Biomedical subjects

Andrew J Orr-Ewing

Publications and source records attributed to Andrew J Orr-Ewing.

12 recordsLinked to original sources

PubMed2006

Absorption cross sections of formaldehyde at wavelengths from 300 to 340 nm at 294 and 245 K.

Absorption cross sections for the A1A2-X1A1 electronic transition of formaldehyde have been measured by ultraviolet (UV) laser absorption spectroscopy in the tropospherically significant wavelength range 300-340 nm, over which HCHO is photochemically active. Absorption cross sections are reported at two temperatures, 294 and 245 K and at a spectral resolution of 0.0035 nm (0.35 cm-1). At this resolution, greater peak absorption cross sections are obtained for many of the sharp spectral features than were previously reported. To simulate atmospheric conditions in the troposphere, the effects of adding a pressure of nitrogen of up to 500 Torr and of reduced sample temperature were investigated. The overall magnitudes of peak absorption cross sections are largely unaffected by the added pressure of nitrogen, but a modest degree of pressure broadening (0.2-0.3 cm-1 atm-1) is evident in the line shapes. Computer simulations of spectra have been optimized by comparison with wavelength-dependent formaldehyde absorption cross sections for each major vibronic band in the chosen wavelength range. Experimental and computer simulated spectra at 294 and 245 K are compared to test the reliability of the computer simulations for quantification of the effects of temperature on absorption cross sections. All experimental absorption cross section data and tables of input parameters for spectral simulations are available as Supporting Information.

Atmosphere↗

PubMed2006

Measuring acetylene concentrations using a frequency chirped continuous wave diode laser operating in the near infrared.

Two frequency chirped continuous wave diode lasers operating in the near infrared (IR) at wavelengths of lambda approximately 1.535 microm and lambda approximately 1.520 microm have been used to measure acetylene concentrations using the P(17) and R(9) rotational lines of the (nu1 + nu3) vibrational combination band. The diode lasers were frequency chirped by applying an electrical current pulse to the laser driver at a repetition rate of greater than 1 kHz. As the laser is operated at high repetition rates, more than 1000 spectra per second can, in principle, be acquired and summed, allowing fast accumulation of data, rapid averaging and consequent improvement of the signal to noise ratio and detection limit. Experiments were performed using a single-pass cell with a path length of 16.4 cm, and also an astigmatic multi-pass absorption cell aligned to give a path length of 56 m. Detection limits corresponding to minimum detectable absorption coefficients, alpha(min), of 5.6 x 10(-5) and 7.8 x 10(-8) cm(-1), respectively, were obtained over a 4 s detection bandwidth. These detection limits would correspond to mixing ratios of 21 parts per million by volume (ppmv) and 59 parts per billion by volume (ppbv) of acetylene at 1 atm in air, with the deleterious effects of pressure broadening accounted for. The single-pass cell was used to perform breakthrough volume (BTV) experiments for the low volume adsorbent traps used to pre-concentrate organic compounds in air, taking advantage of the capability of the system to measure concentrations in real time.

Journal Article↗

PubMed2006

Velocity map imaging study of BrCl photodissociation at 467 nm: determination of all odd-rank (K = 1 and 3) anisotropy parameters for the Cl(2P(3/2)0) photofragments.

Resonance-enhanced multiphoton ionization and velocity map imaging of the Cl(2P(3/2)0) fragments of BrCl photolysis at 467.16 nm have been used to obtain a complete set of orientation parameters (with ranks K = 1 and 3) describing the polarization of the electronic angular momentum. The experiments employ two geometries distinguished only by the circular or linear polarization of the photolysis laser beam. Normalized difference images constructed from the data accumulated using a right or left circularly polarized probe-laser beam, counterpropagating with the photolysis laser, were fitted to basis images corresponding to contributions from various odd-rank anisotropy parameters. Expressions are given for the difference images in terms of the K = 1 and 3 anisotropy parameters, which describe coherent and incoherent parallel and perpendicular excitation and dissociation mechanisms. The nonzero values of the anisotropy parameters are indicative of nonadiabatic dissociation dynamics, with likely contributions from flux on the A 3Pi1,B 3Pi(0+),C 1Pi1, and X 1sigma+(0+) states as well as one further omega = 1 state, all of which correlate adiabatically to Cl(2P(3/2)0) + Br(2P(3/2)0) photofragments. The magnitudes of the parameters depend both on the amplitudes of dissociative flux in these states, and also on the phases accumulated by the nuclear wave functions for different dissociation pathways.

