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Andrzej L Sobolewski

Publications and source records attributed to Andrzej L Sobolewski.

16 recordsLinked to original sources
PubMed2006

Conical intersections in thymine.

The mechanisms which are responsible for the radiationless deactivation of the npi* and pipi* excited singlet states of thymine have been investigated with multireference ab initio methods (the complete-active-space self-consistent-field (CASSCF) method and second-order perturbation theory with respect to the CASSCF reference (CASPT2)) as well as with the CC2 (approximated singles and doubles coupled-cluster) method. The vertical excitation energies, the equilibrium geometries of the 1npi*and 1pipi* states, as well as their adiabatic excitation energies have been determined. Three conical intersections of the S1 and S0 energy surfaces have been located. The energy profiles of the excited states and the ground state have been calculated with the CASSCF method along straight-line reaction paths leading from the ground-state equilibrium geometry to the conical intersections. All three conical intersections are characterized by strongly out-of-plane distorted geometries. The lowest-energy conical intersection (CI1) arises from a crossing of the lowest 1pipi* state with the electronic ground state. It is found to be accessible in a barrierless manner from the minimum of the 1pipi* state, providing a direct and fast pathway for the quenching of the population of the lowest optically allowed excited states of thymine. This result explains the complete diffuseness of the absorption spectrum of thymine in supersonic jets. The lowest vibronic levels of the optically nearly dark 1npi* state are predicted to lie below CI1, explaining the experimental observation of a long-lived population of dark excited states in gas-phase thymine.

Computer Simulation↗
PubMed2006

Role of the intermolecular vibrations in the hydrogen transfer rate: the 3-methylindole-NH3 complex.

The lifetimes of the 3-methylindole-NH3 complex have been measured on different vibronic levels involving intermolecular modes and decrease from 530 to 65 ps, in a mode specific manner. Geometry optimizations of the ground and excited states have been performed with ab initio methods, and as in the case of phenol and indole, a repulsive pi sigma* state lies close to the initially excited pi pi* state. From these calculations, it seems that both in-plane and out-of-plane vibrations induce a faster nonradiative decay.

Hydrogen↗
PubMed2006

Role of electron-driven proton-transfer processes in the excited-state deactivation of the adenine-thymine base pair.

Exploratory electronic structure calculations have been performed with the CC2 (simplified singles and doubles coupled-cluster) method for two conformers of the adenine (A)-thymine (T) base pair, with emphasis on excited-state proton-transfer reactions. The Watson-Crick conformer and the most stable (in the gas-phase) conformer of the A-T base pair have been considered. The equilibrium geometries of the ground state and of the lowest excited electronic states have been determined with the MP2 (second-order Møller-Plesset) and CC2 methods, respectively. Vertical and adiabatic excitation energies, oscillator strengths, and dipole moments of the excited states are reported. Of particular relevance for the photochemistry of the A-T base pair are optically dark (1)pipi* states of charge-transfer character. Although rather high in energy at the ground-state equilibrium geometry, these states are substantially lowered in energy by the transfer of a proton, which thus neutralizes the charge separation. A remarkable difference of the energetics of the proton-transfer reaction is predicted for the two tautomers of A-T: in the Watson-Crick conformer, but not in the most stable conformer, a sequence of conical intersections connects the UV-absorbing (1)pipi* state in a barrierless manner with the electronic ground state. These conical intersections allow a very fast deactivation of the potentially reactive excited states in the Watson-Crick conformer. The results provide evidence that the specific hydrogen-bonding pattern of the Watson-Crick conformer endows this structure with a greatly enhanced photostability. This property of the Watson-Crick conformer of A-T may have been essential for the selection of this species as carrier of genetic information in early stages of the biological evolution.

Adenine↗
PubMed2006

Photophysics of intramolecularly hydrogen-bonded aromatic systems: ab initio exploration of the excited-state deactivation mechanisms of salicylic acid.

