before the system returns to an excitable state. By analyzing a model for cAMP signaling based on receptor desensitization, we show that the desynchronization of cells on this developmental path triggers the formation of fully developed spirals of cAMP. Developmental paths that do not correspond to the sequence of dynamic transitions no relay-relay-oscillations-relay are less able or fail to give rise to the formation of spirals.

Animals↗

PubMed1997

Complex intracellular calcium oscillations. A theoretical exploration of possible mechanisms.

Intracellular Ca(2+) oscillations are commonly observed in a large number of cell types in response to stimulation by an extracellular agonist. In most cell types the mechanism of regular spiking is well understood and models based on Ca(2+)-induced Ca(2+) release (CICR) can account for many experimental observations. However, cells do not always exhibit simple Ca(2+) oscillations. In response to given agonists, some cells show more complex behaviour in the form of bursting, i.e. trains of Ca(2+) spikes separated by silent phases. Here we develop several theoretical models, based on physiologically plausible assumptions, that could account for complex intracellular Ca(2+) oscillations. The models are all based on one- or two-pool models based on CICR. We extend these models by (i) considering the inhibition of the Ca(2+)-release channel on a unique intracellular store at high cytosolic Ca(2+) concentrations, (ii) taking into account the Ca(2+)-activated degradation of inositol 1,4,5-trisphosphate (IP(3)), or (iii) considering explicity the evolution of the Ca(2+) concentration in two different pools, one sensitive and the other one insensitive to IP(3). Besides simple periodic oscillations, these three models can all account for more complex oscillatory behaviour in the form of bursting. Moreover, the model that takes the kinetics of IP(3) into account shows chaotic behaviour.

Journal Article↗

PubMed1997

Temperature compensation of circadian rhythms: control of the period in a model for circadian oscillations of the per protein in Drosophila.

The factors affecting the period are examined in a model for circadian oscillations of the period protein (PER) in Drosophila. The model for the circadian clock is based on multiple phosphorylation of PER and on the negative feedback exerted by PER on the transcription of the period (per) gene. The results are used to address the possible bases of the relative invariance of the period of oscillations with respect to temperature. Such a phenomenon, referred to as temperature compensation, represents one of the most conspicuous properties of circadian rhythms.

Animals↗

PubMed1996

The glucose-induced switch between glycogen phosphorylase and glycogen synthase in the liver: outlines of a theoretical approach.

The glucose-induced switch between glycogen phosphorylase and glycogen synthase in the liver is investigated by means of a theoretical approach based on a minimal, bicyclic cascade model involving the reversible phosphorylation of the two enzymes. The aim of the analysis is to evaluate the contribution of different factors to the sequential changes in the activity of glycogen phosphorylase and glycogen synthase observed following the addition of suprathreshold amounts of glucose.

Animals↗

PubMed1996

Arresting the mitotic oscillator and the control of cell proliferation: insights from a cascade model for cdc2 kinase activation.

We consider a minimal cascade model previously proposed for the mitotic oscillator driving the embryonic cell division cycle. The model is based on a bicyclic phosphorylation-dephosphorylation cascade involving cyclin and cdc2 kinase. By constructing stability diagrams showing domains of periodic behavior as a function of the maximum rates of the kinases and phosphatases involved in the two cycles of the cascade, we investigate the role of these converter enzymes in the oscillatory mechanism. Oscillations occur when the balance of kinase and phosphatase rates in each cycle is in a range bounded by two critical values. The results suggest ways to arrest the mitotic oscillator by altering the maximum rates of the converter enzymes. These results bear on the control of cell proliferation.

CDC2 Protein Kinase↗

PubMed1996

Modeling spiral Ca2+ waves in single cardiac cells: role of the spatial heterogeneity created by the nucleus.

Excitation-contraction coupling in cardiomyocytes is known to rely on the Ca(2+)-induced Ca2+ release mechanism. This autoamplification process is also very apparent when voltage-clamped or Ca(2+)-overloaded myocytes exhibit fast-propagating Ca2+ waves. Although most of the fronts are planar, some adopt a spiral shape, revealing additional characteristics about the excitability and structure of the cardiac cell (P. Lipp and E. Niggli, Biophys. J. 65: 2272-2276, 1993: J. Engel, M. Fechner, A. Sowerby, S. Finch, and A. Stier, Biophys. J. 66: 1756-1762, 1994). Using a previously developed model for Ca2+ oscillations and waves (A. Goldbeter, G. Dupont, and M.J. Berridge, Proc. Natl. Acad. Sci. USA 87: 1461-1465, 1990; G. Dupont and A. Goldbeter, Biophys. J. 67: 2191-2204, 1994), we study by numerical simulations different conditions in which spiral Ca2+ waves can occur as a result of the spatial heterogeneity created by the nucleus in a system with geometry resembling that of a myocyte. A region of the cell lacking Ca2+ pools, acting as an obstacle able to break the propagation of planar waves, suffices to initiate a spiral wave; however, this region must be properly placed with respect to the pacemaker. An obstacle behaving as a barrier to diffusion is also able to create the initial bending that can lead to the spiral wave. We study how the occurrence of spiral Ca2+ waves in single cardiomyocytes is influenced by factors such as the stimulus location and the position, shape, and dimensions of the obstacle to planar wave propagation.

