Biomedical subjects

A Johner

Publications and source records attributed to A Johner.

12 recordsLinked to original sources

PubMed2004

Long range bond-bond correlations in dense polymer solutions.

The scaling of the bond-bond correlation function P1(s) along linear polymer chains is investigated with respect to the curvilinear distance s along the flexible chain and the monomer density rho via Monte Carlo and molecular dynamics simulations. Surprisingly, the correlations in dense three-dimensional solutions are found to decay with a power law P1(s) approximately s(-omega) with omega=3/2 and the exponential behavior commonly assumed is clearly ruled out for long chains. In semidilute solutions, the density dependent scaling of P1(s) approximately g(-omega(0))(s/g)(-omega) with omega(0)=2-2nu=0.824 (nu=0.588 being Flory's exponent) is set by the number of monomers g(rho) in an excluded volume blob. Our computational findings compare well with simple scaling arguments and perturbation calculation. The power-law behavior is due to self-interactions of chains caused by the chain connectivity and the incompressibility of the melt.

Journal Article↗

PubMed2004

Theoretical notes on dense polymers in two dimensions.

Two models of dense two-dimensional (2d) polymers are considered: (1) when chain intersections in 2d are totally forbidden, and (2) when they are allowed to some extent. It is shown that both polymer chain statistics and dynamics are entirely different for the two models. In the first case studied by Duplantier in 1986 polymer chains are essentially segregated and are characterized by non-classical gamma exponents. The contact line between segregated chains is fractal which leads to an unusual demixing behavior in 2d blends. In the second case (crossings are allowed) polymer coils are overlapping and show mean-field statistics with logarithmic corrections. The correlation function of concentration fluctuations in this system is predicted to exhibit a universal long range power tail (1/r4) which is due to non-mean-field effects. The dynamical behavior of the two models is even more drastically different: The first model is characterized by a relatively fast dynamics with conformational relaxation time tN is proportional to N(15/8) (i.e. tN is slightly shorter than the Rouse time is proportional to N2). On the other hand an exponentially slow dynamics is predicted for model 2 (with 3d entanglements).

Journal Article↗

PubMed2004

cAMP signalling in the kinetoplastid protozoa.

Several species of kinetoplastid protozoa cause major human infectious diseases. Trypanosoma cruzi is responsible for the fatal Chagas disease in large parts of South America, the various species of Leishmania cause a number of different human diseases with millions of patients world-wide, and the African trypanosome Trypanosoma brucei is the agent of human sleeping sickness, a disastrously re-emerging epidemic of fatal infections in Sub-Saharan Africa. Chemotherapy of all of these infections is in a very unsatisfactory state. cAMP signalling pathways in humans have provided interesting drug targets for a number of clinical conditions, from asthma to impotency. Similarly, cAMP signalling in kinetoplastids might offer useful targets for the development of novel antiparasitic drugs, which makes their exploration an urgent need. Current knowledge suggests that cAMP signalling proceeds along very similar pathways in all kinetoplastid pathogens (T. cruzi, the Leishmanias and T. brucei). Their adenylyl cyclases are structurally very different from the human enzymes and appear to function as enzyme-linked cell surface receptors. They might represent the major sensory apparatus of the kinetoplastids, guiding much of their environmental sensing and host/parasite interaction. The cAMP-specific phosphodiesterases of the kinetoplastids are rather similar to those of human cells and might function in similar ways. Essentially nothing is known on downstream effectors of cAMP in the kinetoplastids. Homologues of protein kinase A and its regulatory subunits have been identified, but their biochemical properties seem to be disctinct from that of mammalian protein kinase A.

Adenylyl Cyclases↗

PubMed2003

Arrested swelling of highly entangled polymer globules.

Upon aging, a collapsed long chain evolves from a crumpled state to a self-entangled globule which can be thought of as a large knot. Swelling of an equilibrium globule in good solvent is a two-step process: (i) fast swelling into an arrested stretched structure with conserved entanglement topology followed by (ii) slow disentanglement. Using computer simulation, we found both mass-mass (m-m) and entanglement-entanglement (e-e) power law correlations inside the swollen globule. The m-m correlations are characterized by a set of two exponents in agreement with a Flory-type argument. The e-e correlations are also characterized by two exponents, both of them larger (by approximately 0.3) than the related m-m exponents. We interpret this difference as evidence of distance-dependent repulsion E=-0.3ln((rho)k(B)T between entanglements sliding along the polymer chain.

Models, Chemical↗

PubMed2003

Charge relaxation in polyampholytes of various statistics.

We discuss theoretically the relaxation of charge fluctuations in polyampholyte solutions. It has been shown previously by some of us (J. Wittmer et al. Europhys. Lett. 24, 263 (1993)) that the charge distribution along the polyampholyte backbone has a dramatic influence on the polarization energy and hence on the solubility. Here it is demonstrated that a similar effect exists for the charge relaxation. The charge relaxation mechanism qualitatively depends on the statistics: for alternating polyampholytes the relaxation is mainly due to local dipole inversion and is not primarily driven by electrostatic interactions, whereas for random polyampholytes it is driven by electrostatic interactions. Intermediate statistics (with short-ranged (exponential) correlations) appear as a combination of these two limiting cases: short-wavelength modes are insensitive to the loss of correlations along the backbone, whereas long-wavelength modes correspond to a random statistics with renormalized charges. The relaxation of the dielectric constant is also calculated.

Journal Article↗

PubMed1999

Presence of polydnavirus transcripts in an egg-larval parasitoid and its lepidopterous host.

The parasitoid Chelonus inanitus (Braconidae, Hymenoptera) oviposits into eggs of Spodoptera littoralis (Noctuidae, Lepidoptera) and, along with the egg, also injects polydnaviruses and venom, which are prerequisites for successful parasitoid development. The parasitoid larva develops within the embryonic and larval stages of the host, which enters metamorphosis precociously and arrests development in the prepupal stage. Polydnaviruses are responsible for the developmental arrest and interfere with the host's endocrine system in the last larval instar. Polydnaviruses have a segmented genome and are transmitted as a provirus integrated in the wasp's genome. Virions are only formed in female wasps and no virus replication is seen in the parasitized host. Here it is shown that very small amounts of viral transcripts were found in parasitized eggs and early larval instars of S. littoralis. Later on, transcript quantities increased and were highest in the late last larval instar for two of the three viral segments tested and in the penultimate to early last larval instar for the third segment. These are the first data on the occurrence of viral transcripts in the host of an egg-larval parasitoid and they are different from data reported for hosts of larval parasitoids, where transcript levels are already high shortly after parasitization. The analysis of three open reading frames by RT-PCR revealed viral transcripts in parasitized S. littoralis and in female pupae of C. inanitus, indicating the absence of host specificity. For one open reading frame, transcripts were also seen in male pupae, suggesting transcription from integrated viral DNA.

Animals↗

PubMed1992