Excited state reaction paths and the corresponding energy profiles of salicylic acid have been determined with the CC2 method, which is a simplified version of singles-and-doubles coupled cluster theory. At crucial points of the potential energy hypersurfaces, single-point energy calculations have been performed with the CASPT2 method (second-order perturbation theory based on the complete active space self-consistent field reference). Hydrogen transfer along the intramolecular hydrogen bond as well as torsion and pyramidization of the carboxy group have been identified as the most relevant photochemical reaction coordinates. The keto-type planar S(1) state reached by barrierless intramolecular hydrogen transfer represents a local minimum of the S(1) energy surface, which is separated by a very low barrier from a reaction path leading to a low-lying S(1)-S(0) conical intersection via torsion and pyramidization of the carboxy group. The S(1)-S(0) conical intersection, which occurs for perpendicular geometry of the carboxy group, is a pure biradical. From the conical intersection, a barrierless reaction path steers the system back to the two known minima of the S(0) potential energy surface (rotamer I, rotamer II). A novel structure, 7-oxa-bicyclo[4.2.0]octa-1(6),2,4-triene-8,8-diol, has been identified as a possible transient intermediate in the photophysics of salicylic acid.

Computer Simulation↗
PubMed2006

Photophysics of organic photostabilizers. Ab initio study of the excited-state deactivation mechanisms of 2-(2'-hydroxyphenyl)benzotriazole.

Excited-state reaction paths and the corresponding energy profiles of 2-(2'-hydroxyphenyl)benzotriazole (TIN-H) have been determined with the CC2 (simplified singles-and-doubles coupled-cluster) ab initio method. Hydrogen transfer along the intramolecular hydrogen bond, torsion of the aromatic rings and pyramidization of the central nitrogen atom are identified as the most relevant photochemical reaction coordinates. The keto-type planar S(1) state reached by barrierless intramolecular hydrogen transfer is found to be unstable with respect to torsion. The latter mode, together with a moderate pyramidization of the central nitrogen atom, provides barrierless access to a S(1)-S(0) conical intersection. Only the pi-type orbitals of the aromatic rings are involved in the open-shell structures. The S(1)-S(0) conical intersection, which occurs for perpendicular geometry of the aromatic rings, is a pure biradical. From the conical intersection, a barrierless reaction path steers the system back to the enol-type minimum of the S(0) potential-energy surface, thus closing the photocycle. This photophysical pathway accounts for the remarkable photostability of the molecule.

Journal Article↗
PubMed2006

Resonance Raman spectrum of the solvated electron in methanol: simulation within a cluster model.

The microsolvation of the CH(3)OH(2) hypervalent radical in methanol clusters has been investigated by density functional theory. It is shown that the CH(3)OH(2) radical spontaneously decomposes within methanol clusters into protonated methanol and a localized solvated electron cloud. The geometric and electronic structures of these clusters as well as their vibrational frequencies have been characterized. Resonance Raman intensities, associated with the s --> p transition of the unpaired electron, have been estimated for CH(3)OH(2)M(n) (M = CH(3)OH, n = 1-3) clusters. It is shown that with increasing cluster size the simulated spectra converge toward the resonance Raman spectrum of the solvated electron in methanol measured recently by Tauber and Mathies (J. Am. Chem. Soc. 2004, 126, 3414). The results suggest that CH(3)OH(2)M(n) clusters are useful finite-size model systems for the computational investigation of the spectroscopic properties of the solvated electron in liquid methanol.

Computer Simulation↗
PubMed2006

Photoisomerizations of N4-hydroxycytosines.

A series of N4-hydroxycytosines, unsubstituted or substituted with methyl groups at N3 or C5 atoms of the heterocyclic ring, was studied using the matrix-isolation method. Depending on the absence or presence of the methyl substituent at N3 or C5 atoms (or at both of them) the syn or anti form of the compounds (or a mixture of both forms) was trapped from the gas phase into a low-temperature matrix. Upon UV (lambda > 295 nm) irradiation of the matrixes the syn --> anti as well as the anti --> syn photoisomerization reactions were observed. The syn and anti isomers of N4-hydroxycytosines were identified by comparing their experimental IR spectra with the theoretical spectra calculated at the DFT(B3LYP)/6-31G(d,p) level. For the majority of the studied compounds, the UV induced reactions led to a photostationary state. The position of the final photostationary state was found to be a sensitive function of weak interactions of a studied N4-hydroxycytosine with the matrix environment: solid argon or solid nitrogen. However, not all of the studied photoisomerizations led to a classical photostationary state. For some of the investigated N4-hydroxycytosines, the position of the photostationary state was shifted very strongly in favor of the photoproduct, whereas for some others the position was shifted so strongly in favor of the starting isomer that no photoisomerization was observed. These experimental findings were elucidated by theoretical investigations of the potential energy surfaces of the ground (S0) and first excited (S1) electronic states of N4-hydroxycytosine. The crucial result of these calculations (carried out at the CASSCF level) was the localization of a conical intersection between S0 and S1 at a structure with perpendicular orientation of the hydroxylimino group with respect to the heterocyclic ring.