Calcium↗

PubMed1996

[Control of cell proliferation: towards new strategies suggested by modelling the mitotic oscillator].

The eukaryotic cell division cycle is governed by a biochemical oscillator controlling the periodic onset of mitosis. This oscillator involves a phosphorylation-dephosphorylation cascade that requires the synthesis of cyclin and results in the periodic activation of the cdc2 protein kinase. A minimal cascade model involving cyclin and cdc2 kinase accounts for the occurrence of sustained oscillations. The oscillations occur in a precise domain of parameter values; outside this domain, the cascade evolves towards a stable steady state corresponding to cellular quiescence. The model suggests different ways to stop the mitotic oscillator and, thereby, to control cell proliferation. Arrest of the mitotic oscillator may occur upon inhibiting or activating the enzymes of the cascade beyond critical values that define the boundary between the absence or presence of sustained oscillations.

Animals↗

PubMed1995

A model for circadian oscillations in the Drosophila period protein (PER).

The mechanism of circadian oscillations in the period protein (PER) in Drosophila is investigated by means of a theoretical model. Taking into account recent experimental observations, the model for the circadian clock is based on multiple phosphorylation of PER and on the negative feedback exerted by PER on the transcription of the period (per) gene. This minimal biochemical model provides a molecular basis for circadian oscillations of the limit cycle type. During oscillations, the peak in per mRNA precedes by several hours the peak in total PER protein. The results support the view that multiple PER phosphorylation introduces times delays which strengthen the capability of negative feedback to produce oscillations. The analysis shows that the rhythm only occurs in a range bounded by two critical values of the maximum rate of PER degradation. A similar result is obtained with respect to the rate of PER transport into the nucleus. The results suggest a tentative explanation for the altered period of per mutants, in terms of variations in the rate of PER degradation.

Animals↗

PubMed1994

Properties of intracellular Ca2+ waves generated by a model based on Ca(2+)-induced Ca2+ release.

Cytosolic Ca2+ waves occur in a number of cell types either spontaneously or after stimulation by hormones, neurotransmitters, or treatments promoting Ca2+ influx into the cells. These waves can be broadly classified into two types. Waves of type 1, observed in cardiac myocytes or Xenopus oocytes, correspond to the propagation of sharp bands of Ca2+ throughout the cell at a rate that is high enough to permit the simultaneous propagation of several fronts in a given cells. Waves of type 2, observed in hepatocytes, endothelial cells, or various kinds of eggs, correspond to the progressive elevation of cytosolic Ca2+ throughout the cell, followed by its quasi-homogeneous return down to basal levels. Here we analyze the propagation of these different types of intracellular Ca2+ waves in a model based on Ca(2+)-induced Ca2+ release (CICR). The model accounts for transient or sustained waves of type 1 or 2, depending on the size of the cell and on the values of the kinetic parameters that measure Ca2+ exchange between the cytosol, the extracellular medium, and intracellular stores. Two versions of the model based on CICR are considered. The first version involves two distinct Ca2+ pools sensitive to inositol 1,4,5-trisphosphate (IP3) and Ca2+, respectively, whereas the second version involves a single pool sensitive both to Ca2+ and IP3 behaving as co-agonists for Ca2+ release. Intracellular Ca2+ waves occur in the two versions of the model based on CICR, but fail to propagate in the one-pool model at subthreshold levels of IP3. For waves of type 1, we investigate the effect of the spatial distribution of Ca(2+)-sensitive Ca2+ stores within the cytosol, and show that the wave fails to propagate when the distance between the stores exceeds a critical value on the order of a few microns. We also determine how the period and velocity of the waves are affected by changes in parameters measuring stimulation, Ca2+ influx into the cell, or Ca2+ pumping into the stores. For waves of type 2, the numerical analysis indicates that the best qualitative agreement with experimental observations is obtained for phase waves. Finally, conditions are obtained for the occurrence of "echo" waves that are sometimes observed in the experiments.

Animals↗

PubMed1993

One-pool model for Ca2+ oscillations involving Ca2+ and inositol 1,4,5-trisphosphate as co-agonists for Ca2+ release.

