Biomedical subjects
Publications and source records attributed to Anna Shestakova.
The genome of Aspergillus ustus VKPM-F2030 strain was resequenced and assembled to achieve better quality and consistency of the assembly. It is the largest known genome of Aspergillus section Usti corresponding to 42 Mb and 25 contigs. This work can serve for further genomic investigations of Aspergillus fungi.
Speech sounds representing different phonetic categories are typically easier to discriminate than sounds belonging to the same category. This phenomenon is referred to as the phoneme boundary effect. We aimed to determine whether, at neural level, this effect is indeed due to crossing the phoneme boundary. The mismatch negativity (MMN) brain response was measured for across- and within-category changes in Finnish phoneme length in native speakers and second-language users of Finnish as well as non-Finnish-speaking subjects. The results showed that the MMN amplitude was enhanced in the native speakers in comparison with the two non-native groups which, in turn, did not differ from each other in MMN amplitude. The response pattern to across- and within-category changes, however, was the same in all groups regardless of whether or not they had the phoneme categories. Thus, the responses could not be determined by crossing the phoneme boundary. Rather, the enhancement of MMN amplitude in the native speakers is likely to be due to the activation of native-language phonetic prototypes. The second-language users, however, did not seem to have automatic access to Finnish prototypes.
Defects in conserved oligomeric Golgi (COG) complex result in multiple deficiencies in protein glycosylation. On the other hand, acute knock-down (KD) of Cog3p (COG3 KD) causes accumulation of intra-Golgi COG complex-dependent (CCD) vesicles. Here, we analyzed cellular phenotypes at different stages of COG3 KD to uncover the molecular link between COG function and glycosylation disorders. For the first time, we demonstrated that medial-Golgi enzymes are transiently relocated into CCD vesicles in COG3 KD cells. As a result, Golgi modifications of both plasma membrane (CD44) and lysosomal (Lamp2) glycoproteins are distorted. Localization of these proteins is not altered, indicating that the COG complex is not required for anterograde trafficking and accurate sorting. COG7 KD and double COG3/COG7 KD caused similar defects with respect to both Golgi traffic and glycosylation, suggesting that the entire COG complex orchestrates recycling of medial-Golgi-resident proteins. COG complex-dependent docking of isolated CCD vesicles was reconstituted in vitro, supporting their role as functional trafficking intermediates. Altogether, the data suggest that constantly cycling medial-Golgi enzymes are transported from distal compartments in CCD vesicles. Dysfunction of COG complex leads to separation of glycosyltransferases from anterograde cargo molecules passing along secretory pathway, thus affecting normal protein glycosylation.
The mismatch negativity (MMN) component of the auditory event-related potential was used to determine the effect of native language, Russian, on the processing of speech-sound duration in a second language, Finnish, that uses duration as a cue for phonological distinction. The native-language effect was compared with Finnish vowels that either can or cannot be categorized using the Russian phonological system. The results showed that the duration-change MMN for the Finnish sounds that could be categorized through Russian was reduced in comparison with that for the Finnish sounds having no Russian equivalent. In the Finnish sounds that can be mapped through the Russian phonological system, the facilitation of the duration processing may be inhibited by the native Russian language. However, for the sounds that have no Russian equivalent, new vowel categories independent of the native Russian language have apparently been established, enabling a native-like duration processing of Finnish.
Some languages, such as Finnish, use speech-sound duration as the primary cue for a phonological quantity distinction. For second-language (L2) learners, quantity is often difficult to master if speech-sound duration plays a less important role in the phonology of their native language (L1). By comparing the categorization performance of native speakers of Finnish, Russian L2 users of Finnish, and non-Finnish-speaking Russians, the present study aimed to determine whether the L2 users, whose native language does not have a quantity distinction, have been able to establish categories for Finnish quantity. The results suggest that the native speakers and some of the L2 users that have been exposed to Finnish for a longer time have access to phonological quantity categories, whereas the L2 users with shorter exposure and the non-Finnish-speaking subjects do not. In addition, by comparing categorization and discrimination tasks it was found that the native speakers show a phoneme-boundary effect for quantity that is cued by duration only, whereas the non-Finnish-speaking subjects and the subjects with low proficiency in Finnish do not.
This study aimed at determining how the human brain automatically processes phoneme categories irrespective of the large acoustic inter-speaker variability. Subjects were presented with 450 different speech stimuli, equally distributed across the [a], [i], and [u] vowel categories, and each uttered by a different male speaker. A 306-channel magnetoencephalogram (MEG) was used to record N1m, the magnetic counterpart of the N1 component of the auditory event-related potential (ERP). The N1m amplitude and source locations differed between vowel categories. We also found that the spectrum dissimilarities were reproduced in the cortical representations of the large set of the phonemes used in this study: vowels with similar spectral envelopes had closer cortical representations than those whose spectral differences were the largest. Our data further extend the notion of differential cortical representations in response to vowel categories, previously demonstrated by using only one or a few tokens representing each category.
