Biomedical subjects

Alberto Striolo

Publications and source records attributed to Alberto Striolo.

9 recordsLinked to original sources

PubMed2007

Steric stabilization of spherical colloidal particles: Implicit and explicit solvent.

We present the results of Monte Carlo simulations and density functional theory treatment of interactions between spherical colloidal brushes both in implicit (good) solvent and in an explicit polymeric solution. Overall, theory is seen to be in good agreement with simulations. We find that interactions between hard-sphere particles grafted with hard-sphere chains are always repulsive in implicit solvent. The range and steepness of the repulsive interaction is sensitive to the grafting density and the length of the grafted chains. When the brushes are immersed in an explicit solvent of hard-sphere chains, a weak mid-range attraction arises, provided the length of the free chains exceeds that of the grafted chains.

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PubMed2006

Colloidal brushes in complex solutions: existence of a weak midrange attraction due to excluded-volume effects.

Towards the prediction of thermodynamic properties for complex systems and the design of self-assembly techniques for the production of nanocomposite materials, we employ Monte Carlo simulations to calculate the effective interactions between colloidal brushes dissolved in nonadsorbing polymer solutions. For simplicity, all interactions are reduced to excluded-volume potentials. Our results indicate that (1) due to excluded-volume effects and the absence of attractive van der Waals forces in our calculations, the effective interactions between colloidal brushes in a continuum medium are always repulsive; and (2) that the short-ranged repulsion between the colloidal brushes may be coupled to a midrange attraction when nonadsorbing polymers are in solution. We prove that a depletion mechanism is responsible for the midranged attraction and we observe that the strength of the induced attraction is weaker compared to the depletion attraction computed for hard-sphere colloids in nonadsorbing polymer solutions. More interestingly, however, our results indicate that, even for the simple interaction potentials employed here, it is not possible to superimpose depletion attraction and steric repulsion to predict the correct pair potential between colloidal brushes in nonadsorbing polymer solutions.

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PubMed2006

Organic-inorganic telechelic molecules: solution properties from simulations.

We report molecular dynamics simulations for telechelic molecules composed of two polyhedral oligomeric silsesquioxane (POSS) cages connected by one hydrocarbon backbone dissolved in liquid normal hexane. Silsesquioxanes are novel hybrid organic-inorganic molecules that are useful as building blocks for the synthesis of nanostructured materials. By including POSS molecules within a polymeric material it is possible to modify mechanical properties such as resistance to heat and glass transition temperatures. Unfortunately, the molecular mechanisms responsible for these enhancements are at present not completely understood. In an effort to elucidate the molecular phenomena responsible for these effects, we have studied the conformation of telechelic POSS molecules in solution, as well as their self-diffusion coefficients, as a function of the length of the hydrocarbon backbone. We focus on molecules in which the radius of gyration of the alkane backbone is comparable to the size of the silsesquioxane cages. Our results indicate that the backbone has a significant influence on both the equilibrium and the transport properties of dissolved telechelic hybrid molecules. These observations are useful for developing strategies to direct the self-assembly of nanostructured materials.

Algorithms↗

PubMed2006

Adsorption of model surfactantlike copolymers on nanopatterned surfaces.

The adsorption of polymers, copolymers, surfactants, and biopolymers is often used to engineer surfaces. Towards improving our understanding of polymer adsorption we report simulation results for the adsorption of model copolymers, resembling surfactants, on nanoscale patterned hydrophobic surfaces at infinitely dilute concentrations. The surfactants are composed by a hydrophobic tail and a hydrophilic head. Surfactant adsorption on the hydrophobic surface occurs in the tail-down configuration in which the tail segments are in contact with the surface. We investigate how the presence of a solid hard mask, used to create the nanoscale pattern on the underlying hydrophobic surface, affects the surfactant adsorption. We find that surfactant adsorption on the underlying hydrophobic surface is prevented when the characteristic dimensions of the solid hard mask are less than twice the radius of gyration. We also show that details about mask-surfactant head effective interactions have the potential to alter the characteristics of adsorption. When the mask repels the head segments, the surfactants hardly adsorb on the underlying hydrophobic surface. When the mask strongly attracts the surfactant heads, the surfactants may preferentially adsorb on the mask rather than on the underlying hydrophobic surface. Under these latter circumstances the adsorbed surfactants in some cases assume a head-down configuration in which the head segments are in contact with the mask and the tail segments extend towards the bulk solution. We explain our results in terms of enthalpy and entropy of adsorption and discuss practical implications.

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PubMed2006

Simulated water adsorption in chemically heterogeneous carbon nanotubes.

Grand canonical Monte Carlo simulations are used to study the adsorption of water in single-walled (10:10), (12:12), and (20:20) carbon nanotubes at 298 K. Water is represented by the extended simple point charge model and the carbon atoms as Lennard-Jones spheres. The nanotubes are decorated with different amounts of oxygenated sites, represented as carbonyl groups. In the absence of carbonyl groups the simulated isotherms are characterized by negligible amounts of water uptake at low pressures, sudden and complete pore filling once a threshold pressure is reached, and wide adsorption-desorption hysteresis loops. In the presence of a few carbonyl groups the simulated adsorption isotherms are characterized by pore filling at lower pressures and by narrower adsorption-desorption hysteresis loops compared to the results obtained in the absence of carbonyl groups. Our results show that the distribution of the carbonyl groups has a strong effect on the adsorption isotherms. For carbonyl groups localized in a narrow section the adsorption of water may be gradual because a cluster of adsorbed water forms at low pressures and grows as the pressure increases. For carbonyl groups distributed along the nanotube the adsorption isotherm is of type V.

