Biomedical subjects

Anand Jagota

Publications and source records attributed to Anand Jagota.

9 recordsLinked to original sources

PubMed2006

Line of charges in electrolyte solution near a half-space I. Counterion condensation.

The effect of a half-space on counterion condensation around a line of charges in electrolyte solution is examined in the framework of Debye-Hückel electrostatics. The half-space substrate is allowed to be a conductor, a dielectric, or a semiconductor. Counterions are predicted to be released completely as the line of charges approaches a conducting substrate. When it approaches a dielectric substrate, depending on the ratio of solvent to substrate dielectric constant, there are three possibilities: (1) epsilon(sol)/epsilon(sub) < 1; the counterions are partially (or completely) released; (2) epsilon(sol)/epsilon(sub) = 1; the amount of condensation remains unchanged; and (3) epsilon(sol)/epsilon(sub) > 1; more counterions condense. Depending on the relative magnitude of screening lengths in the semiconductor and in the solution, its effect on condensation follows either that of a metal or that of a dielectric. For the case of a moderately doped silicon substrate, condensation is predicted to be similar to that for a dielectric.

Journal Article↗

PubMed2006

Line of charges in electrolyte solution near a half-space II. Electric field of a single charge.

The electric potential of a single charge in electrolyte solution near a dielectric or a semiconducting half-space is determined in closed form when the electrostatics is described by the linear Debye-Hückel (D-H) equation. The electric potential strongly depends on the Debye length of the solution, the substrate-to-solution dielectric constant ratio, and the Debye length of the semiconductor. The technique of Hankel transforms is shown to be a useful tool in solving such axially symmetric boundary value problems for the D-H equation.

Journal Article↗

PubMed2006

Controlled two-dimensional pattern of spontaneously aligned carbon nanotubes.

We report a simple solution process to form controlled patterns of aligned single-walled carbon nanotubes on solid substrates. The essential step of the process is to deposit a dilute solution of DNA-wrapped carbon nanotubes (DNA-CNTs) on a SiO(2) surface covered with a thin hydrophobic layer. This leads to deposition of fully aligned CNTs. The alignment pattern can be controlled by metal electrodes in the deposition region and can be quantitatively modeled by the behavior of a quasi-two-dimensional DNA-CNT nematic phase near the solution/SiO(2) interface. These results point to the possibility of rational design and economical fabrication of CNT alignment patterns on solid substrates.

Crystallization↗

PubMed2005

Adhesion enhancement in a biomimetic fibrillar interface.

Two important putative functions of the fibrillar contact interfaces commonly found in lizards and insects are to provide contact compliance and enhanced adhesion. To explore the question of whether a fibrillar architecture inherently enhances adhesion, we constructed model structures consisting of thin sheets of poly(vinyl butyral) (PVB) bonded on one of their thin sides to glass plates. The PVB samples had two flat, unstructured regions interrupted by a central fibrillar region along the bonded interface. The effect of the fibrillar geometry on the performance of the adhesive bond was tested using a tensile pull-off test, in which failure occurred by interfacial crack propagation, starting at an end where a crack initiator was introduced. We observed that fibrils in all samples fail consistently at the same critical stress, which is consistent with a previous theoretical result we have determined for flaw insensitivity during fibrillar pull-off. In addition, we measured the energy release rate required to fail the interface in the fibrillar region to be about an order of magnitude greater than that in the non-fibrillar region. We present experimental evidence demonstrating that this increase results partly from dissipation of strain energy stored in the fibrils.

Adhesiveness↗

PubMed2005

Theory of structure-based carbon nanotube separations by ion-exchange chromatography of DNA/CNT hybrids.

Single-stranded DNA wrap helically around individual single-walled carbon nanotubes to form DNA/CNT hybrids, which are both stable and dispersible in aqueous solution. Subjected to ion-exchange chromatography, a hybrid elutes at an ionic strength that depends on the electronic character and diameter of the core nanotube, thus providing a mechanism for separating nanotubes by chirality. We present a theoretical model for this separation process that explains all the salient features observed experimentally to date, and provides accurate predictions for critical elution salt concentration. The competition between adsorption on the stationary phase and counterion condensation in the mobile phase is characterized by estimating the difference in free energy between the two states of the hybrid. Parametric study of the DNA wrapping geometry, SWNT dielectric properties, hybrid length, and diameter indicate that the elution is most sensitive to the hybrid's effective charge density, primarily governed by the DNA helical pitch. The model correctly predicts hybrids with metallic nanotubes are weaker binding than hybrids with semiconducting nanotubes and larger diameter nanotubes are eluted at later times.

