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Biomedical subjects

A Rastelli

Publications and source records attributed to A Rastelli.

At least 19 recordsLinked to original sources

Interplay between thermodynamics and kinetics in the capping of InAs/GaAs(001) quantum dots.

A microscopic picture for the GaAs overgrowth of self-organized quantum dots is developed. Scanning tunneling microscopy measurements reveal two capping regimes: the first being characterized by a dot shrinking and a backward pyramid-to-dome shape transition. This regime is governed by fast dynamics resulting in island morphologies close to thermodynamic equilibrium. The second regime is marked by a true overgrowth and is controlled by kinetically limited surface diffusion processes. A simple model is developed to describe the observed structural changes which are rationalized in terms of energetic minimization driven by lattice mismatch and alloying.

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Dendrochronology of strain-relaxed islands.

We report on the observation and study of tree-ring structures below dislocated SiGe islands (superdomes) grown on Si(001) substrates. Analogous to the study of tree rings (dendrochronology), these footprints enable us to gain unambiguous information on the growth and evolution of superdomes and their neighboring islands. The temperature dependence of the critical volume for dislocation introduction is measured and related to the composition of the islands. We show clearly that island coalescence is the dominant pathway towards dislocation nucleation at low temperatures, while at higher temperatures anomalous coarsening is effective and leads to the formation of a depletion region around superdomes.

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Quantum light emission of two lateral tunnel-coupled (In,Ga)As/GaAs quantum dots controlled by a tunable static electric field.

Lateral quantum coupling between two self-assembled (In,Ga)As quantum dots has been observed. Photon statistics measurements between the various excitonic and biexcitonic transitions of these lateral quantum dot molecules display strong antibunching confirming the presence of coupling. Furthermore, we observe an anomalous exciton Stark shift with respect to static electric field. A simple model indicates that the lateral coupling is due to electron tunneling between the dots when the ground states are in resonance. The electron probability can then be shifted to either dot and the system can be used to create a wavelength-tunable single-photon emitter by simply applying a voltage.

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Kinetic evolution and equilibrium morphology of strained islands.

Self-assembled SiGe islands grown on Si(001) leave behind characteristic "footprints" that reveal that small islands shrink, losing material to nearby larger islands. The critical size, dividing shrinking from growing islands, corresponds to the pyramid-to-dome shape transition, consistent with "anomalous coarsening" While shrinking, {105}-faceted pyramids transform into truncated pyramids and ultimately into unfaceted mounds. The similarity to behavior during island growth indicates that island shape and facet formation are thermodynamically determined.

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Lateral motion of SiGe islands driven by surface-mediated alloying.

SiGe islands move laterally on a Si(001) substrate during in situ postgrowth annealing. This surprising behavior is revealed by an analysis of the substrate surface morphology after island removal using wet chemical etching. We explain the island motion by asymmetric surface-mediated alloying. Material leaves one side of the island by surface diffusion, and mixes with additional Si from the surrounding surface as it redeposits on the other side. Thus the island moves laterally while becoming larger and more dilute.

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Atomic-scale pathway of the pyramid-to-dome transition during ge growth on Si(001).

By high resolution scanning tunneling microscopy, we investigate the morphological transition from pyramid to dome islands during the growth of Ge on Si(001). We show that pyramids grow from top to bottom and that, from a critical size on, incomplete facets are formed. We demonstrate that the bunching of the steps delimiting these facets evolves into the steeper dome facets. Based on first principles and Tersoff-potential calculations, we develop a microscopic model for the onset of the morphological transition, able to reproduce closely the experimentally observed behavior.

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Hierarchical self-assembly of GaAs/AlGaAs quantum dots.

A novel structure containing self-assembled, unstrained GaAs quantum dots is obtained by combining solid-source molecular beam epitaxy and atomic-layer precise in situ etching. Photo-luminescence (PL) spectroscopy reveals light emission with very narrow inhomogeneous broadening and clearly resolved excited states at high excitation intensity. The dot morphology is determined by scanning probe microscopy and, combined with single band and eight-band k.p theory calculations, is used to interpret PL and single-dot spectra with no adjustable structural parameter.

