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Arnold Maliniak

Publications and source records attributed to Arnold Maliniak.

10 recordsLinked to original sources
PubMed2006

Dynamical and structural properties of charged and uncharged lidocaine in a lipid bilayer.

Molecular dynamics computer simulations have been performed to investigate dynamical and structural properties of a lidocaine local anesthetic. Both charged and uncharged forms of the lidocaine molecule were investigated. Properties such as membrane area per lipid, diffusion, mass density, bilayer penetration and order parameters have been examined. An analysis of the lidocaine interaction with the lipid surrounding according to a simple mean field theory has also been performed. Almost all examined properties were found to depend on which of the two forms of lidocaine, charged or uncharged, is studied. The overall picture is a rather static behavior determined by the lipids for the charged molecules and more mobile situation of the uncharged form with higher diffusion and lower orientational and positional order.

Anesthetics, Local↗
PubMed2006

Mesomorphism in columnar phases studied by solid-state nuclear magnetic resonance.

In this paper, we present 13C and 1H NMR investigations of 2, 3, 6, 7, 10, 11-hexahexyl-thiotriphenylene (HHTT). The measurements were carried out under both static and magic-angle spinning conditions. The phase diagram of HHTT is K<-->H<-->D(hd)<-->I , where H is a helical phase and D(hd) is a columnar liquid crystal. The motivation was to characterize the molecular order and dynamics and to investigate differences at the molecular level between the two mesophases: H and D(hd). It is shown that D(hd) is a conventional columnar liquid crystal, where the molecular core undergoes fast rotation about the symmetry axis. The orientational order in this mesophase is lower and the temperature dependence of the order parameter is steeper than in other triphenylene-based compounds. On the other hand, in the helical phase the core, similarly to the solid phase, is essentially rigid. The difference between the solid and helical phases is mainly manifested in an increased mobility of the aliphatic chains observed in the latter phase. In addition, the sample exhibits thermal history effects, which are observed in the different behavior upon cooling and heating.

Journal Article↗
PubMed2006

Molecular conformations of a disaccharide investigated using NMR spectroscopy.

The molecular structure of alpha-L-Rhap-(1--> 2)-alpha-L-Rhap-OMe has been investigated using conformation sensitive NMR parameters: cross-relaxation rates, scalar 3J(CH) couplings and residual dipolar couplings obtained in a dilute liquid crystalline phase. The order matrices of the two sugar residues are different, which indicates that the molecule cannot exist in a single conformation. The conformational distribution function, P(phi, psi) related to the two glycosidic linkage torsion angles phi and psi was constructed using the APME method, valid in the low orientational order limit. The APME approach is based on the additive potential (AP) and maximum entropy (ME) models. The analyses of the trajectories generated in molecular dynamics and Langevin dynamics (LD) computer simulations gave support to the distribution functions constructed from the experimental NMR parameters. It is shown that at least two conformational regions are populated on the Ramachandran map and that these regions exhibit very different molecular order.

Carbohydrate Conformation↗
PubMed2005

Conformational analysis of a tetrasaccharide based on NMR spectroscopy and molecular dynamics simulations.

The conformational preference of the human milk oligosaccharide lacto-N-neotetraose, beta-d-Galp-(1 --> 4)-beta-d-GlcpNAc-(1 --> 3)-beta-d-Galp-(1 --> 4)-d-Glcp, has been analyzed using (1)H,(1)H T-ROESY and (1)H,(13)C trans-glycosidic J coupling experiments in isotropic solution and (1)H,(13)C residual dipolar couplings (RDCs) obtained in lyotropic liquid crystalline media. Molecular dynamics simulations of the tetrasaccharide with explicit water as the solvent revealed that two conformational states are significantly populated at the psi glycosidic torsion angle, defined by C(anomeric)-O-C-H, of the (1 --> 3)-linkage. Calculation of order parameters, related to the molecular shape, were based on the inertia tensor and fitting of experimental RDCs to different conformational states showed that psi(+) > 0 degrees is the major and psi(-) < 0 degrees is the minor conformation in solution, in complete agreement with a two-state analysis based on the T-ROESY data. Attention was also given to the effect of salt (200 mM NaCl) in the anisotropic medium, which was a ternary mixture of n-octyl-penta(ethylene glycol), n-octanol, and D(2)O.

Carbohydrate Sequence↗
PubMed2005

Molecular structure extracted from residual dipolar couplings: diphenylmethane dissolved in a nematic liquid crystal.