We recorded magnetic brain activity from healthy human newborns when they heard frequency changes in an otherwise repetitive sound stream. We were able to record the magnetic counterpart of the mismatch negativity (MMN) previously described only with electric recordings in infants. The results show that these recordings are possible, although still challenging due to the small head size and head movements. The modelling of the neural sources underlying the recorded responses suggests cortical sources in the temporal lobes.
As indexed by electrophysiological measures, in native speakers of a language with linguistically significant opposition between short and long phonemes, the pre-attentive detection accuracy of duration changes in speech sounds was tuned in comparison with that in non-speech sounds. This was not observed in advanced second-language users of the same language, suggesting that second-language acquisition does not lead to speech-specific tuning of the duration processing as does native language acquisition in early childhood.
OBJECTIVE: In this study, we investigated learning-related changes in auditory event-related potentials (ERPs) of Finnish-speaking 3-6-year-old children caused by learning French language. METHODS: Using an oddball paradigm, ERPs to sounds of French language were recorded in the two groups of healthy children: those who were learning French (experimental group) and those who were not learning any foreign language (control peers). RESULTS: When the children from the experimental group were exposed to the foreign language, they automatically developed French-specific memory traces that helped them to discriminate, categorize, and pronounce utterances of the new language as indicated by the mismatch negativity (MMN) component of the ERPs in a previous study. We found that the learning process was also reflected by changes in P3a and late difference negativity (LDN) responses. Unlike MMN and P3a, the LDN has been discovered relatively recently and its functional role remains unclear. Similarly, as the MMN magnitude increased during the learning process, an increase of the P3a (known to reflect the involuntary attention switching toward deviant stimuli) and LDN amplitudes was observed. The ERPs of the control peers did not change significantly over the test period. CONCLUSIONS: When phonemes of a foreign language are learned, this process is accompanied with the increase in the MMN, P3a, and LDN amplitudes in children. Though the functional significance of LDN remains to be further investigated, our results support its possible link to reorienting processes following distraction.
We investigated the brain mechanisms enabling one automatically discriminate phoneme category irrespective of the large inter-speaker variability in the acoustic features of the voices. For this purpose, subjects were presented with 450 different speech stimuli, each uttered by a different speaker, belonging to three vowel categories, while a 306-channel magnetoencephalogram (MEG) was obtained to record the magnetic counterpart of the mismatch negativity (MMNm), elicited only when sensory memory traces for repetitive sounds are formed in the auditory cortex. Despite this wide acoustic variation, category changes elicited prominent MMNm responses, which were considerably stronger in the left than in the right hemisphere in the right-handed subjects. These results implicate the presence of long-term memory traces for vowels, which can recognize the vowel-specific invariant code enabling correct vowel percept even in the presence of realistic acoustic variation.
Using 3-6-year-old children as subjects, we describe the neural plasticity accompanying the concurrent learning of a foreign language in a natural environment. Children were monitored for 6 months as they either enrolled in schools or daycare centers where only Finnish was spoken (Control group) or as they joined a French school or a daycare center where French was spoken 50-90% of the time (Experimental group). Whereas mismatch negativity (MMN)--a brain's electrical change-detection response--for a French speech contrast was initially absent or very small in both groups, it was conspicuous 2 months after Finnish children had joined a French kindergarten. Consequently, the data suggest that youngsters can learn to distinguish non-native speech sounds in natural language environment without any special training in just a couple of months. Accordingly, these data herald the vast potential MMN may entail for studying language learning, especially in situations where behavioral responses cannot be readily elicited.
The evidence in adults suggests that at a cortical level simple and complex sounds are processed by partly divergent subsystems. In children, central processing of sounds differing in complexity has not been investigated. Therefore, the present study examined preconscious discrimination of the differences in sound frequency and duration as a function of sound complexity in 8-10-year-old children. A mismatch negativity (MMN) component of auditory event-related potentials was elicited in a paradigm where 'deviant' (rare) stimuli were either shorter in duration or higher in frequency than the 'standard' (repetitive) sounds. Vowels and vowel-matched complex and simple tones were presented in separate sequences. The stimulus complexity effects were sizable and appeared as larger areas and shorter and more consistent latencies of the MMNs, elicited by more complex stimuli. In addition, the vowel frequency MMN showed left hemisphere preponderance compared to the complex tone frequency MMN. No such effect was found for the duration decrement MMNs. In addition, the complex tone duration decrement MMN was distributed posteriorly to either the vowel or sinusoidal tone MMNs. A late discriminative negativity, LDN, did not show consistent effects of sound complexity. In conclusion, acoustically rich sound content facilitates auditory sensory discrimination in 8-10-year-old children. The sound 'speechness' effects were not as robust though present. Unlike adults, children demonstrated high intersubject variability in discriminating spectrally poor, but not rich, sounds. The discrimination of the sound duration appears to differ from that of the sound frequency in nature and, consequently, in the neural substrates.