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PubMed2006

Evaluation of force fields for molecular simulation of polyhedral oligomeric silsesquioxanes.

Polyhedral oligomeric silsesquioxanes (POSS) are nanometer-size molecules suitable for the production of organic-inorganic nanocomposite materials. These organic-inorganic nano-building blocks show promise for enabling the production of polymeric materials of exceptional mechanical properties as well as novel composite materials. While the experimental studies of these materials have rapidly evolved in the past decade, their theoretical investigation is still in its infancy. Toward the validation of force fields for the molecular simulation of POSS-containing systems, we present the charge-transfer reactive (CTR) force field for the molecular simulation of polyhedral oligomeric silsesquioxane (POSS) molecules and compare the ability of this, and several force fields taken from the literature, to predict the thermophysical properties of POSS-containing systems. The literature force fields compared include the universal force field (UFF) and the COMPASS and Hybrid-COMPASS force fields. Predictions from molecular dynamics simulations of the structural parameters (unit cell vectors), melting temperature, and FT-IR spectra of crystals of POSS monomers are presented. The POSS monomers investigated are octahydride, octamethyl, and octapropyl POSS. Predicted quantities are compared to experimental results where available and provide molecular-level physical insight into several aspects of the behavior of POSS molecules. While all the force fields tested perform reasonably well, our results indicate that the Hybrid-COMPASS and CTR force fields predict structural properties that are in good agreement with experimental data.

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PubMed2006

The mechanism of water diffusion in narrow carbon nanotubes.

Carbon nanotubes show exceptional physical properties that render them promising candidates as building blocks for nanostructured materials. Many ambitious applications, ranging from gene therapy to membrane separations, require the delivery of fluids, in particular aqueous solutions, through the interior of carbon nanotubes. To foster these and other applications, it is necessary to understand the thermodynamic and transport properties of water confined within long narrow carbon nanotubes. Previous theoretical work considered either short carbon nanotubes or short periods of time. By conducting molecular dynamics simulations in the microcanonical ensemble for water confined in infinitely long carbon nanotubes of diameter 1.08 nm, we show here that confined water molecules diffuse through a fast ballistic motion mechanism for up to 500 ps at room temperature. By comparing the results obtained for the diffusion of water to those obtained for the diffusion of a reference Lennard-Jones fluid, we prove here that long-lasting hydrogen bonds are responsible for the ballistic diffusion of water clusters in narrow carbon nanotubes, as opposed to spatial mismatches between pore-fluid and fluid-fluid attractive interactions which, as shown previously by others, are responsible for the concerted motion of simple fluids in molecular sieves. Additionally we prove here for the first time that, despite the narrow diameter of the carbon nanotubes considered which may suggest the existence of single-file diffusion, when the trajectories of confined water are studied at time scales in excess of 500 ps, a Fickian-type diffusion mechanism prevails. Our results are important for designing nano fluidic apparatuses to develop, for example, novel drug-delivery devices.

Capillary Action↗

PubMed2005

C60 binds to and deforms nucleotides.

Atomistic molecular dynamics simulations are performed for up to 20 ns to monitor the formation and the stability of complexes composed of single- or double-strand DNA molecules and C60 in aqueous solution. Despite the hydrophobic nature of C60, our results show that fullerenes strongly bind to nucleotides. The binding energies are in the range -27 to -42 kcal/mol; by contrast, the binding energy of two fullerenes in aqueous solution is only -7.5 kcal/mol. We observe the displacement of water molecules from the region between the nucleotides and the fullerenes and we attribute the large favorable interaction energies to hydrophobic interactions. The features of the DNA-C60 complexes depend on the nature of the nucleotides: C60 binds to double-strand DNA, either at the hydrophobic ends or at the minor groove of the nucleotide. C60 binds to single-strand DNA and deforms the nucleotides significantly. Unexpectedly, when the double-strand DNA is in the A-form, fullerenes penetrate into the double helix from the end, form stable hybrids, and frustrate the hydrogen bonds between end-group basepairs in the nucleotide. When the DNA molecule is damaged (specifically, a gap was created by removing a piece of the nucleotide from one helix), fullerenes can stably occupy the damaged site. We speculate that this strong association may negatively impact the self-repairing process of the double-strand DNA. Our results clearly indicate that the association between C60 and DNA is stronger and more favorable than that between two C60 molecules in water. Therefore, our simulation results suggest that C60 molecules have potentially negative impact on the structure, stability, and biological functions of DNA molecules.

Binding Sites↗

PubMed2005

Thermodynamic and transport properties of polyhedral oligomeric sislesquioxanes in poly(dimethylsiloxane).

Polyhedral oligomeric silsesquioxane (POSS) molecules when functionalized appropriately and dispersed in polymers show promise as monodisperse organic-inorganic hybrid nanocomposite materials characterized by superior mechanical properties. We report here molecular-simulation results for POSS-POSS radial distribution functions, potentials of mean force, and self-diffusion coefficients for POSS monomers dissolved in poly(dimethylsiloxane) in the temperature range of 300-1000 K. Our results demonstrate that it is possible to modulate the effective POSS-POSS interaction by increasing the temperature or by substituting the hydrogen atoms in the POSS monomer with methyl groups. In addition, our results indicate that the motion of POSS monomers dissolved in poly(dimethylsiloxane) follows a hopping mechanism.

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