Experimental observations indicate that Ca(2+)-induced Ca2+ release (CICR) may underlie Ca2+ oscillations in a variety of cells. In its original version, a theoretical model for signal-induced Ca2+ oscillations based on CICR assumed the existence of two types of pools, one sensitive to inositol 1,4,5-trisphosphate (IP3) and the other one sensitive to Ca2+. Recent experiments indicate that Ca2+ channels may sometimes be sensitive to both IP3 and Ca2+. Such a regulation may be viewed as Ca(2+)-sensitized IP3-induced Ca2+ release or, alternatively, as a form of IP3-sensitized CICR. We show that sustained oscillations can still occur in a one-pool model, provided that the same Ca2+ channels are sensitive to both Ca2+ and IP3 behaving as co-agonists. This model and the two-pool model based on CICR both account for a number of experimental observations but differ in some respects. Thus, while in the two-pool model the latency and period of Ca2+ oscillations are of the same order of magnitude and correlate in a roughly linear manner, latency in the one-pool model is always brief and remains much shorter than the period of oscillations. Moreover, the first Ca2+ spike is much larger than the following ones in the one-pool model. These distinctive properties might provide an explanation for the differences in Ca2+ oscillations observed in various cell types.

Calcium↗

PubMed1992

Suppression of chaos by periodic oscillations in a model for cyclic AMP signalling in Dictyostelium cells.

We investigate how the introduction of cells oscillating periodically affects the behaviour of a suspension of Dictyostelium discoideum amoebae undergoing chaotic oscillations of cyclic AMP. The analysis of a model indicates that a tiny proportion of periodic cells suffices to transform chaos into periodic oscillations in such suspensions. A similar result is obtained by forcing the aperiodic oscillations by a small-amplitude, periodic input of cyclic AMP. The results provide an explanation for the observation of regular oscillations in suspensions of a putatively chaotic mutant of Dictyostelium discoideum. More generally, the results show how chaos in biological systems may disappear through the coupling with periodic oscillations.

Animals↗

PubMed1992

Oscillations and waves of cytosolic calcium: insights from theoretical models.

Oscillations in cytosolic Ca2+ occur in a wide variety of cells, either spontaneously or as a result of external stimulation. This process is often accompanied by intracellular Ca2+ waves. A number of theoretical models have been proposed to account for the periodic generation and spatial propagation of Ca2+ signals. These models are reviewed and their predictions compared with experimental observations. Models for Ca2+ oscillations can be distinguished according to whether or not they rely on the concomitant, periodic variation in inositol 1,4,5-trisphosphate. Such a variation, however, is not required in models based on Ca(2+)-induced Ca2+ release. When Ca2+ diffusion is incorporated into these models, propagating waves of cytosolic Ca2+ arise, with profiles and rates comparable to those seen in the experiments.

Animals↗

PubMed1992

Protein phosphorylation driven by intracellular calcium oscillations: a kinetic analysis.

Given the ubiquitous nature of signal-induced Ca2+ oscillations, the question arises as to how cellular responses are affected by repetitive Ca2+ spikes. Among these responses, we focus on those involving protein phosphorylation. We examine, by numerical simulations of a theoretical model, the situation where a protein is phosphorylated by a Ca(2+)-activated kinase and dephosphorylated by a phosphatase. This reversible phosphorylation system is coupled to a mechanism generating cytosolic Ca2+ oscillations; for definiteness, this oscillatory mechanism is based on the process of Ca(2+)-induced Ca2+ release. The analysis shows that the average fraction of phosphorylated protein increases with the frequency of repetitive Ca2+ spikes; the latter frequency generally rises with the extent of external stimulation. Protein phosphorylation therefore provides a mechanism for the encoding of the external stimulation in terms of the frequency of signal-induced Ca2+ oscillations. Such a frequency encoding requires precise kinetic conditions on the Michaelis-Menten constants of the kinase and phosphatase, their maximal rates, and the degree of cooperativity in kinase activation by Ca2+. In particular, the most efficient encoding of Ca2+ oscillations based on protein phosphorylation occurs in conditions of zero-order ultrasensitivity, when the kinase and phosphatase are saturated by their protein substrate. The kinetic analysis uncovers a wide variety of temporal patterns of phosphorylation that could be driven by signal-induced Ca2+ oscillations.

Calcium↗

PubMed1992

Pulsatile signaling in intercellular communication. Periodic stimuli are more efficient than random or chaotic signals in a model based on receptor desensitization.

