Biomedical subjects
Publications and source records attributed to Andrew M Teale.
The structures of 3-fluoroazetidinium hydrochloride and 3-fluoro-1,5-diazacyclooctane hydrobromide are explored both by X-ray diffraction analysis and DFT calculations, and the conformations of these molecules are shown to be significantly influenced by the through space C-F...N+ interaction.
Differences between exchange methods in exchange-only Kohn-Sham theory are highlighted by calculations of diatomic molecule total energies, uncoupled isotropic NMR shieldings, and HOMO-LUMO eigenvalue differences. Optimised effective potential (OEP) and Wu-Yang (WY) results are very similar. Localised Hartree-Fock (LHF) and Krieger-Li-Iafrate (KLI) results are close to one another, but are different to OEP and WY. Becke 1988 exchange (B88X) is different again. Shieldings reduce from OEP/WY to LHF/KLI to B88X, which is consistent with an observed reduction in HOMO-LUMO gaps. LHF, KLI, and B88X shieldings and HOMO-LUMO gaps are closer to near-exact, correlated values, than are the OEP values. These variations arise entirely due to differences in the one-electron exchange potentials, which is clearly evident in potential difference plots, relative to OEP, for the N2 molecule. Density difference plots are also presented, which exhibit a spatial correlation with the potential differences. HOMO and LUMO probability density difference plots show a contraction of the LUMO relative to OEP, which is consistent with the NMR and HOMO-LUMO findings. Plots are also presented for near-exact, correlated Kohn-Sham calculations. The features are qualitatively similar to those observed in the LHF, KLI, and B88X plots, highlighting correlated character in these approximate exchange-only calculations.
Ground- and excited-state diatomic bond lengths, vibrational levels, and potential-energy curves are determined using conventional and localized Hartree-Fock (LHF)-based density-functional theory. Exchange only and hybrid functionals (with various fractions of exchange) are considered, together with a standard generalized gradient approximation (GGA). Ground-state bond lengths and vibrational wave numbers are relatively insensitive to whether orbital exchange is treated using the conventional or LHF approach. Excited-state calculations are much more sensitive. For a standard fraction of orbital exchange, N2 and CO vertical excitation energies at experimental bond lengths are accurately described by both conventional and LHF-based approaches, providing an asymptotic correction is present. Excited-state bond lengths and vibrational levels are more accurate with the conventional approach. The best quality, however, is obtained with an asymptotically corrected GGA functional. For the ground and lowest four singlet excited states, the GGA mean absolute errors in bond lengths are 0.006 A (0.5%) and 0.011 A (0.8%) for N2 and CO, respectively. Mean absolute errors in fundamental vibrational wavenumbers are 49 cm(-1) (2.7%) and 68 cm(-1) (5.0%), respectively. The GGA potential-energy curves are compared with near-exact Rydberg-Klein-Rees curves. Agreement is very good for the ground and first excited state, but deteriorates for the higher states.