A self-assembled pyrrolic cage receptor specifically recognizes beta-glucopyranosides.
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Bridged Bicyclo Compounds↗
Biomedical subjects
Andrea Ienco
Publications and source records attributed to Andrea Ienco.
A counterintuitive structural effect of metal-metal bond protonation and its electronic underpinnings.
Protonation across the metal-metal bond in the complexes [(CO)(2)M(mu-dppm)(mu-PtBu(2))(mu-H)M(CO)(2)] (M=Fe or Ru, dppm=Ph(2)PCH(2)PPh(2)) induces M-M bond shortening of up to about 0.05 A. DFT calculations on simplified iron models reproduce this trend well. Conversely, the computations show that the M-M distance in the dimer [{Cp*Ir(CO)}(2)] lengthens with two consecutive protonations, but there are no crystal structure determinations to highlight the effects on the Ir-Ir bond. DFT calculations and the analogous cobalt system confirm that the transformation of a two-electron, two-center (2e-2c) bond into a 2e-3c bond is accompanied by the predicted elongation. An MO analysis indicated similar nature and evolution of the M-M bonding these cases. In particular, the HOMOs of the mono-hydrido cations [Cp(CO)M(mu-H)M(CO)Cp](+) (M=Ir, Co) have evident M-M bent-bond character, and hence subsequent protonation invariably causes a decrease in the bond index. The Fe(2) and Co(2) systems have also been analyzed with the quantum theory of atoms in molecules (QTAIM) method, but in no case was an M-M bond critical point located unless an artificially shorter M-M distance was imposed. However, the trends for the atoms-in-molecules (AIM) bond delocalization indexes delta(M-M) confirm the overall M-M bond weakening on protonation. In conclusion, all the computational results for the iron system indicate that the paradigm of a direct correlation between bond strength and distance is not always applicable. This is attributable to a very flat potential energy surface and various competing effects imposed by the bridging ligands.
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Inorganic-organic hybrids of the p,p'-diphenylmethylenediphosphinate, pcp2-. Synthesis, characterization, and XRPD structures of [Sn(pcp)] and [Cu(pcp)].
Two new inorganic-organic polymeric hybrids [Sn(pcp)] and [Cu(pcp)], pcp=CH2(PhPO2)2(2-), have been synthesized and structurally characterized. The tin derivative has been obtained by reaction of the p,p'-diphenylmethylenediphosphinic acid (H2pcp) in water with SnCl2.2H2O, while the copper derivative has been synthesized through a hydrothermal reaction from the same H2pcp acid and Cu(O2CMe)2.H2O. The structures of these compounds have been solved "ab initio" by X-ray powder diffraction (XRPD) data. [Sn(pcp)] has a ladder-like polymeric structure, with tin(II) centers bridged by diphenylmethylenediphosphinate ligands, and alternating six- and eight-membered rings. The hemilectic coordination around the metal shows the tin(II) lone pair to be operative, resulting in significant interaction mainly with a C-C bond of one phenyl ring. The [Cu(pcp)] complex displays a polymeric columnar structure formed by two intersecting sinusoidal ribbons of copper(II) ions bridged by the bifunctional phosphinate ligands. The intersections of the ribbons are made of dimeric units of pentacoordinated copper ions. Crystal data for [Sn(pcp)]: monoclinic, space group P2(1)/c, a=11.2851(1), b=15.4495(6), c=8.6830(1) A, beta=107.546(1) degrees, V=1443.44(9) A, Z=4. Crystal data for [Cu(pcp)]: triclinic, space group P, a=10.7126(4), b=13.0719(4), c=4.9272(3) A, alpha=92.067(5), beta=95.902(7), gamma=87.847(4) degrees, V=685.47(7), Z=2. The tin compound has been characterized by 119Sn MAS NMR (magic-angle spinning NMR), revealing asymmetry in the valence electron cloud about tin. Low-temperature magnetic measurements of the copper compound have indicated the presence of weak antiferromagnetic interactions below 50 K.
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Supramolecular interactions as determining factors of the geometry of metallic building blocks: tetracarboxylate dimanganese species.
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Formation and characterization of the hexanuclear platinum cluster [Pt6(mu-PBu(t)2)4(CO)6](CF3SO3)2 through structural, electrochemical, and computational analyses.
