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B N Belintsev

Publications and source records attributed to B N Belintsev.

18 recordsLinked to original sources

Model of pattern formation in epithelial morphogenesis.

One of the most universal events in morphogenesis is the formation of domains of morphologically polarized cells in the initially homogeneous epithelial sheets. We investigate the possibility of considering this process as a phenomenon of self-organization which is based upon the following experimentally proven mechanochemical cell properties: (1) a capacity of individual cells for morphological polarization considered as a bistable "all-or-none" transition of a cell from a non-polarized to a polarized state; (2) transmission of this capacity from one cell to another on their contacts; (3) feedback relations between co-operative cell polarization and tangential elastic tensions in a cell sheet: cell polarization increases tangential tensions whereas the latter inhibit further cell polarization. We have constructed a phenomenological model which formally expresses the above properties. Its mathematical description includes but few macroscopic parameters available to experimental investigation and controlled changes. The analysis of the collective dynamic regimes of cell polarization demonstrates that variations of some non-specific parameters leads to spontaneous transition in the morphology of cell layers accompanied by symmetry breaking (Turing's instability). Under these conditions either long-range ordered patterns of cell polarization (including hexagonal cell nets) or non-regular spotted structures can emerge. In the particular case of a sheet having fixed complete dimensions and lacking any external elastic bonds a stable macrostate is created; it corresponds to the sheet's binary subdivision into polarized and non-polarized cell domains of size-invariant proportions. The model conclusions are compared with the morphogenetical processes in sea-urchin development, the morphogenesis of skin derivates and artificially induced budding in hydrozoa.

Animals

The spatial form self-organization in the development of Dictyostelium discoideum.

The emergence of the developmental axis within the early aggregate Dictyostelium discoideum is analyzed. Macroscopic parameters of physical continuum such as hydrostatic pressure and surface tension are applied to the cell mass. Cell chemotaxis, differential rate of attractant production by the prestalk and prespore cells and attractant diffusion are shown to be sufficient factors for the Dictyostelium slug morphogenesis.

Biophysical Phenomena

On the promoter complex formation rate of E. coli RNA polymerases with T7 phage DNA.

Influence of ionic strength on the kinetics of the promoter complex formation between E. coli RNA polymerase and T7 phage DNA was investigated using a membrane filter assay. The enzyme-promoter association rate constant was determined. It varies from 10(9) to 3 x 10(7) M-1 sec-1 when the ionic strength is changed from zero to 0.15 M NaCl. Basing on the theoretical analysis of experimental data obtained the model for the promoter site selection assuming the enzyme sliding along the DNA is discussed.

DNA, Viral

The effect of the superhelicity on the double helix twist angle in DNA.

An attempt to estimate the relative contributions of twisting and bending to the free energy of superhelix formation from the relaxed DNA is undertaken. The extent of teritiary ordering (number of DNA axis turns tau) and that of secondary ordering (duplex twist angle beta) have been taken as thermodynamical parameters, which characterize the state of the supercoild DNA at the fixed linking number (Lk) value. Such a thermodynamical approach implies the phenomenological parameters of rigidities of twisting and supercoiling (Gbeta, Gtau). Gtau/Gbeta ratio is estimated from the presented experimental data on the winding of the double helix upon increasing the ionic strength when twist alterations are followed by circular dichroism method. The adequacy of such interpretation of CD spectra changes are discussed. The values of Gtau and Gbeta are estimated to be of the same order of magnitude.

Cell Line

Influence of base sequence on the stability of the double helix of DNA.

On the basis of published measurements of the melting transitions of synthetic polydeoxyribonucleotides with known sequences we have determined the parameters of the interplane (stacking) interactions of base pairs in DNA over the range of ionic strengths from 0.01 to 0.1 M Na+. We found that deviations of the stacking-interaction energy from the mean value of 7-8 kcal/mole were extremely small and did not exceed 0.2 kcal/mole. We report an analysis of the influence of the heterogeneity of the stacking interactions on the melting parameters of polynucleotides with random sequences (models of natural DNA's). Inclusion of this effect does not significantly distort the linear dependence of the melting temperature on the relative content of G-C pairs and insignificantly affects the width of the helix-coil transition in DNA under normal conditions. However it is the heterogeneity of the stacking interactions that plays the crucial role in the melting of DNA under conditions where the difference between the relative stabilities of the A-T and G-C pairs tends to zero, as in concentrated solutions of tetraethylammonium and tetramethylammonium salts.

Base Sequence

[Waves on the cell surface].

A new theoretical model is presented which describes dynamics of interaction between the plasmic membrane, cell cortex and cytoplasmic liquid. Analysis of the equation system describing this interaction has shown that besides the uniform solution (corresponding to a flat cell surface) there exists the stable autowave solution (corresponding to standing or running harmonic waves along the cell surface). The latter solution can be related to the experimentally observed waves moving along the cell surface.

Biophysical Phenomena

[Why is the denaturation process of super-helical DNA so uncooperative?].

A theoretical model is proposed for the helix-coil transition in circular covalently closed DNA. In the melting interval the topological constrains for such a molecule are considered to affect both the inner state of the melted regions and the spatial configuration of the whole molecule ("writhing"). A good agreement is achieved between the theoretically calculated and experimentally obtained parameters of the denaturation process. A conclusion is drawn, that at the early stages of thermodenaturation (approximately till the transition midpoint) the effect of topological constrains is realised mainly through the writhing of the molecule. The denatured regions exist in the form of relaxed loops.