Computer Simulation↗
PubMed2005

Tautomeric selectivity of the excited-state lifetime of guanine/cytosine base pairs: the role of electron-driven proton-transfer processes.

The UV spectra of three different conformers of the guanine/cytosine base pair were recorded recently with UV-IR double-resonance techniques in a supersonic jet [Abo-Riziq, A., Grace, L., Nir, E., Kabelac, M., Hobza, P. & de Vries, M. S. (2005) Proc. Natl. Acad. Sci. USA 102, 20-23]. The spectra provide evidence for a very efficient excited-state deactivation mechanism that is specific for the Watson-Crick structure and may be essential for the photostability of DNA. Here we report results of ab initio electronic-structure calculations for the excited electronic states of the three lowest-energy conformers of the guanine/cytosine base pair. The calculations reveal that electron-driven interbase proton-transfer processes play an important role in the photochemistry of these systems. The exceptionally short lifetime of the UV-absorbing states of the Watson-Crick conformer is tentatively explained by the existence of a barrierless reaction path that connects the spectroscopic (1)pi pi * excited state with the electronic ground state via two electronic curve crossings. For the non-Watson-Crick structures, the photochemically reactive state is located at higher energies, resulting in a barrier for proton transfer and, thus, a longer lifetime of the UV-absorbing (1)pi pi * state. The computational results support the conjecture that the photochemistry of hydrogen bonds plays a decisive role for the photostability of the molecular encoding of the genetic information in isolated DNA base pairs.

Base Pairing↗
PubMed2005

Photochemistry of pyrrole: time-dependent quantum wave-packet description of the dynamics at the 1pi sigma*-S0 conical intersections.

The photoinduced hydrogen-elimination reaction in pyrrole via the conical intersections of the two (1)pi sigma(*) excited states with the electronic ground states [(1)B(1)(pi sigma(*))-S(0) and (1)A(2)(pi sigma(*))-S(0)] have been investigated by time-dependent quantum wave-packet calculations. Model potential-energy surfaces of reduced dimensionality have been constructed on the basis of accurate multireference ab initio electronic-structure calculations. For the (1)B(1)-S(0) conical intersection, the model includes the NH stretching coordinate as the tuning mode and the hydrogen out-of-plane bending coordinate as the coupling mode. For the (1)A(2)-S(0) conical intersection, the NH stretching coordinate and the screwing coordinate of the ring hydrogens are taken into account. The latter is the dominant coupling mode of this conical intersection. The electronic population-transfer processes at the conical intersections, the branching ratio between the dissociation channels, and their dependence on the initial preparation of the system have been investigated for pyrrole and deuterated pyrrole. It is shown that the excitation of the NH stretching mode strongly enhances the reaction rate, while the excitation of the coupling mode influences the branching ratio of different dissociation channels. The results suggest that laser control of the photodissociation of pyrrole via mode-specific vibrational excitation should be possible. The calculations provide insight into the microscopic details of ultrafast internal-conversion processes in pyrrole via hydrogen-detachment processes, which are aborted at the (1)pi sigma(*)-S(0) conical intersections. These mechanisms are of relevance for the photostability of the building blocks of life (e.g., the DNA bases).

Journal Article↗
PubMed2005

Time-dependent quantum wave-packet description of the 1pi sigma* photochemistry of phenol.

The photoinduced hydrogen elimination reaction in phenol via the conical intersections of the dissociative 1pi sigma* state with the 1pi pi* state and the electronic ground state has been investigated by time-dependent quantum wave-packet calculations. A model including three intersecting electronic potential-energy surfaces (S0, 1pi sigma*, and 1pi pi*) and two nuclear degrees of freedom (OH stretching and OH torsion) has been constructed on the basis of accurate ab initio multireference electronic-structure data. The electronic population transfer processes at the conical intersections, the branching ratio between the two dissociation channels, and their dependence on the initial vibrational levels have been investigated by photoexciting phenol from different vibrational levels of its ground electronic state. The nonadiabatic transitions between the excited states and the ground state occur on a time scale of a few tens of femtoseconds if the 1pi pi*-1pi sigma* conical intersection is directly accessible, which requires the excitation of at least one quantum of the OH stretching mode in the 1pi pi* state. It is shown that the node structure, which is imposed on the nuclear wave packet by the initial preparation as well as by the transition through the first conical intersection (1pi pi*-1pi sigma*), has a profound effect on the nonadiabatic dynamics at the second conical intersection (1pi sigma*-S0). These findings suggest that laser control of the photodissociation of phenol via IR mode-specific excitation of vibrational levels in the electronic ground state should be possible.