Journal Article↗

PubMed2005

Stereodynamics of chlorine atom reactions with organic molecules.

A series of recent experimental and computational studies has explored how the dynamics of hydrogen abstraction from organic molecules are affected by the presence of functional groups in the molecule and by basic structural motifs such as strained ring systems. Comparisons drawn between reactions of Cl atoms with alkanes such as ethane, Cl + CH3CH3--> HCl + CH3CH2, which serve as benchmark systems, and with functionalized molecules such as alcohols, amines, and alkyl halides, Cl + CH3X --> HCl + CH2X (X = OH, NH2, halogen, etc.) expose a wealth of mechanistic detail. Although the scattering dynamics, as revealed from measured angular distributions of the velocities of the HCl with quantum-state resolution, show many similarities, much-enhanced rotational excitation of the HCl products is observed from reactions of the functionalized molecules. The degree of rotational excitation of the HCl correlates with the dipole moment of the CH2X radical and is thus attributed, at least in part, to post-transition-state dipole-dipole interactions between the separating, polar reaction products. This interpretation is supported by direct dynamics trajectories computed on-the-fly, and the HCl rotation is thus argued to serve as an in situ probe of the angular anisotropy of the reaction potential energy surface in the post-transition-state region. Comparisons between the dynamics of reactions of dimethyl ether and the three- and four-membered-ring compounds oxirane (c-C2H4O) and oxetane (c-C3H6O) raise questions about the role of reorientation of the reaction products on a time scale commensurate with their separation. The shapes and structures of polyatomic molecules are thus demonstrated to have important consequences for the stereodynamics of these direct abstraction reactions.

Journal Article↗

PubMed2005

Imaging the dynamics of gas phase reactions.

Ion imaging methods are making ever greater impact on studies of gas phase molecular reaction dynamics. This article traces the evolution of the technique, highlights some of the more important breakthroughs with regards to improving image resolution and in image processing and analysis methods, and then proceeds to illustrate some of the many applications to which the technique is now being applied--most notably in studies of molecular photodissociation and of bimolecular reaction dynamics.

Gases↗

PubMed2005

Continuous wave cavity ring-down spectroscopy measurement of NO2 mixing ratios in ambient air.

The performance of a continuous wave diode laser based cavity ring-down (CRD) spectrometer is demonstrated for retrieval of NO2 mixing ratios in ambient air. Measurements are made at wavelengths around 410 nm, a region free from other spectroscopic interferences, and the instrument is shown to be capable of quantitative and precise NO2 mixing ratio determinations without any requirement for calibration. The minimum concentration of NO2 that can be measured by the spectrometer is estimated to be 0.1 ppbv (parts per billion by volume) in 50 s at atmospheric pressure. Using dynamic dilution of a standard NO2 sample, the performance of the spectrometer has been validated for NO2 measurements over the range of 0.2 to 80 ppbv. NO2 measurements performed directly on laboratory air are compared with data obtained with a calibrated chemiluminescence instrument and shown to be in excellent agreement.

Air Pollutants↗

PubMed2005

Nonadiabatic dynamics in the CH3+HCl-->CH4+Cl(2PJ) reaction.