The reaction between equimolar amounts of Pt(3)(mu-PBu(t)()(2))(3)(H)(CO)(2), Pt(3)()H, and CF(3)SO(3)H under CO atmosphere affords the triangular species [Pt(3)(mu-PBu(t)()(2))(3)(CO)(3)]X, [Pt(3)()(CO)(3)()(+)()]X (X = CF(3)SO(3)(-)), characterized by X-ray crystallography, or in an excess of acid, [Pt(6)(mu-PBu(t)()(2))(4)(CO)(6)]X(2), [Pt(6)()(2+)()]X(2)(). Structural determination shows the latter to be a rare hexanuclear cluster with a Pt(4) tetrahedral core formed by joining the unbridged sides of two orthogonal Pt(3) triangles. The dication Pt(6)()(2+)() features also extensive redox properties as it undergoes two reversible one-electron reductions to the congeners [Pt(6)(mu-PBu(t)()(2))(4)(CO)(6)](+) (Pt(6)()(+)(), E(1/2) = -0.27 V) and Pt(6)(mu-PBu(t)()(2))(4)(CO)(6) (Pt(6)(), E(1/2) = -0.54 V) and a further quasi-reversible two-electron reduction to the unstable dianion Pt(6)()(2)()(-)() (E(1/2) = -1.72 V). The stable radical (Pt(6)()(+)()) and diamagnetic (Pt(6)()) species are also formed via chemical methods by using 1 or 2 equiv of Cp(2)Co, respectively; further reduction of Pt(6)()(2+)() causes fast decomposition. The chloride derivatives [Pt(6)(mu-PBu(t)()(2))(4)(CO)(5)Cl]X, (Pt(6)()Cl(+)())X, and Pt(6)(mu-PBu(t)()(2))(4)(CO)(4)Cl(2), Pt(6)()Cl(2)(), observed as side-products in some electrochemical experiments, were prepared independently. The reaction leading to Pt(3)()(CO)(3)()(+)() has been analyzed with DFT methods, and identification of key intermediates allows outlining the reaction mechanism. Moreover, calculations for the whole series Pt(6)()(2+)() --> Pt(6)()(2)()(-)()( )()afford the otherwise unknown structures of the reduced derivatives. While the primary geometry is maintained by increasing electron population, the system undergoes progressive and concerted out-of-plane rotation of the four phosphido bridges (from D(2)(d)() to D(2) symmetry). The bonding at the central Pt(4) tetrahedron of the hexanuclear clusters (an example of 4c-2e(-) inorganic tetrahedral aromaticity in Pt(6)()(2+)()) is explained in simple MO terms.
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Activation of molecular hydrogen over a binuclear complex with Rh2S2 core: DFT calculations and NMR mechanistic studies.
The dicationic complex [(triphos)Rh(mu-S)(2)Rh(triphos)](2+), 1 (modeled as 1c) [triphos = CH(3)C(CH(2)PPh(2))(3)], is known to activate two dihydrogen molecules and produce the bis(mu-hydrosulfido) product [(triphos)(H)Rh(mu-SH)(2)Rh(H)(triphos)](2+), 2 (modeled as 2b), from which 1 is reversibly obtained. The possible steps of the process have been investigated with DFT calculations. It has been found that each d(6) metal ion in 1c, with local square pyramidal geometry, is able to anchor one H(2) molecule in the side-on coordination. The step is followed by heterolytic splitting of the H-H bond over one adjacent and polarized Rh-S linkage. The process may be completed before the second H(2) molecule is added. Alternatively, both H(2) molecules are trapped by the Rh(2)S(2) core before being split in two distinct steps. Since the ambiguity could not be solved by calculations, (31)P and (1)H NMR experiments, including para-hydrogen techniques, have been performed to identify the actual pathway. In no case is there experimental evidence for any Rh-(eta(2)-H(2)) adduct, probably due to its very short lifetime. Conversely, (1)H NMR analysis of the hydride region indicates only one reaction intermediate which corresponds to the monohydride-mu-hydrosulfide complex [(triphos)Rh(H)(mu-SH)(mu-S)Rh(triphos)](2+) (3) (model 5a). This excludes the second hypothesized pathway. From an energetic viewpoint the computational results support the feasibility of the whole process. In fact, the highest energy for H(2) activation is 8.6 kcal mol(-1), while a larger but still surmountable barrier of 34.6 kcal mol(-1) is in line with the reversibility of the process.
