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A Mahadevan

Publications and source records attributed to A Mahadevan.

At least 55 records · Page 3Linked to original sources

Spectroscopic diagnosis of cervical intraepithelial neoplasia (CIN) in vivo using laser-induced fluorescence spectra at multiple excitation wavelengths.

BACKGROUND AND OBJECTIVE: The diagnostic contribution of cervical tissue fluorescence spectra acquired in vivo at 380 and 460 nm excitation were analyzed using a general multivariate statistical algorithm. MATERIALS AND METHODS: The primary steps of the algorithm are to: (1) preprocess data to reduce interpatient and intrapatient variation of tissue spectra from the same diagnostic category, without a priori information, (2) dimensionally reduce the pre-processed spectral data using Principal Component Analysis, and (3) develop a probability based classification scheme based on logistic discrimination using the diagnostically useful principal components. The algorithm was tested on cervical tissue spectra acquired from 165 sites at 380 nm excitation and from 147 sites at 460 nm excitation. A retrospective and prospective estimate of the algorithm's performance was determined. RESULTS: At 460 nm excitation, (1) SILs can be differentiated from normal squamous tissues with an average sensitivity and specificity of 91% +/- 1.3 and 75.5% +/- 1, respectively; furthermore, (2) high grade SILs can be differentiated from low grade SILs with an average sensitivity and specificity of 80% +/- 4 and 76% +/- 5, respectively. In addition, using tissue spectra at 380 nm excitation, SILs can be differentiated from normal columnar epithelia and inflammation with an average sensitivity and specificity of 77% +/- 1 and 72% +/- 9, respectively. CONCLUSIONS: Fluorescence spectra at multiple excitation wavelengths are essential for the detection and differential diagnosis of SILs at colposcopy.

Algorithms↗

Cloning of extracellular lipase gene from Xanthomonas campestris pathovar sesami on to Escherichia coli.

A lipase gene from X. campestris pv. sesami (strain XcS 1) causal agent of leaf spot disease of Sesamum indicum, was cloned onto E. colt. XcS showed the presence of lip+ transformants on Dye's medium with 1% glycerol as sole carbon source. The recombinant plasmids were isolated and when digested with Eco R1, yielded 2 fragments with molecular weights 4.0 and 4.8 kb. Thus a 8.8 kb insert DNA fragment was obtained which showed lipase activity.

Cloning, Molecular↗

Effects of methylisocyanate on soil microflora and the biochemical activity of soils.

Methylisocyanate at 500, 1000 and 2500 microg ml(-1) h(-1) markedly affected the fungal propagules in treated soils. Immediately after exposure to gas, both bacteria and actinomycetes were appreciably reduced, although by the seventh day, their populations had gradually increased. Increased soil respiration was evident at 500 microg ml(-1) of methylisocyanate, whereas, inhibition of respiration occurred at 1000 and 2500 microg ml(-1) h(-1). Methylisocyanate adversely affected soil nitrification; inhibition increased with increasing concentration. Up to 2500 microg ml(-1) h(-1), it stimulated ammonification, but the NH(4)-N level gradually declined with increased incubation.

Journal Article↗

In vivo diagnosis of cervical intraepithelial neoplasia using 337-nm-excited laser-induced fluorescence.

Laser-induced fluorescence at 337-nm excitation was used in vivo to differentiate neoplastic [cervical intraepithelial neoplasia (CIN)], nonneoplastic abnormal (inflammation and human papilloma viral infection), and normal cervical tissues. A colposcope (low-magnification microscope used to view the cervix with reflected light) was used to identify 66 normal and 49 abnormal (5 inflammation, 21 human papilloma virus infection, and 23 CIN) sites on the cervix in 28 patients. These sites were then interrogated spectroscopically. A two-stage algorithm was developed to diagnose CIN. The first stage differentiated histologically abnormal tissues from colposcopically normal tissues with a sensitivity, specificity, and positive predictive value of 92%, 90%, and 88%, respectively. The second stage differentiated preneoplastic and neoplastic tissues from nonneoplastic abnormal tissues with a sensitivity, specificity, and positive predictive value of 87%, 73%, and 74%, respectively. Spectroscopic differences were consistent with a decrease in the absolute contribution of collagen fluorescence, an increase in the absolute contribution of oxyhemoglobin attenuation, and an increase in the relative contribution of reduced nicotinamide dinucleotide phosphate [NAD(P)H] fluorescence as tissue progresses from normal to abnormal in the same patient. These results suggest that in vivo fluorescence spectroscopy of the cervix can be used to diagnose CIN at colposcopy.

Cervix Uteri↗

Fluorescence spectroscopy: a diagnostic tool for cervical intraepithelial neoplasia (CIN).