Nonadiabatic dynamics in the title reaction have been investigated by 2+1 REMPI detection of the Cl(2P(3/2)) and Cl*(2P(1/2)) products. Reaction was initiated by photodissociation of CH(3)I at 266 nm within a single expansion of a dilute mixture of CH(3)I and HCl in argon, giving a mean collision energy of 7800 cm(-1) in the center-of-mass frame. Significant production of Cl* was observed, with careful checks made to ensure that no additional photochemical or inelastic scattering sources of Cl* perturbed the measurements. The fraction of the total yield of Cl(2P(J)) atoms formed in the J=1/2 level at this collision energy was 0.150+/-0.024, and must arise from nonadiabatic dynamics because the ground potential energy surface correlates to CH(4)+Cl(2P(3/2)) products.

Journal Article↗

PubMed2005

Photochemistry of formaldehyde under tropospheric conditions.

We report new results on the absorption cross sections and photochemical quantum yields for radical (H + HCO) production from formaldehyde in the wavelength interval from 308-320 nm, obtained at resolutions of better than 0.1 nm. The absorption cross sections, measured at resolutions close to the limit for Doppler broadening of HCHO, show rotationally resolved fine structure, with maximum values higher than those obtained in previous, lower resolution, studies. In this wavelength region, absorption cross sections peak at 2.3 x 10(-19) cm2 molecule(-1), but band-integrated values are in excellent accord with previous measurements. HCO absorption coefficients, measured by cavity ring-down spectroscopy following UV photolysis of HCHO at wavelengths across the 2(0)(1)5(0)(1), 2(0)(2)4(0)(3) and 2(0)(3)4(0)(1) bands of the A1A2-X1A1 transition, generally mimic the parent absorption band profiles. Division of these absorption coefficients by the high resolution parent absorption cross sections gives relative quantum yields for the H + HCO radical product channel that can be put on an absolute scale using single-wavelength literature values. These quantum yields are observed to show some variation with parent excitation wavelength (and thus with excited vibronic level). Addition of 200 Torr of N2 increases the HCO quantum yields.

Journal Article↗

PubMed2004

Combining preconcentration of air samples with cavity ring-down spectroscopy for detection of trace volatile organic compounds in the atmosphere.

Quantitative detection of small volatile organic compounds in ambient air is demonstrated using a combination of continuous wave cavity ring-down spectroscopy (cw-CRDS) and the preconcentration of air samples with an adsorbent trap. The trap consists of a zeolite molecular sieve, selected for efficient trapping of the test compounds ethene (ethylene) and ethyne (acetylene). Upon heating of the trap, these organic compounds desorb into a small-volume ring-down cavity, and absolute concentrations are measured by CRDS at 6150.30 cm(-1) (ethene) and 6512.99 cm(-1) (ethyne) without the need for calibration. The efficiency of the trapping and desorption was tested using commercial standard gas mixtures and shown to be 100% in the case of ethene, whereas some ethyne is retained under the current operating conditions. Samples of indoor and outdoor air were analyzed for ethene content, and measurements were made of mixing ratios as low as 6 ppbv. Removal of water vapor and CO(2) from the air samples prior to trapping was unnecessary, and the selectivity of the trapping, desorption, and spectroscopic detection steps eliminates the need for gas chromatographic separation prior to analysis. With anticipated improvements to the design, measurements of these and other trace atmospheric constituents should be possible on time scales of a few minutes.

Journal Article↗

PubMed2004

UV causes dramatic changes in aggregation with mixtures of photoactive and inert surfactants.

Aqueous mixtures of photosensitive and inert surfactants have been prepared; photoreactions and changes in aggregation after irradiation have been characterized. The photosensitive component was a stilbene-containing gemini photosurfactant (E-SGP), and the inert surfactants were either DTAB (dodecyltrimethylammonium bromide) or one of two different gemini surfactants, 12-4-12 or 16-4-16 (butanediyl-1,4-bis(dodecyldimethylammonium bromide) or butanediyl-1,4-bis(hexadecyldimethylammonium bromide)). Small-angle neutron scattering (SANS) studies revealed that in general the initial nonirradiated mixed systems form vesicle-type aggregates (100-200 angstroms radius), in equilibrium with some smaller charged spheroidal or ellipsoidal micelles (approximately 20 angstroms radius). In all cases, UV irradiation resulted in disruption of these vesicles and the formation of charged micelles. 1H NMR showed that the main photoproduct is the cis, anti, cis dimer of E-SGP (ZEZ-DiSGP); hence, photochemically induced changes in the reactive SGP drive significant changes in the preferred aggregation structure. These results demonstrate the utility of photoactive surfactants in mixtures with inert analogues.