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Electronic factors affecting second-order NLO properties: case study of four different push-pull bis-dithiolene nickel complexes.
The paper presents a detailed experimental and theoretical study of the four mixed nickel-bisdithiolene complexes [Ni(Pr(i)(2)pipdt)(dmit)] (1b, Pr(i)(2)pipdt = 1,4-diisopropyl-piperazine-3,2-dithione; dmit = 1,3-dithiolo-2-tione-4,5-dithiolato), [Ni(R(2)pipdt)(mnt)] (2b", R = 2-ethylhexyl; mnt = maleonitriledithiolato), [Ni(Pr(i)(2)timdt)(dmit)] (3b, Pr(i)(2)timdt = 1,3-diisopropyl-imidazoline-2,4,5-trithione), and [Ni(Pr(i)(2)timdt)(mnt)] (4b), and their models. All the complexes, with common (C(2)S(2))Ni(C(2)S(2)) core and two different terminal groups, are uncharged and square-planar coordinated. Previous measurements of the first molecular hyperpolarizability indicated that some of the species are potential NLO chromophores due to the pi-delocalized character of two frontier levels (HOMO and LUMO) which is asymmetrically perturbed by the combination of one push (R(2)pipdt, R(2)timdt) with one pull ligand (dmit and mnt). The X-ray structure of complex 1b is presented and its geometry is compared with those available in the literature for the four types of complexes under study. The results of electrochemical and spectroscopic measurements (oxidation and reduction potentials, IR, dipole moment, molecular absorptivities, etc.) indicate rather different responses between the pairs of complexes 1-2 and 3-4. Hence, DFT calculations on the model compounds 1a-4a, where hydrogen atoms replace the alkyl groups of R(2)pipdt and R(2)timdt, have been carried out to correlate geometries and electronic structures. Moreover, the first molecular hyperpolarizabilities have been calculated and their components have been analyzed with the simplest two-level approximation. The derived picture highlights the different roles of the two push and pull ligands, but also the peculiar perturbation of the pi-electron density induced by the terminal CS(3) grouping of the ligand dmit.
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Nonclassical vs classical metal...H3C-C interactions: accurate characterization of a 14-electron ruthenium(II) system by neutron diffraction, database analysis, solution dynamics, and DFT studies.
A neutron diffraction study of the complex RuCl(2)[PPh(2)(2,6-Me(2)C(6)H(3))](2) (1) defines the precise nature of the delta agostic interactions between the unsaturated metal center and two o-methyl groups of the xylyl substituents. The CH(3) carbon atoms lie in the RuP(2) equatorial plane with Ru...C distances of 2.637(7) and 2.668(6) A, whereas four short Ru.H distances (from 2.113(11) to 2.507(11) A) indicate that each methyl group interacts with two C-H bonds. A survey of the X-ray structures with beta, gamma, delta, and epsilon M...H(3)C-C moieties (no neutron data have been previously reported) shows a linear correlation between the angle M.C-C and the torsion of the methyl group about the C-C bond. Thus, the agostic interactions span the range between the classical (M...eta(2)-HC) and the nonclassical (M...eta(3)-H(2)C) types. A solution study of 1 shows intramolecular rearrangement of each xylyl substituent that equilibrates the environments of its two ortho CH(3) groups. Activation parameters, evaluated from the analysis of (1)H NMR line shape as a function of temperature, are Delta H(++) = 9.6 +/- 0.2 kcal mol(-1) with Delta S(++) = -15.4 +/- 0.7 eu (CDCl(3)). The related 14-electron complexes RuX(2)[PPh(2)(2,6-Me(2)C(6)H(3))](2) (X = I, 2; NCO, 3), prepared from 1 and NaX, show a similar dynamic process in solution, with the iodo derivative displaying the most hindered rotation of the xylyl group. A DFT optimization of the complex RuCl(2)[PH(2)(2,6-Me(2)C(6)H(3))](2) (1a) reproduces well the nonclassical Ru...eta(3)-H(2)C agostic mode, whereas the classical Ru...eta(2)-HC one corresponds to a transition state 1b, destabilized by 3.4 kcal mol(-1). A similar barrier (ca. 3.8 kcal mol(-1)) is calculated for the xylyl rotation in the further simplified model RuCl(2)[PH(2)(2,6-Me(2)C(6)H(3))][PH(2)CH[double bond]CHCH(3)] (1c), the absence of bulky phenyl substituents being largely responsible for the difference with respect to the experimental value. Finally, the MO analysis addresses the intrinsic stability of the 14-electron complex RuCl(2)(PH(3))(2) and, in agostic complexes, accounts for the different interactions between the methyl group and the metal atom in relation to the length of their interconnecting chain.