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Morphological and compositional evolution of the ge/si(001) surface during exposure to a si flux.

By using scanning tunneling microscopy we found that the surface reconstruction of Ge/Si(001) epilayers evolves from (M x N) to (2 x N), and eventually to (2 x 1), during exposure to a Si flux. This sequence appears to be just the inverse of that observed during the growth of Ge or SiGe alloys on Si(001). However, molecular dynamics simulations supported by ab initio calculations allow us to interpret this morphological evolution in terms of Si migration through the epilayer and complex Si-Ge intermixing below the top Ge layer.

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Barrierless formation and faceting of SiGe islands on Si(001).

The initial stages of the formation of SiGe islands on Si(001) pose a long-standing puzzle. We show that the behavior can be consistently explained by one simple assumption-that for strained SiGe, (001) is a stable orientation but not a facet orientation. Calculations of energy and morphology reproduce the key features of "prepyramid" and "pyramid" islands, and explain the initial formation and subsequent shape transition. Scanning tunneling microscopy measurements confirm the key assumptions and predictions of the model.

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Critical role of the surface reconstruction in the thermodynamic stability of (105) Ge pyramids on Si(001).

We show by molecular dynamics simulations on a scale comparable to experimental dimensions that a peculiar surface reconstruction of the (105) facets is responsible for the stability of Ge pyramids on Si(001). This finding is confirmed by ab initio total energy calculations for competing surface reconstructions and a very satisfactory comparison of the corresponding charge density maps to scanning tunneling microscopy measurements of the facets, both for filled and empty states.

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Reversible shape evolution of Ge islands on Si(001).

The evolution of strained Ge/Si(001) islands during exposure to a Si flux was investigated by scanning tunneling microscopy. Dome islands display appreciable shape changes at Si coverages as low as 0.5 monolayer. With increasing coverage, they transform into [105]-faceted pyramids, and eventually into stepped mounds with steps parallel to the <110> directions. These morphological changes are induced by alloying and represent a complete reversal of those previously observed during Ge island growth. The results are interpreted with a simple model in which the equilibrium shape of an island mainly depends on its volume and composition.

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Modeling the 1,3-dipolar cycloaddition of nitrones to vinylboranes in competition with boration, cyclization, and oxidation reactions.

Structures and energetics of reactants, reactant complexes, concerted transition structures, and products of the cycloaddition of the prototypical nitrone with vinylborane have been produced and discussed. Structure optimizations have been performed at the B3LYP/6-31G(d) and B3LYP/AUG-cc-pVDZ levels of approximation, and single-point calculations on the B3LYP geometries have been carried out at the MP4(SDTQ) level with the same basis sets. Kinetic contributions to standard enthalpies, entropies, and free enthalpies have been computed at the same levels of geometry optimizations. The effects of methyl and chloro substitution on the BH2 group and of methyl substitution on the vinyl moiety has been also explicitly considered. The most striking theoretical features of this cycloaddition are (i) the formation of reactant complexes where the nitrone oxygen is strictly bound up to the boron atom (B...O interactions), (ii) their persistence in the endo/exo transition structures, and (iii) energy profiles suggesting very high reaction rates, regiospecificity (5-borylisoxazolidines) and complete endo-stereoselectivity. The BH2 (BX2) substituent appears to induce a sort of intramolecular catalysis which is also largely selective in favor of the endo reaction path. Possible competitive reaction paths such as cyclization, organoboration, and oxidation have equally been investigated, on the same grounds, both with prototypical reagents and with dimethylvinylborane, dichlorovinylborane, 2-methyl-1-propenylborane, and 2-methyl-1-propenyldichloroborane. The transition structures for these reaction paths are significantly higher in energy than those of the corresponding 1,3-dipolar cycloadditions in the sequence oxidation >> cyclization > boration > cycloaddition, whereas the resulting reaction products show the reversed sequence. Polar solvents appear to increase the competition of boration although maintaining its character of secondary reaction. As expected, the reaction rate of 1,3-dipolar cycloaddition is lowered by dimethyl substitution on the vinyl CH2 reacting center (i.e., for the reaction of 2-methyl-1-propenylborane and 2-methyl-1-propenyldichloroborane) whereas the reaction rate of boration is increased, the boration results being significantly competitive even in the gas phase. Experiments for the control of the above predictions are not yet available.