Journal Article↗

PubMed2004

Imaging the quantum-state specific differential cross sections of HCl formed from reactions of chlorine atoms with methanol and dimethyl ether.

Center-of-mass frame scattering angle distributions obtained directly from crossed molecular beam velocity map images are reported for HCl formed in different rotational levels of its vibrational ground state by reaction of Cl atoms with CH3OH and CH3OCH3. Products are observed to scatter over all angles, with peaks in the distribution in the forward and backward directions (theta = 0 and 180 degrees with respect to the relative velocity vectors of the Cl atoms). Products of both reactions exhibit differential cross sections that vary with the rotational quantum number of the HCl, with a greater propensity for forward scatter for J = 2, shifting to more pronounced backward scatter for J = 5. This trend is, however, more evident for reaction of dimethyl ether than for methanol. The mean fractions of the available energy channeled into product kinetic energy vary with scattering angle, but the angle-averaged fractions are, respectively, 0.37 and 0.42 for the methanol and dimethyl ether reactions. On average, 46% or more of the available energy of the reactions becomes internal energy of the radical co-product. Results are interpreted with the aid of computed energies of transition states and molecular complexes along the reaction pathways, and comparisons are drawn with recent measurements of the scattering distributions and energy release for reactions of Cl atoms with small alkanes.

Journal Article↗

PubMed2004

On-the-fly ab initio trajectory calculations of the dynamics of Cl atom reactions with methane, ethane and methanol.

The dynamics of Cl atom reactions with methane, ethane, and methanol have been studied by calculation of quasi-classical trajectories, with computation of potential energies and gradients only at the geometries through which the trajectories pass. Trajectories were started from the transition state, with 2 kcal mol(-1) of energy given to the mode with an imaginary frequency (representing the reaction coordinate at the transition state) and inclusion of zero-point energy in some or all of the remaining vibrational modes. The trajectories were propagated as far as separated products, with the majority of potential energy calculations performed at the HF/6-31G level of theory. The rotational quantum state population distributions of the HCl products from the reactions of Cl atoms with methane, ethane and methanol peaked at J'=1, 2, and 6, respectively. The calculations thereby exhibit somewhat greater rotational excitation than is found experimentally, but correctly describe the trend of increasing HCl product rotation for the three respective reactions. In agreement with previous observations, only 4% of the energy available to the products of the reaction of Cl atoms with methane was channeled into CH3 radical internal energy, and 1% into HCl rotation, with 92% ending up as translational energy. For the reaction of Cl atoms with ethane and with methanol, the corresponding values for radical internal energy, HCl rotation and product translation are 21, 3, and 78%, and 46, 13, and 42%, respectively. For the latter two reactions, the radical internal energy is mostly accounted for by rotational motion. The clear increase in rotational excitation of the HCl products from the Cl atom reaction with methanol is explained in terms of a dipole-dipole interaction between the departing polar fragments. A smaller set of more computationally expensive trajectory calculations using potentials and gradients from the MP2/6-311G(d,p) level of theory were performed for reactions of Cl atoms with methanol, and give results in better agreement with experimentally measured HCl rotational excitation, consistent with the model of dipole-induced product rotation because the MP2/6-311G(d,p) calculations give smaller dipole moments for both products than the HF/6-31G calculations. The calculated angles between the rotational angular momentum vectors and recoil velocities of the radical peak sharply at 90 degrees for the reactions of Cl atoms with ethane and methanol, but exhibit a much broader distribution for reaction with methane.

Journal Article↗