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Main group element nets to a T.
T-shaped nets (three-coordinated nets with an angular metric, bond angles near 90 degrees, 90 degrees, 180 degrees) are found in a number of extended structures. We explore in this paper the geometrical and electronic consequences of a stricter T-shape metric, where the distances between the vertices of the net are approximately equal and in the range of a chemical bond. Every atom in such a net has a T-shaped environment. One can think of these nets as extensions of BrF(3) or of substructures of various extended tellurium compounds. Several construction principles are found which allow an enumeration of a variety of one-, two-, and three-dimensional T-shape nets; not every three-coordinated net lends itself to the stricter geometrical and distance metric. Not everything is possible; there are no zero-dimensional T-nets, and none made entirely of three atom segments. Previous ideas on electron-rich multicenter bonding lead to a simple way of calculating the magic electron counts for each net; these lie in the range of 6 to 6.67.
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Activation and functionalization of white phosphorus at rhodium: experimental and computational analysis of the [(triphos)Rh (eta1:eta2-P4RR')]Y complexes (triphos=MeC(CH2PPh2)3; R=H, Alkyl, Aryl; R'=2 electrons, H, Me).
Thermal reaction of white phosphorus with [(triphos)RhH(3)] (1) in THF affords [(triphos)Rh(eta(1):eta(2)-P(4)H)] (2), triphos=MeC(CH(2)PPh(2))(3). Similar complexes [(triphos)Rh(eta(1):eta(2)-P(4)R)] (R=Me (7), Et (8), Ph (9)) also form at lower temperature by the reaction of P(4) and [(triphos)Rh(R)(eta(2)-C(2)H(4))] with elimination of ethene. In contrast, a double-insertion process follows the reaction of [(triphos)Rh(H)(eta(2)-C(2)H(4))] and P(4) to generate tetraphosphido ethyl complex 8. Compounds 2, 7, 8 and 9 are thermally unstable and eventually decompose into the cyclotriphosphorus complex [(triphos)Rh(eta(3)-P(3))] (3) plus other unidentified phosphorus-containing species. Otherwise, PH(3) or PH(2)R is generated in the presence of H(2). The formation of PH(3) and 3 is quantitative starting from the precursor 2. The electrophilic attack of MeOTf or HBF(4) on the P(4)R ligand in the complexes 2, 7-9 is regioselective, and yields a cationic product of formula [(triphos)Rh(eta(1):eta(2)-P(4)RR')](+). The direct attack on the substituted p-R phosphorus atom is demonstrated by crossing experiments. Complexes of the latter type have been isolated in the solid state for the combinations R=H and R'=Me (11) or R=Ph and R'=Me (12). The latter species, [(triphos)Rh(eta(1):eta(2)-P(4)PhMe')]OTf.2 CH(2)Cl(2) (OTf=triflate), has been characterised by X-ray methods. The geometry at the metal is better described as a trigonal bipyramidal than pseudo-octahedral. In fact, the P(4)RR' unit acts as a bidentate ligand with its exocyclic PR(2) donor group and the endocyclic, dihapto-coordinated Pdbond;P linkage. The latter group lies in the equatorial plane, in a similar way to a classic olefin ligand that is coordinated to a butterfly-shaped L(4)M fragment (M=d(8)). DFT calculations on a model of 2 and all possible protonated isomers confirm that double substitution at the exocyclic P-donor positions of the open P(4) unit is energetically favoured. A multinuclear and multidimensional NMR analysis confirms that this structure is maintained in solution for both the parent and the protonated compounds.
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First example of a tetra-carboxylate bridged dimanganese species.
