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Andreas Dreuw

Publications and source records attributed to Andreas Dreuw.

12 recordsLinked to original sources
PubMed2006

Carotenoid radical cation formation in LH2 of purple bacteria: a quantum chemical study.

In LH2 complexes of Rhodobacter sphaeroides the formation of a carotenoid radical cation has recently been observed upon photoexcitation of the carotenoid S2 state. To shed more light onto the yet unknown molecular mechanism leading to carotenoid radical formation in LH2, the interactions between carotenoid and bacteriochlorophyll in LH2 are investigated by means of quantum chemical calculations for three different carotenoids--neurosporene, spheroidene, and spheroidenone--using time-dependent density functional theory. Crossings of the calculated potential energy curve of the electron transfer state with the bacteriochlorophyll Qx state and the carotenoid S1 and S2 states occur along an intermolecular distance coordinate for neurosporene and spheroidene, but for spheroidenone no crossing of the electron transfer state with the carotenoid S1 state could be found. By comparison with recent experiments where no formation of a spheroidenone radical cation has been observed, a molecular mechanism for carotenoid radical cation formation is proposed in which it is formed via a vibrationally excited carotenoid S1 or S*state. Arguments are given why the formation of the carotenoid radical cation does not proceed via the Qx, S2, or higher excited electron transfer states.

Algorithms↗
PubMed2006

Quantum chemical methods for the investigation of photoinitiated processes in biological systems: theory and applications.

With the advent of modern computers and advances in the development of efficient quantum chemical computer codes, the meaningful computation of large molecular systems at a quantum mechanical level became feasible. Recent experimental effort to understand photoinitiated processes in biological systems, for instance photosynthesis or vision, at a molecular level also triggered theoretical investigations in this field. In this Minireview, standard quantum chemical methods are presented that are applicable and recently used for the calculation of excited states of photoinitiated processes in biological molecular systems. These methods comprise configuration interaction singles, the complete active space self-consistent field method, and time-dependent density functional theory and its variants. Semiempirical approaches are also covered. Their basic theoretical concepts and mathematical equations are briefly outlined, and their properties and limitations are discussed. Recent successful applications of the methods to photoinitiated processes in biological systems are described and theoretical tools for the analysis of excited states are presented.

Biophysics↗
PubMed2006

Advances in methods and algorithms in a modern quantum chemistry program package.

Advances in theory and algorithms for electronic structure calculations must be incorporated into program packages to enable them to become routinely used by the broader chemical community. This work reviews advances made over the past five years or so that constitute the major improvements contained in a new release of the Q-Chem quantum chemistry package, together with illustrative timings and applications. Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.

Algorithms↗
PubMed2006

Influence of geometry relaxation on the energies of the S1 and S2 states of violaxanthin, zeaxanthin, and lutein.

Precise knowledge of the excitation energies of the lowest excited states S(1) and S(2) of the carotenoids violaxanthin, lutein, and zeaxanthin is a prerequisite for a fundamental understanding of their role in light harvesting and photoprotection during photosynthesis. By means of density functional theory (DFT) and time-dependent DFT (TDDFT), the electronic and structural properties of the ground and first and second excited states are studied in detail. According to our calculations, all-s-cis-zeaxanthin and s-cis-lutein conformers possess lower total ground-state energies than the corresponding s-trans conformers. Thus, only s-cis isomers are probably physiologically relevant. Furthermore, the influence of geometric relaxation on the energies of the ground state and S(1) and S(2) states has been studied in detail. It is demonstrated that the energies of these states change significantly if the carotenoid adopts the equilibrium geometry of the S(1) state. Considering these energetic effects in the interpretation of S(1) excitation energies obtained from fluorescence and transient absorption spectroscopy shifts the S(1) excitation energies about 0.2 eV to higher energy above the excitation energy of the chlorophyll a.

Journal Article↗
PubMed2006

Solid state fluorescence of Pigment Yellow 101 and derivatives: a conserved property of the individual molecules.

The optical properties of the bisazomethine pigments Pigment Yellow 101 (P.Y.101) and three derivatives are investigated employing density functional theory (DFT) and time-dependent DFT (TDDFT). P.Y.101 and one of its derivatives exhibit unusual solid state fluorescence, although both possess OH groups and the latter pigment has particularly small intermolecular distances in its crystal, which are both properties that contradict common empirical rules for fluorescent pigments. Here it is shown that the OH groups are indeed essential for molecular fluorescence of the pigments due to the necessary formation of an intramolecular hydrogen bond with the lone pairs of the bisazomethine nitrogens. Furthermore, the quenching mechanism of molecular fluorescence in the non-fluorescent derivatives is analyzed in detail and a CNN bending motion of the central bisazomethine substructure is identified to be the relevant reaction coordinate along which efficient fluorescence quenching occurs in the individual molecule as well as in the crystal. Electron transfer quenching, which usually is expected to be an important quenching mechanism in aggregated media (here the crystals), is ruled out for the studied bisazomethine pigments. The solid state fluorescence properties of the pigments can finally be understood as conserved molecular properties of the individual pigment molecules.