Journal Article↗
PubMed2005

Photochemistry of water: the (H2O)5 cluster.

The structures of the cyclic water pentamer, the H3O+(H2O)3OH- zwitterion, and the H3O(H2O)3OH biradical form of the (H2O)5 cluster have been determined with the second-order Møller-Plesset method and with density-functional theory (DFT). The vertical singlet excitation energies of these structures have been calculated with the second-order approximated coupled-cluster method and with time-dependent DFT, respectively. The molecular and electronic structures of the H3O(H2O)3OH biradical have been characterized for the first time. The lowest electronic states of the biradical are slightly lower in energy than the vertically excited states of the covalent and zwitterionic (H2O)5 clusters and therefore are photochemically accessible from the latter. The electronic absorption spectrum of the biradical exhibits the characteristic features of the absorption spectrum of the hydrated electron. It is argued that the basic mechanisms of the photochemistry of water, in particular the generation of the hydrated electron by UV photons, can be unraveled by relatively straightforward electronic structure and dynamics calculations for finite-size water clusters.

Journal Article↗
PubMed2005

Ab initio studies on the radiationless decay mechanisms of the lowest excited singlet states of 9H-adenine.

The mechanisms that are responsible for the rapid deactivation of the (1)npi and( 1)pipi excited singlet states of the 9H isomer of adenine have been investigated with multireference ab initio methods (complete-active-space self-consistent-field (CASSCF) method and second-order perturbation theory based on the CASSCF reference (CASPT2)). Two novel photochemical pathways, which lead to conical intersections of the S(1) excited potential-energy surface with the electronic ground-state surface, have been identified. They involve out-of-plane deformations of the six-membered aromatic ring via the twisting of the N(3)C(2) and N(1)C(6) bonds. These low-lying conical intersections are separated from the minimum energy of the lowest ((1)npi) excited state in the Franck-Condon region by very low energy barriers (of the order of 0.1 eV). These properties of the S(1) and S(0) potential-energy surfaces explain the unusual laser-induced fluorescence spectrum of jet-cooled 9H-adenine, showing sharp structures only in a narrow energy interval near the origin, as well as the extreme excess-energy dependence of the lifetime of the singlet excited states. It is suggested that internal-conversion processes via conical intersections, which are accessed by out-of-plane deformation of the six-membered ring, dominate the photophysics of the lowest vibronic levels of adenine in the gas phase, while hydrogen-abstraction photochemistry driven by repulsive (1)pisigma states may become competitive at higher excitation energies. These ultrafast excited-state deactivation processes provide adenine with a high degree of intrinsic photostability.

Adenine↗
PubMed2004

Efficient deactivation of a model base pair via excited-state hydrogen transfer.

We present experimental and theoretical evidence for an excited-state deactivation mechanism specific to hydrogen-bonded aromatic dimers, which may account, in part, for the photostability of the Watson-Crick base pairs in DNA. Femtosecond time-resolved mass spectroscopy of 2-aminopyridine clusters reveals an excited-state lifetime of 65 +/- 10 picoseconds for the near-planar hydrogen-bonded dimer, which is significantly shorter than the lifetime of either the monomer or the 3- and 4-membered nonplanar clusters. Ab initio calculations of reaction pathways and potential-energy profiles identify the mechanism of the enhanced excited-state decay of the dimer: Conical intersections connect the locally excited 1pipi* state and the electronic ground state with a 1pipi* charge-transfer state that is strongly stabilized by the transfer of a proton.

Aminopyridines↗
PubMed2004

Time-dependent quantum wave-packet description of the 1pi sigma* photochemistry of pyrrole.

The photoinduced hydrogen elimination reaction in pyrrole via the conical intersection of the 1B1 (1pi sigma*) excited state with the electronic ground state has been investigated by time-dependent quantum wave-packet dynamics. A two-dimensional model potential-energy surface has been constructed as a function of the NH stretching and the hydrogen out-of-plane bending mode, employing multi-reference ab initio electronic-structure methods. The branching ratio of the reactive flux at the conical intersection has been investigated in dependence on the initial vibrational state of the molecule. The results suggest that laser control of the photodissociation of pyrrole via mode-specific vibrational excitation should be possible.

Kinetics↗