The compound [Mn(tda)(bipy)] (tda = S(CH2COO)2(2-)) features the first structurally characterized tetra-carboxylate dimanganese antiferromagnetic system with 'copper acetate' core; the binuclear units, completed by bipyridine chelates, are doubly chained by the tda anions that adopt an unprecedented mu,mu'-eta1,eta1,eta1,eta1 coordination mode.
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Different complexation properties of some hydroxy keto heterocycles toward beryllium(II) in aqueous solutions: experimental and theoretical studies.
Four heterocycles containing hydroxy and keto functionalities have been tested as chelating agents of beryllium(II). These are in the order (i) 3-hydroxy-2-methyl-4H-pyran-4-one (maltol, Hma), (ii) 5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one (kojic acid, Hka), (iii) 3-hydroxy-1,2-dimethyl-4-pyridinone (Hdpp), (iv) 1-(3-hydroxy-2-furanyl)ethanone (isomaltol, Hima). Although the skeletons of the first three species, with one nitrogen or oxygen heteroatom at the six-membered ring, are almost superimposable, straightforward synthesis and crystallization is achieved only for the 1:2 adduct Be(dpp)(2), 1. Also the complex Be(ima)(2), 2, precipitates in high yield but the ima(-) ligand has a different skeletal structure. X-ray determinations of 1 and 2 showed that the Be(2+) ion is pseudotetrahedrally coordinated by two chelating ligands with slightly asymmetric Be-O(alkoxo) and Be-O(keto) bonds. The complex Be(ma)(2) precipitates in low yields together with large amounts of unreacted Hma while, under the same conditions, no trace of the analogous species Be(ka)(2) has been observed. This paper presents the results of potentiometric and NMR studies in the aqueous solutions as well as of DFT structural optimizations for all of the free acids, their associated bases, and the adducts of the type [BeL(H(2)O)(2)](+) and BeL(2) in the gas phase. It is consistently found that the basicity of the ligands and the stability of their complexes decrease in the order dpp(-) > ma(-) > ka(-) > ima(-). In solution, all of the anionic ligands form adducts of the type [BeL(H(2)O)(2)](+) at low pH values, whereas higher concentrations of the free anion are required to form 1:2 adducts. The pH, the basicity, and the stability constants of the complexes as well as the formation of competing beryllium hydroxide species are strictly correlated factors for the obtainment of the latter type of adduct. The DFT calculations account nicely for the different donor powers of the various chelates in terms of electronic redistribution and associated energetics.
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Unprecedented eta(1)-P(basal) coordination of P(4)X(3) molecules (X = S, Se). An experimental and theoretical study of the apical vs basal complexation dichotomy.
Reaction of [(triphos)Re(CO)(2)(OTf)] (1) [triphos = MeC(CH(2)PPh(2))(3); OTf = OSO(2)CF(3)] with P(4)S(3) and P(4)Se(3) yields pairs of coordination isomers, namely, [(triphos)Re(CO)(2)[eta(1)-P(apical)-P(4)X(3)]](+) (X = S, 2; Se, 5) and [(triphos)Re(CO)(2)[eta(1)-P(basal)-P(4)X(3)]](+) (X = S, 3; Se, 6). The latter represent the first examples of the eta(1)-P(basal) coordination achieved by the P(4)X(3) molecular cage. Further reaction of 2/3 and 5/6 mixtures with 1 affords the dinuclear species [[(triphos)Re(CO)(2)](2)[mu,eta(1:1)-P(apical,)P(basal)-P(4)X(3)]](2+) (X = S, 4; Se, 7) in which the unprecedented M-eta(1)-P(basal)/eta(1)-P(apical)-M' bridging coordination of the P(4)X(3) molecule is accomplished. A theoretical analysis of the bonding properties of the two coordination isomers is also presented. The directionality of apical vs basal phosphorus lone pairs is also discussed in terms of MO arguments.
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Structure and Bonding of Diiodine Adducts of the Sulfur-Rich Donors 1,3-Dithiacyclohexane-2-thione (ptc) and 4,5-Ethylenedithio-1,3-dithiole-2-thione (ttb).