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Facial selectivity in epoxidation of 2-cyclohexen-1-ol with peroxy acids. A computational DFT study

We addressed the mechanism of epoxidation of 2-cyclohexen-1-ol by locating all the transition structures (TSs) for the reaction of peroxyformic acid (PFA) with both pseudoequatorial and pseudoaxial cyclohexenol conformers (five TSs for each conformer) and, for purpose of comparison, also those for the PFA epoxidation of cyclohexene. Geometry optimizations were performed at the B3LYP/6-31G level, energies refined with single point B3LYP/6-311+G// B3LYP/6-31G calculations and solvent effects introduced with the CPCM method. Our results can be summarized as follows: (i) all TSs exhibit a spiro-like structure, that is, the dihedral angle between the peroxy acid plane and the forming oxirane plane is closer to 90 degrees than to 0 degrees (or 180 degrees ); (ii) there is a stabilizing hydrogen bonding interaction in syn TSs that, however, is partly counteracted by unfavorable entropic effects; (iii) syn,exo TSs with hydrogen bonding at the PFA peroxy oxygens are definitely more stable than syn,endo TSs hydrogen bonded at the PFA carbonyl oxygen; (iv) facial selectivity of epoxidation of both cyclohexenol conformers is mostly the result of competition between only two TSs, namely, an anti,exo TS and its syn,exo counterpart. The latter TS is more stable than the former one, as stabilization by hydrogen bonding overrides the unfavorable entropic and solvent effects; (v) calculations correctly predict both the experimental dominance of attack leading to syn epoxide for both cyclohexenol conformers and the higher syn selectivity observed for the pseudoequatorial as compared to the pseudoaxial derivative. Moreover, also the experimental relative and absolute epoxidation rates for cyclohexene and cyclohexenol as well as for pseudoaxial and pseudoequatorial cyclohexenol derivatives are fairly well reproduced by computational data.

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Concerted vs stepwise mechanism in 1,3-dipolar cycloaddition of nitrone to ethene, cyclobutadiene, and benzocyclobutadiene. A computational study

The problem of competition between concerted and stepwise diradical mechanisms in 1,3-dipolar cycloadditions was addressed by studying the reaction between nitrone and ethene with DFT (R(U)B3LYP/6-31G) and post HF methods. According to calculations this reaction should take place via the concerted cycloaddition path. The stepwise process is a viable but not competitive alternative. The R(U)B3LYP/6-31G study was extended to the reaction of the same 1, 3-dipole with cyclobutadiene and benzocyclobutadiene. The very reactive antiaromatic cyclobutadiene has an electronic structure that is particularly disposed to promote stepwise diradical pathways. Calculations suggest that its reaction with nitrone represents a borderline case in which the stepwise process can compete with the concerted one on similar footing. Attenuation of the antiaromatic character of the dipolarophile, i.e., on passing from cyclobutadiene to benzocyclobutadiene, causes the concerted 1,3-dipolar cycloaddition to become once again prevalent over the two-step path. Thus, our results suggest that, in 1,3-dipolar cycloadditions that involve normal dipolarophiles, the concerted path (Huisgen's mechanism) should clearly overwhelm its stepwise diradical (Firestone's mechanism) counterpart.

