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Atsushi Sogabe

Publications and source records attributed to Atsushi Sogabe.

7 recordsLinked to original sources

Apolipoprotein E regulates primary cultured human mesangial cell proliferation.

BACKGROUND: The role of apolipoprotein (apo) E in kidney disease is still unclear. Animal studies have been performed, but it is doubtful if the conclusions are applicable to human beings. The objective of this study was to determine how apo E acts on human kidneys using primary cultured normal human mesangial cells (NHMCs) rather than animals used in previous studies. METHODS: apo E and its isoforms E2, E3 and E4, or combinations with apo B were cocultured with primary NHMCs in serum-free medium. Premix WST-1 Cell Proliferation Assay System and DNA-Prep Reagent System were used to measure the proliferation and apoptosis of NHMCs, respectively. RESULTS: (1) apo E itself increased NHMC proliferation at 24 h of culture, while it inhibited this proliferation after 48 h. (2) At 72 h of culture, apo E alone inhibited NHMC proliferation at concentrations higher than 0.78 microg/ml in concentration-dependent manner. (3) When co-cultured with both apo E and apo B, NHMC proliferation was higher than that with apo E alone and lower than that with apo B alone. (4) At 72 h of culture, apo E2, E3 and E4 inhibited NHMC proliferation at different intensities, with no proliferative effect observed. (5) Neither apo E nor apo B caused NHMC apoptosis. CONCLUSION: apo E regulates primary NHMC proliferation by (1) inhibiting NHMC proliferation or reducing NHMC proliferation induced by apo B, which implies that apo E has a protective effect on the kidney, and (2) increasing the proliferation under certain conditions.

Apolipoprotein E2↗

Directed evolution of Pseudomonas aeruginosa lipase for improved amide-hydrolyzing activity.

A lipase from Pseudomonas aeruginosa was subjected to directed molecular evolution for increased amide-hydrolyzing (amidase) activity. A single round of random mutagenesis followed by screening for hydrolytic activity for oleoyl 2-naphthylamide as compared with that for oleoyl 2-naphthyl ester identified five mutants with 1.7-2.0-fold increased relative amidase activities. Three mutational sites (F207S, A213D and F265L) were found to affect the amidase/esterase activity ratios. The combination of these mutations further improved the amidase activity. Active-site titration using a fluorescent phosphonic acid ester allowed the molecular activities for the amide and the ester to be determined for each mutant without purification of the lipase. A double mutant F207S/A213D gave the highest molecular activity of 1.1 min(-1) for the amide, corresponding to a 2-fold increase compared with that of the wild-type lipase. A structural model of the lipase indicated that the mutations occurred at the sites near the surface and remote from the catalytic triad, but close to the calcium binding site. This study is a first step towards understanding why lipases do not hydrolyze amides despite the similarities to serine proteases in the active site structure and the reaction mechanism and towards the preparation of a general acyl transfer catalyst for the biotransformation of amides.

Amides↗

Water-swellable polyelectrolyte microgels polymerized in an inverse microemulsion using a nonionic surfactant.

A series of poly(dimethylacrylamide-co-2-acrylamido-2-methyl-1-propanesulfonic acid) microgels slightly crosslinked by methylene-bis-acrylamide (MBA) were polymerized in a novel inverse microemulsion polymerization (IMEP) system. To determine a suitable composition of the IMEP system, the phase diagram of a pseudoternary system was made. The pseudoternary polymerization system consisted of n-hexane, a nonionic surfactant (polyoxyethylene oleyl ether, C18En), and an aqueous monomer solution. Polymerization was performed in a single-phase reversed micelle solution. The reversed micelles were about 50 nm in diameter, as determined by FF-TEM. The viscometric characteristics of the polymers extracted from the IMEP system were studied in 3 mM sodium chloride aqueous solution. The intrinsic viscosity values for the noncrosslinked and crosslinked (0.1 mol% MBA was incorporated) samples were 25 and 7.4 dl/g, respectively. The overlap concentration (c*) of crosslinked polymer microgel occurred at c[eta] = 1 in the solvent. When the volume fraction (phi) of the microgel was 0.7, the value of the apparent yield stress of the microgel solution was observed. These results show that the microgel has a significant thickening effect above c* due to friction between the microgel particles. It is assumed that the microgels polymerized in a confined space retain the shape or size of the nanosized reactor with a diameter on the order of 50 nm.