A spectroscopic system incorporating a pulsed nitrogen laser, an optical fiber probe, and an optical multichannel analyzer was utilized to record fluorescence spectra of the intact cervix at colposcopy. Spectra were obtained from 66 colposcopically normal areas and 49 histologically abnormal areas (5 pathologic inflammation, 21 HPV infection, 9 CIN I, 10 CIN II, and 4 CIN III) in 28 patients. The resulting spectra could be used to differentiate histologically abnormal tissues from colposcopically normal tissues with a sensitivity, specificity, and positive predictive value of 92, 90, and 88%. Furthermore, CIN could be differentiated from nonneoplastic abnormal tissues with a sensitivity, specificity, and positive predictive value of 87, 73, and 74%. These results suggest that laser-induced fluorescence can be used in the recognition and differential diagnosis of CIN at colposcopy.

Algorithms↗

Replicon typing of plasmids of phytopathogenic xanthomonads.

Replicon types of plasmids of phytopathogenic Xanthomonads have been identified. Plasmids of Xanthomonas oryzae pathovar oryzae belonged to types RepP, RepW, RepY, RepU, and RepF1 and 50% of the plasmids of different isolates of X.o.pv.oryzae belonged to type RepP. X.c.pv.citri contained plasmids belonging to RepF1 and RepF11. Of the 19 replicon probes used, only 9 (repP, repF1, repF11, repY, repQ, repW, repX, and repU) hybridized with various plasmids of Xanthomonas.

Bacterial Typing Techniques↗

Cloning and expression of the mercury resistance genes of marine Pseudomonas sp. strain MR1 plasmid pMR1 in Escherichia coli.

The mercury resistance determinant of marine Pseudomonas sp. strain MR1 plasmid pMR1 was cloned into a narrow-host-range vector pUC18. A direct selection of mercury resistant clones was successful and 12 clones were evolved; 9 from direct selection on mercury agar plates and 3 from ampicillin-resistant white colonies. All the predicted clones efficiently volatilized mercury. One of the hybrid plasmids pMRD5, containing a 15.5-kb insert, conferred inducible resistance to both HgCl2 and phenyl mercury acetate with over a 40-fold increase in mer resistance in Escherichia coli HB101. No DNA homology existed between the mer operon of Pseudomonas sp. strain MR1 and the characterized determinants of Tn501 mer DNA.

Autoradiography↗

In vivo fluorescence spectroscopy: potential for non-invasive, automated diagnosis of cervical intraepithelial neoplasia and use as a surrogate endpoint biomarker.

A quantitative measure of intraepithelial neoplasia which can be made in vivo without the need for tissue removal would be of clinical significance. Our group is working to develop such a technique based on fluorescence spectroscopy. This paper reviews the use of fluorescence spectroscopy for tissue diagnosis, describes our work to apply this technique to the diagnosis of cervical intraepithelial neoplasia (CIN), and discusses the potential utility of fluorescence spectroscopy as a surrogate endpoint biomarker (SEB). The development and performance of a spectroscopic diagnostic algorithm for CIN is described in detail. Fluorescence excitation-emission matrices (EEMs) were obtained in vitro for 18 cervical biopsies from 10 patients. At all excitation emission maxima, but especially at 330 nm excitation, 385 nm emission, the average normalized fluorescence intensity of histologically normal tissue is greater than that of histologically abnormal tissue. A diagnostic algorithm based on the relative intensity at 330 nm excitation, 385 nm emission can differentiate histologically normal and abnormal biopsies with a higher sensitivity, but a lower positive predictive value and specificity than colposcopy. However, paired comparison of histologically normal and abnormal biopsies from the same patient results in a sensitivity of 75%, positive predictive value of 86%, and specificity of 88% for spectroscopic identification of histological abnormality--similar to that of colposcopy. Based on these results, in vivo studies of cervical tissue fluorescence were conducted. A spectroscopic system incorporating a pulsed nitrogen laser, an optical fiber probe, and an optical multi-channel analyzer was used to record fluorescence spectra of the intact cervix at colposcopy.(ABSTRACT TRUNCATED AT 250 WORDS)

Automation↗

Study of the fluorescence properties of normal and neoplastic human cervical tissue.

Fluorescence excitation-emission matrices (EEMs) were obtained in vitro for 18 cervical biopsies from 10 patients. At all excitation emission maxima, but especially at 330 nm excitation, 385 nm emission, the average normalized fluorescence intensity of histologically normal tissue is greater statistically than that of histologically abnormal tissue. A diagnostic algorithm based on the relative intensity at 330 nm excitation, 385 nm emission can differentiate histologically normal and abnormal biopsies with a higher sensitivity (89%), but a lower positive predictive value (67%) and specificity (44%) than colposcopy (78%, 88%, 89%, respectively). However, paired comparison of histologically normal and abnormal biopsies from the same patient results in a sensitivity of 75%, positive predictive value of 86% and specificity of 88% for spectroscopic identification of histologic abnormality similar to that of colposcopy. This pilot study indicates that fluorescence spectroscopy may be useful in differentiating normal and abnormal tissue; based on these results, a strategy for in vivo studies is discussed.

