Biomedical subjects

B Sapoval

Publications and source records attributed to B Sapoval.

At least 19 recordsLinked to original sources

PubMed2003

Transition from Knudsen to molecular diffusion in activity of absorbing irregular interfaces.

We investigate through molecular dynamics the transition from Knudsen to molecular diffusion transport towards two-dimensional absorbing interfaces with irregular geometry. Our results indicate that the length of the active zone decreases continuously with density from the Knudsen to the molecular diffusion regime. In the limit where molecular diffusion dominates, we find that this length approaches a constant value of the order of the system size, in agreement with theoretical predictions for Laplacian transport in irregular geometries. Finally, we show that all these features can be qualitatively described in terms of a simple random-walk model of the diffusion process.

Journal Article↗

PubMed2003

Interplay between geometry and flow distribution in an airway tree.

Uniform flow distribution in a symmetric volume can be realized through a symmetric branched tree. It is shown here, however, by 3D numerical simulation of the Navier-Stokes equations, that the flow partitioning can be highly sensitive to deviations from exact symmetry if inertial effects are present. The flow asymmetry is quantified and found to depend on the Reynolds number. Moreover, for a given Reynolds number, we show that the flow distribution depends on the aspect ratio of the branching elements as well as their angular arrangement. Our results indicate that physiological variability should be severely restricted in order to ensure adequate fluid distribution through a tree.

Animals↗

PubMed2003

Diffusional screening in the human pulmonary acinus.

In the mammalian lung acini, O(2) diffuses into quasi-static air toward the alveolar membrane, where the gas exchange with blood takes place. The O(2) flux is then influenced by the O(2) diffusivity, the membrane permeability, and the acinus geometric complexity. This phenomenon has been recently studied in an abstract geometric model of the acinus, the Hilbert acinus (Sapoval B, Filoche M, and Weibel ER, Proc Natl Acad Sci USA 99: 10411, 2002). This is extended here to a more realistic geometry originated from the morphological model of Kitaoka et al. (Kitaoka K, Tamura S, and Takaki R, J Appl Physiol 88: 2260-2268, 2000). Two-dimensional numerical simulations of the steady-state diffusion equation with mixed boundary conditions are used to quantify the process. The alveolar O(2) concentration, or partial pressure, and the O(2) flux are computed and show that diffusional screening exists at rest. These results confirm that smaller acini are more efficient, as suggested for the Hilbert acini.

Algorithms↗

PubMed2002

Increased damping of irregular resonators.

It is shown that fractal drums and jagged geometry resonators may be more damped than ordinary Euclidean systems. Several damping mechanisms are examined and studied by numerical calculations. The results depend on the dissipation mechanisms but globally they increase with localization, frequency, and the irregularity of the resonator. The increased dissipation is due to the uneven spatial distribution of the vibrational amplitude in two different ways. First, it is related to the partial confinement of the vibrational modes. Secondly, increased dissipation may be due to singularities in the amplitude distribution. This is the case when a few points exist where the vibration is pinned to zero inducing local logarithmic singularities. This last effect can be spectacular: a single defect can dominate the surface damping by viscous forces of a square drum.

Journal Article↗

PubMed2001

Field theory of self-organized fractal etching.

We propose a phenomenological field theoretical approach to the chemical etching of a disordered solid. The theory is based on a recently proposed dynamical etching model. Through the introduction of a set of Langevin equations for the model evolution, we are able to map the problem into a field theory related to isotropic percolation. To the best of the author's knowledge, this constitutes the first application of field theory to a problem of chemical dynamics. By using this mapping, many of the etching process critical properties are seen to be describable in terms of the percolation renormalization group fixed point. The emerging field theory has the peculiarity of being self-organized in the sense that without any parameter fine tuning the system develops fractal properties up to a certain scale controlled solely by the volume V of the etching solution. In the limit V-->infinity the upper cutoff goes to infinity and the system becomes scale invariant. We present also a finite size scaling analysis and discuss the relation of this particular etching mechanism to gradient percolation. Finally, the possibility of considering this mechanism as a generic path to self-organized criticality is analyzed, with the characteristics of being closely related to a real physical system and therefore more directly accessible to experiments.

Journal Article↗

PubMed2000

Diffusion-reorganized aggregates: attractors in diffusion processes?

A process based on particle evaporation, diffusion, and redeposition is applied iteratively to a two-dimensional object of arbitrary shape. The evolution spontaneously transforms the object morphology, converging to branched structures. Independently of initial geometry, the structures found after a long time present fractal geometry with a fractal dimension around 1.75. The final morphology, which constantly evolves in time, can be considered as the dynamic attractor of this evaporation-diffusion-redeposition operator. The ensemble of these fractal shapes can be considered to be the dynamical equilibrium geometry of a diffusion-controlled self-transformation process.

Journal Article↗

PubMed2000

Transfer across random versus deterministic fractal interfaces.

A numerical study of the transfer across random fractal surfaces shows that their responses are very close to the response of deterministic model geometries with the same fractal dimension. The simulations of several interfaces with prefractal geometries show that, within very good approximation, the flux depends only on a few characteristic features of the interface geometry: the lower and higher cutoffs and the fractal dimension. Although the active zones are different for different geometries, the electrode responses are very nearly the same. In that sense, the fractal dimension is the essential "universal" exponent which determines the net transfer.

Journal Article↗

PubMed2000

Surface hardening and self-organized fractality through etching of random solids

When a finite volume of etching solution is in contact with a disordered solid, complex dynamics of the solid-solution interface develop. If the etchant is consumed in the chemical reaction, the dynamics stop spontaneously on a self-similar fractal surface. As only the weakest sites are corroded, the solid surface gets progressively harder and harder. At the same time, it becomes rougher and rougher uncovering the critical spatial correlations typical of percolation. From this, the chemical process reveals the latent percolation criticality hidden in any random system. Recently, a simple minimal model was introduced by Sapoval et al. to describe this phenomenon. Through analytic and numerical study, we obtain a detailed description of the process. The time evolution of the solution corroding power and of the distribution of resistance of surface sites is studied in detail. This study explains the progressive hardening of the solid surface. Finally, this dynamical model appears to belong to the universality class of gradient percolation.

Journal Article↗

PubMed1996

Fractal geometry impact on nuclear relaxation in irregular pores.

We apply a fractal description of pore surface irregularity to study the nuclear relaxation of a confined liquid. From the introduction of a length characteristic of diffusive and surface relaxing properties we describe three different relaxation regimes. These regimes show that the nuclear relaxation can be drastically modified by pore surface irregularity.

Fractals↗

PubMed1994