The efficiency of various patterns of pulsatile stimulation is determined in a model in which a receptor becomes desensitized in the presence of its stimulatory ligand. The effect of stochastic or chaotic changes in the duration and/or interval between successive pulses in a series of square-wave stimuli is investigated. Before addressing the effect of random variations in the pulsatile signal, we first extend the results of a previous analysis (Li, Y.X., and A. Goldbeter. 1989. Biophys. J. 55:125-145) by demonstrating the existence of an optimal periodic signal that maximizes target cell responsiveness whatever the magnitude of stimulation. As to the effect of stochastic or chaotic variations in the pulsatile stimulus, three kinds of random distributions are used, namely, a Gaussian and a white-noise distribution, and a chaotic time series generated by the logistic map. All these random distributions are symmetrically centered around the reference value of the duration or interval that characterizes the optimal periodic stimulus yielding maximal responsiveness in target cells. Stochastically or chaotically varying pulses are less effective than the periodic signal that corresponds to the optimal pattern of pulsatile stimulation. The response of the receptor system is most sensitive to changes in the time interval that separates successive stimuli. Similar conclusions hold when stochastic or chaotic signals are compared to a reference periodic stimulus differing from the optimal one, although the effect of random variations is then reduced. The decreased efficiency of stochastic pulses accounts for the observed superiority of periodic versus stochastic pulses of cyclic AMP (cAMP) in Dictyostelium amoebae. The results are also discussed with respect to the efficiency of periodic versus stochastic or chaotic patterns of hormone secretion.

Analysis of Variance↗

PubMed1991

A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase.

A minimal model for the mitotic oscillator is presented. The model, built on recent experimental advances, is based on the cascade of post-translational modification that modulates the activity of cdc2 kinase during the cell cycle. The model pertains to the situation encountered in early amphibian embryos, where the accumulation of cyclin suffices to trigger the onset of mitosis. In the first cycle of the bicyclic cascade model, cyclin promotes the activation of cdc2 kinase through reversible dephosphorylation, and in the second cycle, cdc2 kinase activates a cyclin protease by reversible phosphorylation. That cyclin activates cdc2 kinase while the kinase triggers the degradation of cyclin has suggested that oscillations may originate from such a negative feedback loop [Félix, M. A., Labbé, J. C., Dorée, M., Hunt, T. & Karsenti, E. (1990) Nature (London) 346, 379-382]. This conjecture is corroborated by the model, which indicates that sustained oscillations of the limit cycle type can arise in the cascade, provided that a threshold exists in the activation of cdc2 kinase by cyclin and in the activation of cyclin proteolysis by cdc2 kinase. The analysis shows how miototic oscillations may readily arise from time lags associated with these thresholds and from the delayed negative feedback provided by cdc2-induced cyclin degradation. A mechanism for the origin of the thresholds is proposed in terms of the phenomenon of zero-order ultrasensitivity previously described for biochemical systems regulated by covalent modification.

CDC2 Protein Kinase↗

PubMed1991

[Frequency coding in intercellular communication based on a generalized chronopharmacology].

An important function of biological rhythms is to support the frequency encoding of intercellular communications. Two examples of this phenomenon are discussed, namely, communication by cyclic AMP pulses in the slime mold Dictyostelium, and the pulsatile secretion of gonadotropic hormones. The existence of an optimal frequency of stimulation in these two systems possesses clinical implications, as attested by the use of pulsatile hormonal therapies in endocrinology. More generally, the pulsatile administration of some drugs, at the appropriate frequency, could maximize their physiological effect. Such a generalized chronopharmacology would take into account the kinetic characteristics of desensitization and resensitization in target cells, and would not be limited to the sole consideration of circadian rhythms within the organism.

Animals↗

PubMed1990

Frequency encoding of pulsatile signals of cAMP based on receptor desensitization in Dictyostelium cells.

Dictyostelium discoideum amoebae represent a prototype for the study of periodic signaling in intercellular communication. These cells synthesize cAMP in response to cAMP pulses. Cell responsiveness in Dictyostelium can be characterized by the capability to generate a large number of significant responses to cAMP signals in a given amount of time. The existence of a frequency of pulsatile cAMP signals yielding maximum responsiveness is demonstrated by analysis of a realistic model for cAMP synthesis, based on receptor desensitization. The optimal frequency of stimulation closely depends on the kinetics of receptor desensitization and resensitization in target cells. Synthesis of cAMP is determined both in conditions where cells are not excitable and in conditions where they relay suprathreshold pulses of cAMP. Moreover, the effect of the stimulus waveform is investigated, and several measures of cell responsiveness are compared. The results provide an explanation for the effectiveness of cAMP pulses delivered at 5 min intervals, and for the failure of pulses delivered at 2 min intervals, in inducing slime mold development. Besides applying to intercellular communication in Dictyostelium, the present analysis bears on patterns of pulsatile signaling observed for hormones and growth factors. In all these cases, it appears that pulsatile signals can be encoded in terms of their frequency on the basis of desensitization in target cells.

Cell Communication↗