Biomedical subjects

Ali Bilgin

Publications and source records attributed to Ali Bilgin.

4 recordsLinked to original sources

PubMed2006

Efficient transmission of compressed data for remote volume visualization.

One of the goals of telemedicine is to enable remote visualization and browsing of medical volumes. There is a need to employ scalable compression schemes and efficient client-server models to obtain interactivity and an enhanced viewing experience. First, we present a scheme that uses JPEG2000 and JPIP (JPEG2000 Interactive Protocol) to transmit data in a multi-resolution and progressive fashion. The server exploits the spatial locality offered by the wavelet transform and packet indexing information to transmit, in so far as possible, compressed volume data relevant to the clients query. Once the client identifies its volume of interest (VOI), the volume is refined progressively within the VOI from an initial lossy to a final lossless representation. Contextual background information can also be made available having quality fading away from the VOI. Second, we present a prioritization that enables the client to progressively visualize scene content from a compressed file. In our specific example, the client is able to make requests to progressively receive data corresponding to any tissue type. The server is now capable of reordering the same compressed data file on the fly to serve data packets prioritized as per the client's request. Lastly, we describe the effect of compression parameters on compression ratio, decoding times and interactivity. We also present suggestions for optimizing JPEG2000 for remote volume visualization and volume browsing applications. The resulting system is ideally suited for client-server applications with the server maintaining the compressed volume data, to be browsed by a client with a low bandwidth constraint.

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PubMed2005

Processing of radial fast spin-echo data for obtaining T2 estimates from a single k-space data set.

Radially acquired fast spin-echo data can be processed to obtain T2-weighted images and a T2 map from a single k-space data set. The general approach is to use data at a specific TE (or narrow TE range) in the center of k-space and data at other TE values in the outer part of k-space. With this method high-resolution T2-weighted images and T2 maps are obtained in a time efficient manner. The mixing of TE data, however, introduces errors in the T2-weighted images and T2 maps that affect the accuracy of the T2 estimates. In this work, various k-space data processing methods for reconstructing T2-weighted images and T2 maps from a single radial fast spin-echo k-space data set are analyzed in terms of the accuracy of T2 estimates. The analysis is focused on the effect of image artifacts, object dependency, and noise on the T2 estimates. Results are presented in computer-generated phantoms and in vivo.

Algorithms↗

PubMed2005

Interleaved acquisition of lipid and water images of the heart using a double-inversion fast spin-echo method.

In this work we present a new method for the improved detection of lipid infiltration in the heart. The method employs a double-inversion fast spin-echo technique where the acquisition of water- and lipid-suppressed k-space data is alternated between TR periods to produce co-registered lipid and water images from data acquired in a breath hold. The lipid and water images can then be combined to generate a lipid/water image with reduced artifacts due to flow and excellent contrast between lipid and myocardium. The method is demonstrated in ex vivo tissue and in vivo. This novel method may improve the detection of lipid infiltration in the heart in pathologies such as arrhythmogenic right ventricular dysplasia.

Algorithms↗

PubMed2005

Joint source/channel coding for image transmission with JPEG2000 over memoryless channels.

The high compression efficiency and various features provided by JPEG2000 make it attractive for image transmission purposes. A novel joint source/channel coding scheme tailored for JPEG2000 is proposed in this paper to minimize the end-to-end image distortion within a given total transmission rate through memoryless channels. It provides unequal error protection by combining the forward error correction capability from channel codes and the error detection/localization functionality from JPEG2000 in an effective way. The proposed scheme generates quality scalable and error-resilient codestreams. It gives competitive performance with other existing schemes for JPEG2000 in the matched channel condition case and provides more graceful quality degradation for mismatched cases. Furthermore, both fixed-length source packets and fixed-length channel packets can be efficiently formed with the same algorithm.

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