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Epoxidation of acyclic chiral allylic alcohols with peroxy acids: spiro or planar butterfly transition structures? A computational DFT answer

The mechanism of the epoxidation of two chiral allylic alcohols, i.e., 3-methyl-3-buten-2-ol and (Z)-3-penten-2-ol, with peroxyformic acid has been investigated by locating 20 transition structures with the B3LYP/6-31G* method and by evaluating their electronic energy also at the B3LYP/6-311+G**@B3LYP/6-31G* theory level. Relative stability of TSs, as far as electronic energy is concerned, is basis set dependent; moreover, it also depends on entropy and solvent effects. Free enthalpies, calculated by using electronic energy at the higher theory level and with inclusion of solvent effects, indicates that syn, exo TSs, where the olefinic OH group hydrogen bonds the peroxy oxygens of the peroxy acid, outweigh syn, endo TSs, where the peroxy acid carbonyl oxygen is involved in hydrogen bonding. In the former TSs the peroxy acid moiety maintains its planar geometry while in the latter ones a strong out-of-plane distortion of peroxy acid is observed. This distortion makes it viable an unprecedented 1,2-H shift, as a possible alternative to the 1,4-H shift, for the peroxy acid hydrogen. In fact, for one syn, endo TS IRC analysis demonstrated that the 1,2-H shift mechanism is actually operative. The geometry of all TSs substantially conforms to a spiro (i.e., with the peroxy acid plane almost perpendicular to the C=C bond axis) butterfly orientation of the reactants while no TS resembles, even loosely, the planar butterfly structure. Theoretical threo/erythro epoxide ratios are in fair accord with experimental data. Calculations indicate that threo epoxides derive mostly from TSs in which the olefinic OH assumes an outside conformation while erythro epoxides originate from TSs with the OH group in an inside position. Computational findings do not support the qualitative TS models recently proposed for these reactions.

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Biases of motion perception revealed by reversing gratings in humans who had infantile-onset strabismus.

Motion perception was tested by requiring adult subjects to view gratings that remained stationary but reversed in contrast several times per second. Subjects viewed monocularly and judged whether the gratings were stationary, or moving in one direction, in successive 3s trials. Subjects who had early-onset strabismus most frequently perceived vertically oriented gratings to be moving nasalward, and horizontally oriented gratings to be moving up or down. Normal subjects and subjects who had late-onset strabismus most frequently perceived the gratings to be stationary. The asymmetries of motion perception in early-onset strabismus imply that the visual motion neurons of cerebral cortex develop properly only if they receive normal binocular input during infancy.

Adolescent↗

[Arsenic-iron balneotherapy in anxiety syndromes. Controlled clinical study at the Levico thermal baths].

A comparative clinical study was conducted in order to assess the efficacy of arsenic-iron bath treatment in subjects suffering from endogenous reactive anxiety syndromes with somatisation. The study group of 76 subjects included 50 given the classic arsenic-iron bath treatment for two weeks and 26 untreated controls. Zung and Crown self-assessment Rating Scales amplified with items of socioepidemiological interest were completed by all subjects on entry, immediately after treatment and a mean 4 months later. Biometrical analysis of the data collected each time revealed a statistically significant (0.001 less than P less than 0.05) reduction in all parameters evaluated (anxiety, somatisation forms, consumption of drugs and number of medical consultations) among the treated Group. In contrast no significant difference was revealed among the untreated group. In order to verify the possible influence of climate the data on the control group, all local people, were then compared only with data on treated "locals". Here too there was a statistically significant reduction in anxiety and somatisation parameters only among treated subjects. It is therefore clear that the difference between the two groups is solely attributable to the arsenic-iron baths whose therapeutic efficacy is therefore confirmed.

Adult↗

Structure-activity relationships in dihydropteroate synthase inhibition by sulfanilamides. Comparison with the antibacterial activity.

A set of 12 acidic, 5 imidic, and 5 amidic sulfanilamides (SA) were tested for their inhibitory activity on dihydropteroate synthase of Escherichia coli. The enzyme inhibition indexes (EII50) were compared with the growth inhibition indexes (GII50), and electronic structures of SA and cell permeability effects were discussed as possible determinant factors of the observed variation of the activity in the SA set. The results strongly support the following conclusion: (a) permeability factors are highly effective in depressing the activity of SA in growth inhibition with respect to enzyme inhibition, but they do not appear to contribute significantly to the activity variation; (b) the activities of the different SA, both in growth and enzyme inhibition experiments, are well accounted for by the electronic features of these compounds.

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