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Anirban Sain

Publications and source records attributed to Anirban Sain.

4 recordsLinked to original sources

Rupture of an extended object: a many-body Kramers calculation.

We show how an extended object's strain field is redistributed when the material ruptures under by thermal activation. Through analytical calculations and molecular dynamics simulations, we show that in a polymer chain the distribution is exponentially localized around the point of rupture. The length scale of localization is determined by the strain and microscopic parameters of the interaction potential. We also derive an analytic expression for the rate of bond rupture by consistently treating the collective modes of the chain and the effect of dissipation on those modes. Our theoretical estimates are of the same order of magnitude as those obtained by simulations, as compared to earlier theories which had overestimated the rate of rupture by approximately two orders of magnitude. It is also noteworthy that the correction comes about through the effective attempt frequency rather than the effective barrier height.

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Phase separation of a binary fluid in the inertia-dominated regime.

The phase separation kinetics of a binary fluid is studied analytically through an effective one-fluid model with a random force spectrum determined self-consistently: the rate of kinetic energy injection by the random force is consistent with the droplet coalescence rate. Our detailed results for the rates of energy dissipation and kinetic energy decay are consistent with previous numerical studies. We find that simple nontrivial scaling, if any, is associated with a new universality class where the velocity length scale follows .

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Influence of tether dynamics on forced Kramers escape from a kinetic trap.

When a trapped particle is subject to the tension of a massive frictional spring (the "tether"), the escape rate increases due to a lowering of the escape barrier. However, in addition, the escape-rate prefactor is influenced by the mass and drag contributed by the spring. We solve the full Kramers escape problem for the coupled system using a technique attributed to Langer. The prefactor in the escape rate is significantly modified by the spring parameters even in the strong-damping limit. The biophysical relevance of this problem is briefly discussed.

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Chain persistency in single-stranded DNA.

We develop a theoretical approach to hairpin-loop formation of single-stranded (ss) DNA by treating the strand as a two-state system in which bases are either "stacked" or "unstacked." The looping kinetics of ssDNA is shown to be intrinsically different from that of a wormlike chain; it is mainly controlled by stacking-breakage probability, not by the mean curvature of loops, and highly sensitive to the composition of the loop as seen in recent experiments. Our estimate of a stacking energy for poly ( dA ), -3.9 kcal/mol, is consistent with known results.

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