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A Rogier T Donders

Publications and source records attributed to A Rogier T Donders.

6 recordsLinked to original sources

Review: a gentle introduction to imputation of missing values.

In most situations, simple techniques for handling missing data (such as complete case analysis, overall mean imputation, and the missing-indicator method) produce biased results, whereas imputation techniques yield valid results without complicating the analysis once the imputations are carried out. Imputation techniques are based on the idea that any subject in a study sample can be replaced by a new randomly chosen subject from the same source population. Imputation of missing data on a variable is replacing that missing by a value that is drawn from an estimate of the distribution of this variable. In single imputation, only one estimate is used. In multiple imputation, various estimates are used, reflecting the uncertainty in the estimation of this distribution. Under the general conditions of so-called missing at random and missing completely at random, both single and multiple imputations result in unbiased estimates of study associations. But single imputation results in too small estimated standard errors, whereas multiple imputation results in correctly estimated standard errors and confidence intervals. In this article we explain why all this is the case, and use a simple simulation study to demonstrate our explanations. We also explain and illustrate why two frequently used methods to handle missing data, i.e., overall mean imputation and the missing-indicator method, almost always result in biased estimates.

Bias↗

Imputation of missing values is superior to complete case analysis and the missing-indicator method in multivariable diagnostic research: a clinical example.

BACKGROUND AND OBJECTIVES: To illustrate the effects of different methods for handling missing data--complete case analysis, missing-indicator method, single imputation of unconditional and conditional mean, and multiple imputation (MI)--in the context of multivariable diagnostic research aiming to identify potential predictors (test results) that independently contribute to the prediction of disease presence or absence. METHODS: We used data from 398 subjects from a prospective study on the diagnosis of pulmonary embolism. Various diagnostic predictors or tests had (varying percentages of) missing values. Per method of handling these missing values, we fitted a diagnostic prediction model using multivariable logistic regression analysis. RESULTS: The receiver operating characteristic curve area for all diagnostic models was above 0.75. The predictors in the final models based on the complete case analysis, and after using the missing-indicator method, were very different compared to the other models. The models based on MI did not differ much from the models derived after using single conditional and unconditional mean imputation. CONCLUSION: In multivariable diagnostic research complete case analysis and the use of the missing-indicator method should be avoided, even when data are missing completely at random. MI methods are known to be superior to single imputation methods. For our example study, the single imputation methods performed equally well, but this was most likely because of the low overall number of missing values.

Adult↗

The voice handicap of student-teachers and risk factors perceived to have a negative influence on the voice.

A cross-sectional questionnaire survey was performed. The objectives of the study were to assess the psychosocial impact of current voice complaints as perceived by student-teachers with voice complaints in comparison with student-teachers without voice complaints, and to observe the pattern of risk factors in relation to their voice handicap. Subjects in the general population without a voice-demanding profession were selected as a reference group for limited comparison with the total group of student-teachers (future professional voice users). The respondents to the questionnaires were anonymous. Among the student-teachers, 17.2% reported current voice complaints in comparison with 9.7% of the reference group, and the odds ratio was 1.94, which showed the relative risk. Student-teachers had significantly greater total Voice Handicap Index (VHI) scores than the reference group (P = 0.034). The VHI subscale scores were not significantly different (P > 0.05). Student-teachers who reported current voice complaints had a significantly higher total VHI and subscale scores than student teachers without voice complaints (P < 0.001). Of the student-teachers without voice complaints, 17.0% had VHI scores greater than the 75th percentile. These persons may be neglecting their voice handicap and probably represent the false-negative cases in the estimation of voice complaints. Logistic regression analysis of each of the given risk factors with the VHI as the independent variable showed that the perceived negative influence of the given risk factors on their voices was significantly greater with increasing VHI scores across the VHI range. A significant correlation was observed between the number of perceived risk factors and increasing VHI scores across the VHI range. An increased awareness of risk factors in relation to their voice handicap would serve to motivate student-teachers to change factors that contributed to their voice problem. Attention to all risk factors, which the subjects perceive to be a risk, would aid in effective management of their voice handicap.