Adsorption↗

PubMed2004

Effect of stamp deformation on the quality of microcontact printing: theory and experiment.

Microcontact printing (microCP) is an effective way to generate micrometer- or submicrometer-sized patterns on a variety of substrates. However, the fidelity of the final pattern depends critically on the coupled phenomena of stamp deformation, fluid transfer between surfaces, and the ability of the ink to self-assemble on the substrate. In particular, stamp deformation can produce undesirable effects that limit the practice and precision of microCP. Experimental observations and comparison with theoretical predictions are presented here for three of the most undesirable consequences of stamp deformation: (1) roof collapse of low aspect ratio recesses, (2) buckling of high aspect ratio plates, and (3) lateral sticking of high aspect ratio plates. Stamp behavior was observed visually with an inverted optical microscope while load-displacement data were collected during compression and retraction of stamps. Additionally, a "robotic stamper" was used to deliver ink patterns in precise locations on substrates. These monomolecular ink patterns were then observed in high contrast using the surface potential scanning mode of an atomic force microscope. Theoretical models based on continuum mechanics were used to accurately predict both physical deformation of the stamp and the resultant inking patterns. The close agreement between these models and the experimental data presented clearly demonstrates the essential considerations one must weigh when designing stamp geometry, material, and loading conditions for optimal pattern fidelity.

Journal Article↗

PubMed2003

Structure-based carbon nanotube sorting by sequence-dependent DNA assembly.

Wrapping of carbon nanotubes (CNTs) by single-stranded DNA (ssDNA) was found to be sequence-dependent. A systematic search of the ssDNA library selected a sequence d(GT)n, n = 10 to 45 that self-assembles into a helical structure around individual nanotubes in such a way that the electrostatics of the DNA-CNT hybrid depends on tube diameter and electronic properties, enabling nanotube separation by anion exchange chromatography. Optical absorption and Raman spectroscopy show that early fractions are enriched in the smaller diameter and metallic tubes, whereas late fractions are enriched in the larger diameter and semiconducting tubes.

Anions↗

PubMed2003

Peptides with selective affinity for carbon nanotubes.

Because of their extraordinary electronic and mechanical properties, carbon nanotubes have great potential as materials for applications ranging from molecular electronics to ultrasensitive biosensors. Biological molecules interacting with carbon nanotubes provide them with specific chemical handles that would make several of these applications possible. Here we use phage display to identify peptides with selective affinity for carbon nanotubes. Binding specificity has been confirmed by demonstrating direct attachment of nanotubes to phage and free peptides immobilized on microspheres. Consensus binding sequences show a motif rich in histidine and tryptophan, at specific locations. Our analysis of peptide conformations shows that the binding sequence is flexible and folds into a structure matching the geometry of carbon nanotubes. The hydrophobic structure of the peptide chains suggests that they act as symmetric detergents.

Microspheres↗

PubMed2003

DNA-assisted dispersion and separation of carbon nanotubes.

Carbon nanotubes are man-made one-dimensional carbon crystals with different diameters and chiralities. Owing to their superb mechanical and electrical properties, many potential applications have been proposed for them. However, polydispersity and poor solubility in both aqueous and non-aqueous solution impose a considerable challenge for their separation and assembly, which is required for many applications. Here we report our finding of DNA-assisted dispersion and separation of carbon nanotubes. Bundled single-walled carbon nanotubes are effectively dispersed in water by their sonication in the presence of single-stranded DNA (ssDNA). Optical absorption and fluorescence spectroscopy and atomic force microscopy measurements provide evidence for individually dispersed carbon nanotubes. Molecular modelling suggests that ssDNA can bind to carbon nanotubes through pi-stacking, resulting in helical wrapping to the surface. The binding free energy of ssDNA to carbon nanotubes rivals that of two nanotubes for each other. We also demonstrate that DNA-coated carbon nanotubes can be separated into fractions with different electronic structures by ion-exchange chromatography. This finding links one of the central molecules in biology to a technologically very important nanomaterial, and opens the door to carbon-nanotube-based applications in biotechnology.

Biotechnology↗