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Andrew Hemmings

Publications and source records attributed to Andrew Hemmings.

4 recordsLinked to original sources

A different function for a member of an ancient and highly conserved cytochrome P450 family: from essential sterols to plant defense.

CYP51 sterol demethylases are the only cytochrome P450 enzymes with a conserved function across the animal, fungal, and plant kingdoms (in the synthesis of essential sterols). These highly conserved enzymes, which are important targets for cholesterol-lowering drugs, antifungal agents, and herbicides, are regarded as the most ancient member cytochrome P450 family. Here we present a report of a CYP51 enzyme that has acquired a different function. We show that the plant enzyme AsCYP51H10 is dispensable for synthesis of essential sterols and has been recruited for the production of antimicrobial compounds (avenacins) that confer disease resistance in oats. The AsCyp51H10 gene is synonymous with Sad2, a gene that we previously had defined by mutation as being required for avenacin synthesis. In earlier work, we showed that Sad1, the gene encoding the first committed enzyme in the avenacin pathway (beta-amyrin synthase), had arisen by duplication and divergence of a cycloartenol synthase-like gene. Together these data indicate an intimate evolutionary connection between the sterol and avenacin pathways. Sad1 and Sad2 lie within 70 kb of each other and are expressed specifically in the epidermal cells of the root tip, the site of accumulation of avenacins. These findings raise intriguing questions about the recruitment, coevolution, and regulation of the components of this specialized defense-related metabolic pathway.

Amino Acid Sequence↗

MLEM deconvolution of protein X-ray diffraction images based on a multiple-PSF model.

In this paper we analyze the degradation of protein X-ray diffraction images by diffuse light distortion (DLD). In order to correct the degradation, a new multiple point spread function (PSF) model is introduced and used to restore X-ray diffraction image data (XRD). Raw PSFs are collected from isolated spots in high-resolution areas on the diffraction patterns which represent the orientation of DLDs. An adaptive ridge regression (ARR) technique is used to remove noise from the raw PSF data. A target Gaussian function is used to model the raw PSFs. A maximum likelihood expectation maximization (MLEM) algorithm combined with a multi-PSF model is employed to restore high intensity, asymmetrical protein X-ray diffraction data. Experimental results using a single and multiple PSFs are presented and discussed. We show that using a multiple PSF model in the deconvolution algorithm improved the quality of the XRD and as a result the spot integration error (chi-squared) and corresponding electron density mapare improved.

Algorithms↗

Analysis of ligation and DNA binding by Escherichia coli DNA ligase (LigA).

NAD(+)-dependent DNA ligases are essential enzymes in bacteria, with the most widely studied of this class of enzymes being LigA from Escherichia coli. NAD(+)-dependent DNA ligases comprise several discrete structural domains, including a BRCT domain at the C-terminus that is highly-conserved in this group of proteins. The over-expression and purification of various fragments of E. coli LigA allowed the investigation of the different domains in DNA-binding and ligation by this enzyme. Compared to the full-length protein, the deletion of the BRCT domain from LigA reduced in vitro ligation activity by 3-fold and also reduced DNA binding. Using an E. coli strain harbouring a temperature-sensitive mutation of ligA, the over-expression of protein with its BRCT domain deleted enabled growth at the non-permissive temperature. In gel-mobility shift experiments, the isolated BRCT domain bound DNA in a stable manner and to a wider range of DNA molecules compared to full LigA. Thus, the BRCT domain of E. coli LigA can bind DNA, but it is not essential for DNA nick-joining activity in vitro or in vivo.

Base Sequence↗

Characterization of a temperature-sensitive DNA ligase from Escherichia coli.

DNA ligases are essential enzymes in cells due to their ability to join DNA strand breaks formed during DNA replication. Several temperature-sensitive mutant strains of Escherichia coli, including strain GR501, have been described which can be complemented by functional DNA ligases. Here, it is shown that the ligA251 mutation in E. coli GR501 strain is a cytosine to thymine transition at base 43, which results in a substitution of leucine by phenylalanine at residue 15. The protein product of this gene (LigA251) is accumulated to a similar level at permissive and non-permissive temperatures. Compared to wild-type LigA, at 20 degrees C purified LigA251 has 20-fold lower ligation activity in vitro, and its activity is reduced further at 42 degrees C, resulting in 60-fold lower ligation activity than wild-type LigA. It is proposed that the mutation in LigA251 affects the structure of the N-terminal region of LigA. The resulting decrease in DNA ligase activity at the non-permissive temperature is likely to occur as the result of a conformational change that reduces the rate of adenylation of the ligase.

Amino Acid Sequence↗