Biomedical subjects

Andrew S Lipton

Publications and source records attributed to Andrew S Lipton.

7 recordsLinked to original sources

PubMed2005

Separation of 47Ti and 49Ti solid-state NMR lineshapes by static QCPMG experiments at multiple fields.

Experimental procedures are proposed and demonstrated that separate the spectroscopic contribution from both (47)Ti and (49)Ti in solid-state nuclear magnetic resonance spectra. These take advantage of the different nuclear spin quantum numbers of these isotopes that lead to different "effective" radiofrequency fields for the central transition nutation frequencies when these nuclei occur in sites with a significant electric field gradient. Numerical simulations and solid-state NMR experiments were performed on the TiO(2) polymorphs anatase and rutile. For anatase, the separation of the two isotopes at high field (21.1T) facilitated accurate determination of the electric field gradient (EFG) and chemical shift anisotropy (CSA) tensors. This was accomplished by taking advantage of the quadrupolar interaction between the EFG at the titanium site and the different magnitudes of the nuclear quadrupole moments (Q) of the two isotopes. Rutile, having a larger quadrupolar coupling constant (C(Q)), was examined by (49)Ti-selective experiments at different magnetic fields to obtain spectra with different scalings of the two anisotropic tensors. A small chemical shielding anisotropy (CSA) of -30 ppm was determined.

Journal Article↗

PubMed2005

High-field QCPMG NMR of strontium nuclei in natural minerals.

The only stable NMR-active isotope of strontium, (87)Sr, is a spin-9/2 quadrupolar nucleus that has a low gyromagnetic ratio, a low natural abundance, and a large nuclear electric quadrupole moment. In this work, we utilize the quadrupolar Carr-Purcell-Meiboom-Gill (QCPMG) pulse sequence and a 21.14 T NMR spectrometer at the Pacific Northwest National Laboratory to characterize the strontium sites in the natural minerals strontianite (SrCO(3)) and celestine (SrSO(4)). QCPMG at 21.14 T was found to provide sensitivity enhancements of roughly two orders of magnitude over Hahn-echo experiments at an 11.74 T magnetic field. We extracted the quadrupolar parameters for the strontium nuclei through iterative simulations of the experimental spectra with the SIMPSON program by Bak, Rasmussen, and Nielsen. The data show that the quadrupolar parameters of (87)Sr appear to be highly sensitive to the symmetry of the strontium coordination environment and can thus provide information about the strontium binding environment in complex systems.

Carbonates↗

PubMed2004

Zinc solid-state NMR spectroscopy of human carbonic anhydrase: implications for the enzymatic mechanism.

The pH dependence of the (67)Zn solid-state nuclear magnetic resonance spectroscopy of human carbonic anhydrase (CAII) has been investigated to characterize the nature of the fourth ligand. CAII, through the Zn(2+)-bound hydroxide, catalyzes the deceptively simple reaction: CO(2) + H(2)O <==> HCO(3)(-) + H(+). The accepted mechanism for CAII would predict that water would be bound to the Zn(2+) at pH 5 and hydroxide would be bound at pH 8.5. The measured values for the electric field gradient (EFG) or quadrupole coupling constant (Cq) for CAII are independent of pH within the limits of the experimental error, i.e., 9.8 +/- 0.2 MHz. The EFG interaction has been predicted by ab initio electronic structure calculations for water and hydroxide bound to the zinc, including various levels of hydrogen bonding. After comparing the predicted Cq's with the experimental values, we conclude that the species present from pH 5-8.5 is the hydroxide form. The NMR data presented here is not consistent with the accepted mechanism for CAII. We show that the NMR data is consistent with an alternative mechanism of CAII.

Carbonic Anhydrases↗

PubMed2004

Low temperature solid-state NMR experiments of half-integer quadrupolar nuclides: caveats and data analysis.

