PubMed Health⌕ Search

Biomedical subjects

Alexei A Kornyshev

Publications and source records attributed to Alexei A Kornyshev.

6 recordsLinked to original sources

Electrowetting with electrolytes.

A theory of electrowetting is developed for systems containing an interface between two immiscible electrolytic solutions. Laws for the dependence of contact angle on electrode potential are presented. Ionic impermeability of the liquid-liquid interface and nonlinear double-layer responses rationalize observed phenomena such as contact-angle saturation and droplet contraction or detachment. The theoretical results can be applied to design new, precisely controllable microfluidic devices.

Journal Article↗

On the physical nature of mesophases of guanosine gels.

The unusual columnar aqueous mesophases of self-assembled guanosine stacks, such as 2'-deoxyguanosine 5'-monophosphate and 2'-deoxyguanosine 3'-monophosphate, are analyzed in terms of a general theory of azimuthal correlations between the charged helices. This theory considers forces, specific to the helical structure of each macromolecule, which depend on the azimuthal orientations of the molecules about their long axes. More specifically, in determining the magnitudes and decay lengths of these helix specific forces we utilize the Kornyshev-Leikin theory of electrostatic interaction between helical macromolecules and quantitatively fit experimental data. Together with explaining a number of the observed features of these mesophases, several new effects are predicted. Possible limitations and developments of our theoretical model are discussed, as well as new experiments to test the implications of the theory.

Deoxyguanine Nucleotides↗

In situ superexchange electron transfer through a single molecule: a rectifying effect.

An increasingly comprehensive body of literature is being devoted to single-molecule bridge-mediated electronic nanojunctions, prompted by their prospective applications in molecular electronics and single-molecule analysis. These junctions may operate in gas phase or electrolyte solution (in situ). For biomolecules, the latter is much closer to their native environment. Convenient target molecules are aromatic molecules, peptides, oligonucleotides, transition metal complexes, and, broadly, molecules with repetitive units, for which the conducting orbitals are energetically well below electronic levels of the solvent. A key feature for these junctions is rectification in the current-voltage relation. A common view is that asymmetric molecules or asymmetric links to the electrodes are needed to acquire rectification. However, as we show here, this requirement could be different in situ, where a structurally symmetric system can provide rectification because of the Debye screening of the electric field in the nanogap if the screening length is smaller than the bridge length. The Galvani potentials of each electrode can be varied independently and lead to a transistor effect. We explore this behavior for the superexchange mechanism of electron transport, appropriate for a wide class of molecules. We also include the effect of conformational fluctuations on the lowest unoccupied molecular orbital (LUMO) energy levels; that gives rise to non-Arrhenius temperature dependence of the conductance, affected by the molecule length. Our study offers an analytical formula for the current-voltage characteristics that demonstrates all these features. A detailed physical interpretation of the results is given with a discussion of reported experimental data.

Electric Conductivity↗

Direct observation of azimuthal correlations between DNA in hydrated aggregates.

This study revisits the classical x-ray diffraction patterns from hydrated, noncrystalline fibers originally used to establish the helical structure of DNA. We argue that changes in these diffraction patterns with DNA packing density reveal strong azimuthally dependent interactions between adjacent molecules up to approximately 40 A interaxial or approximately 20 A surface-to-surface separations. These interactions appear to force significant torsional "straightening" of DNA and strong azimuthal alignment of nearest neighbor molecules. The results are in good agreement with the predictions of recent theoretical models relating DNA-DNA interactions to the helical symmetry of their surface charge patterns.

Biophysics↗

Approximate symmetry laws for percolation in complex systems: Percolation in polydisperse composites.

The concept of so-called global symmetry of percolation models is discussed and extended to multicolored models. An integral equation is obtained, which determines the partial percolation probabilities P(a) for sites of color a. This equation is applied to a polydisperse particulate composite: a mixture of conducting (of relative fraction x(m)) and nonconducting spheres with distributions of sizes n(m)(R) and n(i)(R), respectively. We find the probability P(R) for a conducting particle of radius R to belong to the percolation cluster as a function of x(m) and a functional of n(m)(R') and n(i)(R'). The percolation threshold x is shown to decrease with increasing dispersion Delta of particle sizes. A simple law x=1/(3[1+(Delta/4)]) is obtained in the range of moderate dispersions. The theory is applicable also to a mixture of electronic and ionic conductors.

Journal Article↗