Adult↗

Penalized maximum likelihood estimation to directly adjust diagnostic and prognostic prediction models for overoptimism: a clinical example.

BACKGROUND AND OBJECTIVE: There is growing interest in developing prediction models. The accuracy of such models when applied in new patient samples is commonly lower than estimated from the development sample. This may be because of differences between the samples and/or because the developed model was overfitted (too optimistic). Various methods, including bootstrapping techniques exist for afterwards shrinking the regression coefficients and the model's discrimination and calibration for overoptimism. Penalized maximum likelihood estimation (PMLE) is a more rigorous method because adjustment for overfitting is directly built into the model development, instead of relying on shrinkage afterwards. PMLE has been described mainly in the statistical literature and is rarely applied to empirical data. Using empirical data, we illustrate the use of PMLE to develop a prediction model. METHODS: The accuracy of the final PMLE model will be contrasted with the final models derived by ordinary stepwise logistic regression without and with shrinkage afterwards. The potential advantages and disadvantages of PMLE over the other two strategies are discussed. RESULTS: PMLE leads to smaller prediction errors, provides for model reduction to a user-defined degree, and may differently shrink each predictor for overoptimism without sacrificing much discriminative accuracy of the model. CONCLUSION: PMLE is an easily applicable and promising method to directly adjust clinical prediction models for overoptimism.

Bias↗

The incidence of visually impaired children with retinopathy of prematurity and their concomitant disabilities.

PURPOSE: To determine, in relation to two previous studies, the incidence of visual impairment (VI) caused by retinopathy of prematurity (ROP) in children born in the Netherlands between 1994 and 2000 and their associated nonvisual disabilities. METHODS: From all institutes, schools, and ambulatory services for the partially sighted and blind, data on ROP infants born between 1994 and 2000 were retrieved. Apart from neonatal and ophthalmologic data, other data were gathered concerning the following concomitant disabilities: behavioral abnormalities, epilepsy, hearing deficit, developmental delay, and distinct neurological handicaps. Birth rate data were obtained from the Central Bureau of Statistics for the Netherlands. RESULTS: Data on 51 of 54 infants (94.4%) were studied. There was a statistically insignificant decrease in the incidence of visually impaired children caused by ROP in the period between 1994 and 2000 compared with the period between 1986 and 1994. Neonatal and ophthalmologic data of the infants were comparable for the study period and the previous period. The incidence of behavioral abnormalities in infants with ROP-related sequelae increased significantly in the study period compared with the previous one (46.9% v 21.8%, P <.05. The percentage of infants who received treatment for severe ROP did not change significantly (56.9% v 43.9% in the previous period). CONCLUSIONS: This study shows a statistically insignificant decrease in the number of infants with visual impairment caused by ROP in the Netherlands in the period between 1994 and 2000 as well as a significant increase in the incidence of behavioral abnormalities in these children. Still, 43.1% of the infants did not receive acute-phase ROP treatment.

Child Behavior Disorders↗

Multidrug resistance among Enterobacteriaceae is strongly associated with the presence of integrons and is independent of species or isolate origin.

This study investigated the extent to which multidrug resistance (MDR) among Enterobacteriaceae is related to DNA elements called "integrons," whether the relationship is species dependent or origin dependent, and which resistance patterns are associated with integrons. Analysis of 867 nonrepeat isolates comprising 8 species and originating from the community and 23 European hospitals showed a significant relation between MDR and integrons, independent of species or origin. Although resistance to each tested antimicrobial agent was significantly associated with integrons, only resistance to sulfamethoxazole, cotrimoxazole, gentamicin, tobramycin, ampicillin, piperacillin, and cefuroxime predicted the presence of integrons. Combined resistance to both ampicillin and sulfamethoxazole-trimethoprim was the starting point for the development of resistance to additional beta-lactams, aminoglycosides, cephalosporins, and ciprofloxacin, a development paralleled by an increasing prevalence of integrons. The acquisition of resistance genes is not random, and the transfer of integron-carrying elements plays a dominant role in the development of MDR by Enterobacteriaceae.

Anti-Bacterial Agents↗