Cross-Linking Reagents↗

Architecture and solution properties of AB-type brush-block-brush amphiphilic copolymers via ATRP techniques.

Atom transfer radical polymerization (ATRP) was applied to the synthesis of AB-type brush-block-brush amphiphilic copolymers. The procedure included the following steps: (1). ATRP of methacryloyl-terminated poly(ethylene glycol methylether) macromonomer (PEG-MC) gave well-defined PEG brush macroinitiator, (2). subsequent ATRP of 2-hydroxyethyl methacrylate (HEMA) with this brush macroinitiator provided PEG brush-block-PHEMA (brush-block-coil) diblock copolymers, (3). esterification of the pendant hydroxy groups of PHEMA block with 2-bromoisobutyryl bromide yielded a block-type polyinitiator, brush-block-poly(2-(2-bromoisobutyryloxy)ethyl methacrylate) (PBIEM), (4). ATRP of HEMA using brush-block-PBIEM as polyinitiator provided AB-type brush-block-brush amphiphilic copolymers. Dilute-solution properties of such AB-type copolymer brushes were investigated by static and dynamic light scatterings. As a result, this copolymer exhibited a slightly ellipsoidal shape, i.e., Janus-type structure, in solution.

Anisotropy↗

Highly sensitive active-site titration of lipase in microscale culture media using fluorescent organophosphorus ester.

The fluorescent organophosphorus esters, diethyl 4-methylumbelliferyl phosphate (1), ethyl hexyl 4-methylumbelliferyl phosphate (2) and ethyl 4-methylumbelliferyl heptylphosphonate (3) have been synthesized and evaluated as a sensitive active-site titrant of lipase. The phosphorus esters 1, 2 and 3 inactivated the lipase from Pseudomonas aeruginosa (LPL-312) with a second-order rate constant for enzyme inactivation (k(on)) of 1.8, 32 and 5600 s(-1) M(-1), respectively. The long-chain phosphonate 3 turned out to be the most potent inactivator of the lipase to release a stoichiometric amount of highly fluorescent 4-methylumbelliferone (4MU) as a leaving group. By using the phosphate 3 as an active-site titrant, the low concentration (4.5 nM) of the active lipase was titrated successfully. The highly sensitive active-site titration with 3 enabled the direct determination of the concentration of the active lipase expressed in a microscale culture medium. Although the expression level differed significantly from one culture to another, the titrated concentration of the active lipase was proportional to the apparent activity for all the independent cultures. The molecular activity calculated for the expressed lipase was found to be the same as that of the purified lipase. The present active-site titration method is widely applicable to the biocatalytic engineering of lipases such as directed evolution, site-directed mutagenesis, chemical modification and immobilization.

Binding Sites↗

Preliminary crystallographic studies of the creatinine amidohydrolase from Pseudomonas putida.

Creatinine amidohydrolase (creatininase; EC 3.5.2.10) from Pseudomonas putida has been overexpressed in Escherichia coli and crystallized by the hanging-drop method. The crystal belongs to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 102.0, b = 150.7, c = 167.1 A. Native data were collected to 1.8 A resolution by a rotation method at 100 K using an ADSC Quantum 4R CCD detector with synchrotron radiation.

Amidohydrolases↗

Conversion of a typical catalase from Bacillus sp. TE124 to a catalase-peroxidase by directed evolution.

We have converted a typical catalase from Bacillus sp. TE124 to a catalase-peroxidase using DNA shuffling and error-prone PCR. A triple mutant, R47H/R356C/D374N, that showed significantly reduced catalase activity and increased peroxidase activity was identified by screening mutant libraries. When single mutant--R47H, R356C and D374N--were generated by site-directed mutagenesis, conserved Arg-47, located on the distal side of the prosthetic heme group in the superfamily of typical catalases, was found to be responsible for the conversion of catalase to catalase-peroxidase. To further clarify the role of Arg-47, arginine was replaced with different amino acids--alanine, lysine, aspartic acid, glutamic acid, glutamine, phenylalanine, tryptophan and tyrosine--and the mutant enzymes were assayed. All of the arginine mutants had increased peroxidase activity coupled with reduced catalase activity. Among these mutants, R47W exhibited the highest peroxidase activity, while R47E and R47Q not only had increased peroxidase activity but also retained relatively high catalase activity. These results suggest that tryptophan plays a key role in the catalytic mechanism of the peroxidase reaction and that glutamic acid and glutamine facilitate both catalatic and peroxidatic reactions.

Journal Article↗