DNA, Superhelical

[Transcription initiation: influence of ionic strength and actinomycin D on the kinetics of the open promoter complex formation between Escherichia coli RNA-polymerase and T7 DNA].

A membrane filter assay has been devised to study the influence of ionic strength (0--150 mM NaCl) and actinomycin D on the kinetics of the open promoter complex formation between E. coli RNA-polymerase and [3H]DNA of T7 phage. The dependence of the complex formation rate upon the ionic strength is non-monotoneus with a maximum at 75--100 mM. The addition of one actinomycin molecule per 200 base pairs decreases the open promoter complex formation rate at ionic strength less than 100 mM. A promoter site selection model including liner diffusional selection is proposed which is in a good agreement with the experimental results obtained.

DNA, Viral

[Model of epithelial morphogenesis based on elastic forces and cell contact polarization].

It is well known that in embryonic tissues at the key stages of morphogenesis there arise stable, stage--specific tension fields. These fields occur due to particular pattern of morphologically polarized cells. Some basic properties have been understood previously. 1. Morphologically polarized and isotropic shapes correspond to the alternative stable states of embryonic cells. 2. Polarization can be transmitted between the adjacent cells via intercellular contacts. 3. The tension fields at particular stage of development determine the pattern of morphogenetic movements. In this paper the physical model is suggested which interprets the selforganization of tension fields in embryonic tissues. The polarization in some region of tissue is assumed to generate the elastic tension in the surrounding cells thus restricting the propagation of cell polarization. It is shown that the properties underlined are sufficient to provide spontaneous subdivision of the cellular layer into the domains of polarized and unpolarized stretched cells. The proportion of polarized and unpolarized areas is determined and size--invariant.

Amphibians

[Physical mechanism of spatial organization in epithelial morphogenesis].

The morphogenetic movements of embryonic epithelia are preceded by their marking into motor active and passive zones. It is carried out as a result of spontaneous splitting of the epithelial layer to domains of morphologically polarized (motor active) and isotropic cells. Processes of the cellular level are dependent on the global supracellular organization. The mechanism of selforganization of macroscopic supracellular order in the course of cell polarization is analysed. A number of more elementary properties of the embryonic material inferred from the experiments proves to be sufficient for the initiation of such mechanism.

Animals

[Stability of spatially-nonhomogeneous stationary conditions of a diffuse system. Positional differentiation].

The results of general investigation presented at the previous paper [9] are applied to interpreting the spatial ordering upon positional differentiation at the development of multicellular organisms. The very form of local dynamics is not specified for the lack of sufficient information about the mechanisms of biosynthesis regulation in multicellular organisms. Instead of the dynamics of intercellular processes is supposed to provide the existence of two stable stationary states. These stable regimes are interpreted as the different specialisations of individual cell (differentiations). There are accepted the boundary conditions in the form of non-zero morphogen fluxes. The requirement of stability of the exfoliated structure at the multicellular ensemble connects some physical chemical parameters of the system (the permeability of the boundaries, characteristic time of intercellular dynamics, the diffusion coefficient of morphogen and some others) in the form of inequality. Within the framework of dynamical model the ability of morphogenetic system to the regulative development is discussed.

Cell Communication

[Nonlinear resistance in a diffuse trigger system. Biological barrier].

Mathematical model of antagonistic interrelations of biological species in which the migration is taken into account is considered. The ecological nish, occupied by one of the antagonistic species cannot be populated by the other if the initial quantity of the new species does not exceed the particular value. This is considered as the demonstration of the ecological barrier. The approach to the investigation of the nonlinear stability for spatially distributed systems can be applied to other biophysical problems.

Animals

[Kinetic determination of the non-specific constants for the binding of Escherichia coli RNA polymerase to T7 phage DNA].

The kinetics of promoter complex formation of E. coli RNA polymerase with T7 phage DNA was studied under different ionic strengths at DNA concentrations 0.15, 1.5 and 20 microns/ml. Based on the results obtained the non-specific binding constants, Keq, and the promoter complex formation rate constants, kp, were estimated. Within ionic strength range 0 + 125 mM NaCl the Keq and kp vary from 5.10(6) to 9.10(5) M-1 and from 0.8 x 0.26 x 10(9) M-1 S-1, respectively. The results are discussed from the view point of the one-dimensional diffusion sliding of the enzyme along DNA in the process of phomoter site selection.

DNA, Viral

[Spontaneous initiation of the form elements in cell layers with elastic properties].

Mechanism of spontaneous initiation of bendings in plane cellular layers is considered. The theoretical consideration is underlied by an experimentally substantiated hypothesis concerning local activation of cellular divisions in the places of future protrudings. The disturbance of the plane form of the cell layer is the result of Euler instability locally developed.

Animals

[Stability of spatially nonuniform states of diffuse systems].

The problem of stability of inhomogeneous stationary states in kinetic systems with nonlinear local dynamics and diffusion is studied. Stability criterion applicable in the case of one rate equation or two coupled rate equations with the diffusion term presented at one of them is formulated in the integral form. It is made the conclusion on the absence of stable inhomogeneous stationary states in the unicomponent system with zero fluxes at the boundaries and the case of periodic boundary conditions. In the case of non-zero fluxes at the boundaries the condition of stability of exfoliated stationary structures in the systems with bistable local dynamics is given.

Biophysical Phenomena