Journal Article↗
PubMed2004

Failure of time-dependent density functional theory for long-range charge-transfer excited states: the zincbacteriochlorin-bacteriochlorin and bacteriochlorophyll-spheroidene complexes.

It is well-known that time-dependent density functional theory (TDDFT) yields substantial errors for the excitation energies of charge-transfer (CT) excited states, when approximate standard exchange-correlation (xc) functionals are used, for example, SVWN, BLYP, or B3LYP. Also, the correct 1/R asymptotic behavior of CT states with respect to a distance coordinate R between the separated charges of the CT state is not reproduced by TDDFT employing these xc-functionals. Here, we demonstrate by analysis of the TDDFT equations that the first failure is due to the self-interaction error in the orbital energies from the ground-state DFT calculation, while the latter is a similar self-interaction error in TDDFT arising through the electron transfer in the CT state. Possible correction schemes, such as inclusion of exact Hartree-Fock or exact Kohn-Sham exchange, as well as aspects of the exact xc-functional are discussed in this context. Furthermore, a practical approach is proposed which combines the benefits of TDDFT and configuration interaction singles (CIS) and which does not suffer from electron-transfer self-interaction. The latter approach is applied to a (1,4)-phenylene-linked zincbacteriochlorin-bacteriochlorin complex and to a bacteriochlorophyll-spheroidene complex, in which CT states may play important roles in energy and electron-transfer processes. The errors of TDDFT alone for the CT states are demonstrated, and reasonable estimates for the true excitation energies of these states are given.

Bacteriochlorophylls↗
PubMed2002

Characterization of the relevant excited states in the photodissociation of CO-ligated hemoglobin and myoglobin.

The relevant excited states in the rapid photodissociation process of hemoglobin and myoglobin are examined by means of time-dependent density functional theory. Our calculations clearly show that the photodissociation is mediated by two repulsive states (5 A' ' and 3 A') which cross the lowest excited states (1 A' and 1 A' ') at an internuclear Fe-C distance of about 2 A. Electron detachment/attachment density plots nicely explain the repulsive nature of the 5 A' ' and 3 A' states.

Carbon Monoxide↗
PubMed2002

Dianionic tetraborates do exist as stable entities.

To date, B(6)H(6)(2-) and some of its derivatives are the smallest members of the closo-borates that have been synthesized and analyzed in condensed phases. In contrast, no stable dianionic tetraborate has yet been observed, either in solution or solids or in the gas phase. In this work, the gas-phase stability of dianionic tetraborates B(4)X(4)(2-) (X = H, CN, NC, or BO) is investigated with ab initio methods. For this objective, the geometries of the dianions are optimized, the electronic stability is tested, and various fragmentation channels are studied. In agreement with previous examinations, tetrahedral isomers of all examined tetraborates have been found to represent geometrically stable isomers and to exhibit a triplet electronic ground state. However, these isomers are electronically unstable, i.e., their additional electrons are not bound. Furthermore, new D(2)(d)()-symmetric isomers of B(4)X(4)(2-) (X = H, CN, NC, or BO) have been identified that have a closed-shell singlet ground state and are lower in energy than their tetrahedral counterparts. Moreover, B(4)(CN)(4)(2-) and B(4)(BO)(4)(2-) represent stable gas-phase dianions and are predicted to be observable in suitable experiments. The electronic properties and geometries of these dianions are discussed in detail and explained in terms of the electrostatic repulsion of the excess electrons and the aromaticity of the dianions.

Journal Article↗
PubMed2002

Cyclic carbon cluster dianions and their aromaticity.

Cyclic carbon cluster dianions (CC(2))(2-)(n)(n = 3-6) are investigated by ab initio methods with regard to their geometric properties, electronic stability, and aromaticity. The unique wheel-like structures of these dianions consist of a n-membered carbon ring, where a C(2) unit is attached to each carbon atom. All investigated dianions represent stable gas-phase dianions. While the smallest member of this family (CC(2))(2-)(3) is clearly aromatic, the aromatic character decreases rapidly with increasing ring size. The geometries and the aromaticity of the cyclic clusters (CC(2))(2-)(n)(n = 3-6) can be nicely explained using resonance structure arguments.

Journal Article↗