The reactions of I(2) with ptc and ttb (title ligands) have been investigated in CHCl(3) solution at different temperatures by spectrophotometry. A least-squares method procedure provided evidence for the formation of the 1:1 adducts. Crystals of the latter have been analyzed by X-ray diffraction methods (both monoclinic, P2(1)/c; ptc.I(2), a = 8.691(6) Å, b = 9.010(6) Å, c = 13.237(5) Å, beta = 103.43(2) degrees, Z = 4, R = 0.0305; ttb.I(2), a = 12.090(6) Å, b = 6.433(5) Å, c = 15.731(6) Å, beta = 99.30(2) degrees, Z = 4, R = 0.0419). Both structures show that the thionic sulfur (in any case a CS(3) group inserted in a ring) is bound almost collinearly with the diiodine molecule. The d(S-I) separations are 2.755(2) and 2.805(3) Å in the ptc.I(2) and ttb.I(2) adducts, respectively, while d(I-I) is practically the same (2.812(2) Å). An evident stereochemical difference is that the S-I-I moiety is nearly coplanar with the CS(3) group in ptc.I(2) while it is upright in ttb.I(2). However, the feature is not expected to cause a major electronic difference. In order to reproduce the structural features, different ab initio approaches have been attempted, with the best results being obtained with the density functional method (DFT). Despite the S-I distances which are slightly longer than the experimental ones (by ca. 0.25 Å), the distribution of filled and empty frontier molecular orbitals (MOs) allows a good interpretation of the visible spectra. Also a rationalization of the sigma electronic density distributed over the three centers S-I-I has been attempted by qualitative MO theory (EHMO method). Provided the good agreement with the higher level calculations, the perturbation theory arguments highlight the variable sp hybridization at the central iodine atom as the electronic factor of importance. The strength of the donor (D) affects significantly the redistribution of six electrons over four atomic orbitals, and the classic model is revised as a four-orbital/six-electron one. Thus, it is pointed out that a major four-electron repulsion is exerted over the D-I or the I-I linkages with major consequences for their respective lengths.
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Theoretical Overview of Pd(I) and Pt(I) Dimers with Bridging Phosphido Ligand(s).
A review of all of the known structural stereotypes of dimeric Pt(I) or Pd(I) systems with at least one bridging phosphido group is presented. The nature of the direct metal-metal interaction is affected by the number, nature, and disposition of the various coligands. It appears that in some cases a bent M-M bond is by itself a center of nucleophilicity. On the other hand, it is experimentally known that the bridging phosphido ligand is a competing nucleophile, giving rise to an agostic interaction in Pd(2), but not in Pt(2), derivatives. MO theory is used to outline the major electronic features and correlation between different prototypes. Besides a qualitative approach based on the EHMO method, DFT and MP2 methods were used to reproduce the experimental structures and to explore the possibility of unknown tautomers.
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1,2-Diamidolenes, -Diphosphidolenes, and -Dithiolenes as Riders on Sawhorses (L(6)M(2) Units). A Theoretical Interpretation of the Stereochemistries, Residual Bonding Capabilities, and Contrasts to the Behavior of 1,2-Dioxolenes.
This paper analyzes from the theoretical viewpoint (ehmo calculations with the graphic interface of CACAO) the bonding capabilities of conjugated pi-ligands containing the unit XCCX (X = S, NR, PR) when they ride on binuclear fragments of the type L(6)M(2) (sawhorse). The stereochemistries are monitored for a number of structures retrieved from the Cambridge Database. In the starting prototype, e.g. the complex [(CO)(2)(PPh(3))Ru{&mgr;-1,2-(NH)(2)C(6)H(4)}Ru(PPh(3))(CO)(2)] with 34 valence electrons, the rider donates 4 electron pairs to two d(7) metals and a single M-M bond is featured. In spite of the predicted electron similarities between diamidolenes and dioxolenes, no case has been reported of a catecholate ligand adapting to the same riding mode and therefore being able to donate a total of 4 lone pairs to the metals. The different behavior is largely ascribed to poor interactions of b(1) symmetry when the donor atoms of the rider are of higher electronegativity. Stronger donors, such as phosphorus and sulfur, still support the riding mode but elongate understandably the M-M bond. In presence of d(6) metal atoms, the riding ligand bends over one of the metals and also donates the electrons of the C=C pi-bond itself. Alternatively, an extra ligand (terminal or bridging) can be added to the primary framework M(2)L(6). In all of the latter cases, the various factors affecting the nature of the M-M bond are theoretically interpreted.
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