Solid-state NMR spectroscopy of half-integer quadrupolar nuclides has received a lot of interest recently with the advent of new methodologies and higher magnetic fields. We present here the extension of our previous low temperature method to an 18.8T system. This new probe entailed a total redesign including a cross coil and variable capacitors that are operational at cryogenic temperatures. The limitations to sensitivity are also discussed; including a new diode network, the utilization of a cryogenic band pass filter, and the consequences of the RF profiles of the coil. Further, details of the spectroscopy of quadrupolar nuclei in a protein are discussed, such as the observation of the outer transitions and how to distinguish them from the desired +/-1/2 transition.

Journal Article↗

PubMed2003

Solid-State 67Zn NMR spectroscopic studies and ab initio molecular orbital calculations on a synthetic analogue of carbonic anhydrase.

The tris(pyrazolyl)hydroborato zinc complexes [Tp(But,Me)]ZnX (where X = Br, Cl, and OH) have been examined by low-temperature solid-state (67)Zn NMR spectroscopy. The value of the quadrupole coupling constant, Cq, for the zinc increased monotonically with the electronegativity of the bound substituent X, e.g., Br < Cl << OH. Calculations on the methylimidazole complex [(MeImH)(3)Zn(OH)](+) as a model for the active site of carbonic anhydrase indicate that the computed electric field gradient tensor is in good agreement with the experimental and calculated values for [Tp(But,Me)]ZnOH.

Carbonic Anhydrases↗

PubMed2002

Solid-state (67)zn NMR spectroscopy in bioinorganic chemistry. Spectra of four- and six-coordinate zinc pyrazolylborate complexes obtained by management of proton relaxation rates with a paramagnetic dopant.

Solid-state (67)Zn NMR spectra of model compounds for metalloproteins, such as [H(2)B(3,5-Me(2)pz)(2)](2)Zn (pz denotes pyrazolyl ring), have been obtained using low temperatures (10 K) to enhance the Boltzmann factor in combination with cross polarization (CP) from (1)H to (67)Zn. Attempts to observe spectra of other model compounds, such as [H(2)B(pz)(2)](2)Zn, were hindered by long relaxation times of the protons. To decrease the proton relaxation times, the high-spin six-coordinate complex [HB(3,4,5-Me(3)pz)(3)](2)Fe has been investigated as a dopant. NMR and EPR measurements have shown that this Fe(II) dopant effectively reduces the (1)H spin lattice relaxation time, T(1), of the zinc samples in the temperature range 5-10 K with minimal perturbations of the (1)H spin lattice relaxation time in the rotating frame, T(1)(rho). Using this methodology, we have determined the (67)Zn NMR parameters of four- and six-coordinate zinc(II) poly(pyrazolyl)borate complexes that are useful models for systems of biological importance. The (67)Zn NMR parameters are contrasted to the corresponding changes in the (113)Cd NMR parameters for the analogous compounds. Further, these investigations have demonstrated that a temperature-dependent phase transition occurs in the neighborhood of 185 K for [HB(3,5-Me(2)pz)(3)](2)Zn; the other poly(pyrazolyl)borate complexes we investigated did not show this temperature-dependent behavior. This conclusion is confirmed by a combination of room-temperature high-field (18.8 T) solid-state (67)Zn NMR spectroscopy and low-temperature X-ray methods. The utilization of paramagnetic dopants should enable low-temperature cross polarization experiments to be performed on a wide variety of nuclides that are important in bioinorganic chemistry, for example, (25)Mg, (43)Ca, and (67)Zn.

Borates↗

PubMed2002

67Zn solid-state and single-crystal NMR spectroscopy and X-ray crystal structure of zinc formate dihydrate.

The crystal structure, quadrupole coupling parameters, and the orientation of the electric field gradient tensors for each site of zinc formate dihydrate have been determined. There are two distinct sites in the asymmetric unit: one containing four in-plane waters with two bridging formats, the other containing six bridging formates. The solid-state NMR lineshapes have been assigned to their respective sites by using isotopic labeling and cross-polarization methods. The hydrated site corresponds to the lineshape having a quadrupole coupling constant (Cq) of 9.6 MHz and the anhydrous site has a Cq of 6.2 MHz. The absence of chemical shielding contributions to the observed lineshapes has been verified with a high-field solid-state NMR experiment performed at 18.8 T.

Crystallography, X-Ray↗