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Ard A Louis

Publications and source records attributed to Ard A Louis.

4 recordsLinked to original sources

Phase separation of a model binary polymer solution in an external field.

The phase separation of a simple binary mixture of incompatible linear polymers in solution is investigated using an extension of the sedimentation equilibrium method, whereby the osmotic pressure of the mixture is extracted from the density profiles of the inhomogeneous mixture in a gravitational field. In Monte Carlo simulations the field can be tuned to induce significant inhomogeneity, while keeping the density profiles sufficiently smooth for the macroscopic condition of hydrostatic equilibrium to remain applicable. The method is applied here for a simplified model of ideal but mutually avoiding polymers, which readily phase separate at relatively low densities. The Monte Carlo data are interpreted with the help of an approximate bulk phase diagram calculated from a simple, second-order virial coefficient theory. By derivation of effective potentials between polymer centers of mass, the binary mixture of polymers is coarse-grained to a "soft colloid" picture reminiscent of the Widom-Rowlinson model for incompatible atomic mixtures. This approach significantly speeds up the simulations and accurately reproduces the behavior of the full monomer resolved model.

Journal Article↗

Inhibition of protein crystallization by evolutionary negative design.

Why are proteins so hard to crystallize? We propose an 'evolutionary negative design' principle to explain this difficulty. Proteins have evolved to avoid crystallization because crystallization compromises the viability of the cell. Evolutionary negative design is supported by much evidence in the literature, including the effect of mutations on the crystallizability of a protein, the correlations found in the properties of crystal contacts in bioinformatics databases, and the positive use of protein crystallization by bacteria and viruses.

Biophysical Phenomena↗

Colloid-polymer mixtures in the protein limit.

We computed the phase-separation behavior and effective interactions of colloid-polymer mixtures in the "protein limit," where the polymer radius of gyration is much larger than the colloid radius. For ideal polymers, the critical colloidal packing fraction tends to zero, whereas for interacting polymers in a good solvent the behavior is governed by a universal binodal, implying a constant critical colloid packing fraction. In both systems the depletion interaction is not well described by effective pair potentials but requires the incorporation of many-body contributions.

Colloids↗