Biomedical subjects

Alfons G Hoekstra

Publications and source records attributed to Alfons G Hoekstra.

5 recordsLinked to original sources

PubMed2006

Convergence of the discrete dipole approximation. I. Theoretical analysis.

We perform a rigorous theoretical convergence analysis of the discrete dipole approximation (DDA). We prove that errors in any measured quantity are bounded by a sum of a linear term and a quadratic term in the size of a dipole d when the latter is in the range of DDA applicability. Moreover, the linear term is significantly smaller for cubically than for noncubically shaped scatterers. Therefore, for small d, errors for cubically shaped particles are much smaller than for noncubically shaped ones. The relative importance of the linear term decreases with increasing size; hence convergence of DDA for large enough scatterers is quadratic in the common range of d. Extensive numerical simulations are carried out for a wide range of d. Finally, we discuss a number of new developments in DDA and their consequences for convergence.

Journal Article↗

PubMed2006

Convergence of the discrete dipole approximation. II. An extrapolation technique to increase the accuracy.

We propose an extrapolation technique that allows accuracy improvement of discrete dipole approximation computations. The performance of this technique was studied empirically on the basis of extensive simulations for five test cases using many different discretizations. The quality of the extrapolation improves with refining discretization, reaching extraordinary performance especially for cubically shaped particles. A 2-order-of-magnitude decrease of error is demonstrated. We also propose estimates of the extrapolation error, which are proven to be reliable. Finally, we propose a simple method to directly separate shape and discretization errors and illustrate this for one test case.

Journal Article↗

PubMed2005

Experimental and theoretical study of light scattering by individual mature red blood cells by use of scanning flow cytometry and a discrete dipole approximation.

Elastic light scattering by mature red blood cells (RBCs) was theoretically and experimentally analyzed by use of the discrete dipole approximation (DDA) and scanning flow cytometry (SFC), respectively. SFC permits measurement of the angular dependence of the light-scattering intensity (indicatrix) of single particles. A mature RBC is modeled as a biconcave disk in DDA simulations of light scattering. We have studied the effect of RBC orientation related to the direction of the light incident upon the indicatrix. Numerical calculations of indicatrices for several axis ratios and volumes of RBC have been carried out. Comparison of the simulated indicatrices and indicatrices measured by SFC showed good agreement, validating the biconcave disk model for a mature RBC. We simulated the light-scattering output signals from the SFC with the DDA for RBCs modeled as a disk-sphere and as an oblate spheroid. The biconcave disk, the disk-sphere, and the oblate spheroid models have been compared for two orientations, i.e., face-on and rim-on incidence, relative to the direction of the incident beam. Only the oblate spheroid model for rim-on incidence gives results similar to those of the rigorous biconcave disk model.

Algorithms↗

PubMed2004

Single-particle sizing from light scattering by spectral decomposition.

A Fourier transform was applied to size an individual spherical particle from an angular light-scattering pattern. The position of the peak in the amplitude spectrum has a strong correlation with the particle size. A linear equation retrieved from regression analysis of theoretically simulated patterns provides a relation between the particle size and the location of the amplitude spectrum's peak. The equation can be successfully applied to characterize particles of size parameters that range from 8 to 180 (corresponding to particle sizes that range from 1.2 to 27.2 microm at a wavelength of 0.633 microm). The precision of particle sizing depends on the refractive index and reaches a value of 60 nm within refractive-index region from 1.35 to 1.70. We have analyzed four samples of polystyrene microspheres with mean diameters of 1.9, 2.6, 3.0, and 4.2 microm and a sample of isovolumetrically sphered erythrocytes with a scanning flow cytometer to compare the accuracy of our new method with that of others.

Algorithms↗

PubMed2004

Polyp oriented modelling of coral growth.

The morphogenesis of colonial stony corals is the result of the collective behaviour of many coral polyps depositing coral skeleton on top of the old skeleton on which they live. Yet, models of coral growth often consider the polyps as a single continuous surface. In the present work, the polyps are modelled individually. Each polyp takes up resources, deposits skeleton, buds off new polyps and dies. In this polyp oriented model, spontaneous branching occurs. We argue that branching is caused by a so called "polyp fanning effect" by which polyps on a convex surface have a competitive advantage relative to polyps on a flat or concave surface. The fanning effect generates a more potent branching mechanism than the Laplacian growth mechanism that we have studied previously. We discuss the application of the polyp oriented model to the study of environmentally driven morphological plasticity in stony corals. In a few examples we show how the properties of the individual polyps influence the whole colony morphology. In our model, the spacing of polyps influences the thickness of coral branches and the overall compactness of the colony. Density variations in the coral skeleton may also be important for the whole colony morphology, which we address by studying two variants of the model. Finally, we discuss the importance of small scale resource translocation in the coral colony and its effects on the morphology of the colony.

Animals↗