Algorithms↗

Patterns of heavy metal resistance in marine Pseudomonas MR1.

Pseudomonas strain MR1 isolated from the coastal waters of Bay of Bengal was found to resist Hg, As, Cd, Cu, Zn and Pb. It efficiently detoxified both organic and inorganic mercuric compounds to non toxic metallic mercury by an inducible enzyme, mercuric reductase. Its resistance to arsenic might be due to energy-dependent arsenate efflux system. Cadmium was detected intracellularly and in the surrounding medium. The bacterium accumulated copper and lead intracellularly.

Dose-Response Relationship, Drug↗

Plasmid mediated metal and antibiotic resistance in marine Pseudomonas.

Pseudomonas sp isolated from the Bay of Bengal (Madras coast) contained a single large plasmid (pMR1) of 146 kb. Plasmid curing was not successful with mitomycin C, sodium dodecyl sulfate, acridine orange, nalidixic acid or heat. Transfer of mercury resistance from marine Pseudomonas to Escherichia coli occurred during mixed culture incubation in liquid broth at 10(-4) to 10(-5) ml(-1). However, transconjugants lacked the plasmid pMR1 and lost their ability to resist mercury. Transformation of pMR1 into E. coli competent cells was successful; however, the efficiency of transformation (1.49 x 10(2)Hgr transformants microsgm-1 pMR1 DNA) was low. E. coli transformants containing the plasmid pMR1 conferred inducible resistance to mercury, arsenic and cadmium compounds similar to the parental strain, but with increased expression. The mercury resistant transformants exhibited mercury volatilization activity. A correlation existed between metal and antibiotic resistance in the plasmid pMR1.

DNA, Bacterial↗

Degradation of indulin by Candida albicans.

Candida albicans utilized 14C (ring) labelled dehydropolymer of coniferyl alcohol, 14C-teakwood lignin and indulin and released p-hydroxybenzoic acid, vanillic acid, 3,4-dihydroxybenzoic acid and catechol as by products from lignin. Candida albicans produced catechol 1,2-dioxygenase, protocatechuate 3,4-dioxygenase, intra- and extracellular polyphenol oxidase and peroxidase during indulin degradation. The study suggests that Candida albicans degrades different types of lignin.

Candida albicans↗

Catechol degradation by immobilized Rhizobium sp.

Entrapped cells of Rhizobium sp. isolated from Lablab purpureus in calcium alginate degraded catechol (1,2-dihydroxybenzene) compared with the free cells. Agitation enhanced its rapid degradation. The versatility of Rhizobium sp. to degrade phenolic substances can be exploited in biotechnological application.

Alginates↗

Utilization of aromatic substances by Azotobacter chroococcum.

Azotobacter chroococcum utilized catechol, protocatechuic acid and gentisic acid as sole carbon source. Rothera's test indicated the ortho cleavage of phenols. The cells displayed high levels of dioxygenase activity. Catechol was cleaved by the ortho pathway mediated by catechol 1,2-dioxygenase. Protocatechuate and gentisic acid were also cleaved by the ortho pathway and cells grown in protocatechuate and gentisic acid displayed protocatechuate, 3,4-dioxygenase and gentisate dioxygenase activity, respectively.

Azotobacter↗

Dissimilation of 2,4-dichlorophenoxyacetic acid by Azotobacter chroococcum.

1. A strain of Azotobacter chroococcum which could use 2,4-dichlorophenoxyacetic acid (2,4-D) as sole carbon source was isolated. 2. The strain metabolized 2,4-D via p-chlorophenoxyacetic acid, p-chlorophenol and 4-chlorocatechol; the last metabolite was cleaved by catechol 1,2-dioxygenase. 3. The enzyme exhibited broad substrate specificity.

2,4-Dichlorophenoxyacetic Acid↗

Evidence for a dissimilatory plasmid in Azotobacter chroococcum.

Dissimilation of 2,4-dichlorophenoxyacetic acid in Azotobacter chroococcum is plasmid mediated. This dissimilatory plasmid designated pMSB1, was effectively cured by mitomycin C. The plasmid was transferred to another strain of Az. chroococcum at a frequency of 2.4 x 10(-3) transconjugants/donor cell. The cured cells did not utilize 2,4-D and its intermediates and lacked the plasmid DNA.

2,4-Dichlorophenoxyacetic Acid↗

Degradation of gallic acid by Aspergillus flavus.

Aspergillus flavus utilized gallic acid as sole carbon source and increased in presence of glucose and sucrose. The enzymes were inducible in nature and during degradation of gallic acid. 4-carboxy, 2-hydroxy cis, cis-muconic acid and pyruvic acid were detected. The estradiol (meta) fission of gallic acid by A. flavus was postulated.

Aspergillus flavus↗