This paper describes an analysis of 1H-1H residual dipolar couplings (RDCs) in diphenylmethane (DPM) dissolved in a nematic liquid crystal, reported by Celebre et al. [J. Chem. Phys. 118, 6417 (2003)]. In that article, the conformational distribution function for DPM was extracted from the RDCs, using the additive potential (AP) model which is based on the molecular-field theory. The AP approach is a powerful, and frequently used, tool for analysis of the nuclear-magnetic-resonance (NMR) parameters in liquid crystals. It requires, however, a priori knowledge of the functional form of the torsional potential, which may even for a simple molecule, such as DPM, be complicated to determine. Here, we analyze the same set of the RDCs using our APME procedure, which is a hybrid model based on the AP approach and maximum entropy (ME) theory. The APME procedure does not require any assumptions about the functional form of the torsional potential and, in contrast with the ME method, is applicable to weakly ordered systems. In the investigation reported in the present study, the results from the APME analysis are in good agreement with the AP interpretation, whereas the ME approach essentially fails in the extraction of the conformational distribution function for DPM.

Journal Article↗
PubMed2005

Heteronuclear dipolar recoupling in solid-state nuclear magnetic resonance by amplitude-, phase-, and frequency-modulated Lee-Goldburg cross-polarization.

This paper presents a theoretical, numerical, and experimental study of phase- and frequency-switched Lee-Goldburg cross-polarization (FSLG-CP) under magic-angle spinning conditions. It is shown that a well-defined amplitude modulation of one of the two radio-frequency (rf) fields in the FSLG-CP sequence results in highly efficient heteronuclear dipolar recoupling. The recoupled dipolar interaction is gamma-encoded and, under ideal conditions, the effective spin Hamiltonian is equivalent to that in continuous-wave Lee-Goldburg CP. In practice, however, FSLG-CP is less susceptible to rf field mismatch and inhomogeneity, and provides better suppression of (1)H spin diffusion. The performance of FSLG-CP is experimentally demonstrated on liquid-crystalline samples exhibiting motionally averaged dipolar couplings.

Journal Article↗
PubMed2004

Measurements of motionally averaged heteronuclear dipolar couplings in MAS NMR using R-type recoupling.

A novel MAS NMR approach is presented for the determination of heteronuclear dipolar couplings in unoriented materials. The technique is based on the proton-detected local field (PDLF) protocol, and achieves dipolar recoupling by R-type radio-frequency irradiation. The experiment, which is called R-PDLF spectroscopy, is demonstrated on solid and liquid-crystalline systems. For mobile systems, it is shown that the R-PDLF scheme provides better dipolar resolution as compared to techniques combining conventional separated local field (SLF) spectroscopy with R-type recoupling.

Alanine↗
PubMed2003

Separated local field spectroscopy of columnar and nematic liquid crystals.

We are in this work comparing the efficiencies of various 1H-13C separated local field (SLF) experiments when applied to columnar and nematic liquid crystals. In particular, the performances of the conventional SLF, proton-detected local field (PDLF), and polarization inversion spin exchange at the magic angle (PISEMA) methods in terms of spectral resolution, robustness, and ability to measure long-range couplings are investigated. The PDLF sequence provides in most cases the best dipolar resolution. This is especially obvious for weakly coupled 1H-13C spin pairs.

Anthraquinones↗
PubMed2002

Conformational distribution function of a disaccharide in a liquid crystalline phase determined using NMR spectroscopy.

A new approach is proposed for analysis of NMR parameters in general, and residual dipolar couplings in particular. The method, which enables construction of the conformational distribution function, is applied to a disaccharide dissolved in a dilute liquid crystal. Our approach rests on two models that have been frequently used for interpretations of dipolar couplings in liquid crystals: (i) the additive potential model (AP) and (ii) the maximum entropy method (ME). These models suffer, however, from serious limitations: the AP model requires an a priori knowledge of the functional form of the torsional potential, while the ME approach gives the flattest possible distribution, which results in an incorrect description of systems with low orientational order. The procedure presented herein (APME) is valid in the low-order limit. The intraresidue dipolar couplings were used to determine the orientational order, while the conformational distribution function is constructed from the interresidue dipolar- and J couplings, together with NOEs. Very good agreement between experimental and calculated NMR parameters was observed. An attempt to analyze the experimental data using a single molecular conformation resulted in significantly larger errors. This study demonstrates that the APME method can be used as a tool in structure determination of flexible molecules in dilute liquid crystals.

Carbohydrate Conformation↗