Biomedical subjects

Baohui Li

Publications and source records attributed to Baohui Li.

13 recordsLinked to original sources

PubMed2006

Synthesis and characterization of mesoporous ceria with hierarchical nanoarchitecture controlled by amino acids.

In this work, we report the synthesis and characterization of mesoporous ceria with hierarchical nanoarchitectures controlled by amino acids. During the synthesis procedure, cerium oxalate precipitate was treated hydrothermally with different amino acids as crystallization modifiers, and hierarchically structured cerium oxalate precursors were obtained. Ceria can be produced after thermal decomposition of the cerium oxalate precursors. Structure and properties of the product were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), Raman spectroscopy, N2 adsorption analysis, and X-ray photoelectron spectroscopy (XPS) methods. The results indicate that the mesoporous ceria with hierarchical nanoarchitectures are composed of nanosized ceria crystallites as building units and possess high surface area and high concentration of oxygen vacancy. Depending on different amino acids as the crystallization modifiers, the ceria exhibit different morphologies, such as dendritic aggregation of rods, dumbbells of nanorod arrays, or aggregated spheres. It is proposed that both the type of functional side groups and the length of the side groups of the amino acids influence the morphologies of the ceria. Meanwhile, the solvent and hydrothermal treatment temperatures also play important roles in the morphological control. The method reported in this work would be regarded as a general way to fabricate mesoporous metal oxides with hierarchical nanoarchitectures.

Amino Acids↗

PubMed2006

Simulated annealing study of asymmetric diblock copolymer thin films.

We report a simulated annealing study of the morphology of asymmetric diblock copolymer thin films confined between two homogeneous and identical surfaces. We have focused on copolymers that form a gyroidal morphology in the bulk. The morphological dependence of the confined films on the film thickness and the surface-polymer interaction has been systematically investigated. From the simulations it is found that much richer morphologies can form for the gyroid-forming asymmetric diblock copolymer thin films, in contrast to the lamella-forming symmetric and cylinder-forming asymmetric diblock copolymer films. Multiple morphological transitions induced by changing the film thickness and polymer-surface interactions are observed.

Journal Article↗

PubMed2006

Confinement-induced novel morphologies of block copolymers.

Self-assembly of block copolymers confined in cylindrical nanopores is studied systematically using a simulated annealing technique. For diblock copolymers which form two-dimensional hexagonally packed cylinders with period L0 in the bulk, novel structures such as helices and stacked toroids spontaneously form inside the cylindrical pores. These confinement-induced morphologies have no counterpart in the bulk system and they depend on the pore diameter (D) and the surface-polymer interactions, reflecting the importance of structural frustration and interfacial interactions. On tightening the degree of confinement, transitions from helices to toroids to spheres are observed. Mechanisms of the morphological transitions can be understood based on the degree of structural frustration parametrized by the ratio D/L0.

Journal Article↗

PubMed2005

Simulated annealing study of gyroid formation in diblock copolymer solutions.

Conditions for the formation of gyroid structures in diblock copolymer solutions are examined using a simulated annealing technique. The simulations were performed on diblock copolymer systems of A(NA)-b-B(NB) (with NA<NB) in solvents that are selective to the A blocks. It is shown that gyroid structures form in a narrow range of block copolymer concentrations between the hexagonally packed cylindrical and the lamellar phases and at an almost constant B-monomer concentration. It is also shown that the gyroid structure is especially sensitive to the B-solvent interaction (epsilonBS) and the length of the B block (NB). Phase diagrams for the diblock copolymer solutions are constructed. These predicted results are consistent with previous experimental observations. The three-dimensional isosurface contour plots of the simulated gyroid structure shows two interpenetrating strut networks. The projection along the [111] direction of the simulated gyroid structure and the spherically averaged structure factor are in good agreement with previous experimental results.

Journal Article↗

PubMed2005

Cylinder-gyroid-lamella transitions in diblock copolymer solutions: a simulated annealing study.

The morphological transition of an asymmetric diblock copolymer [A3-b-B9] in A-selective solvents is investigated using a simulated annealing technique. The study was carried out at high copolymer concentrations. Phase-transitions among hexagonally packed cylinders (C), gyroid (G), and lamellae (L) are observed. The phase transition sequence, C-->G-->L, was obtained with decreasing copolymer concentration and/or increasing B-solvent interaction. The predicted phase-transition sequence is consistent with experiments of diblock copolymers with similar volume fractions in selective solvents of different selectivity. The morphological transitions were further analyzed in terms of the average contact numbers for A or B monomers with other molecules and the total surface area of the core or matrix in each structure. It is found that these quantities correlate with the structures, providing an understanding of the phase-transition mechanisms.

Journal Article↗

PubMed2005

Relationships between genomic, cell cycle, and mutagenic responses of TK6 cells exposed to DNA damaging chemicals.

Genotoxic stress causes a variety of cellular and molecular responses in mammalian cells, including cell cycle arrest, DNA repair, and apoptosis. These responses result from the interplay between the genotoxic events themselves, and the biological context in which they occur. To better understand this interplay, we investigated cytotoxicty, mutagenesis, cell cycle profile, and global gene expression in the human TK6 lymphoblastoid cell line exposed to six genotoxicants. The six compounds have broad structural diversity and cause genotoxic stress by many different mechanisms, including covalent modification (methyl methanesulfonate, mitomycin C), reactive oxygen species (hydrogen peroxide, bleomycin), and topoisomerase II inhibition (etoposide and doxorubicin). Cell cycle analysis was performed 4 and 20 h following a 4 h chemical exposure. Cells exposed to all compounds experienced S-phase arrest at the 8h time point, but by 24 h had markedly different cell cycle responses. Cells exposed to compounds that cause covalent modification had a strong G2/M arrest at 24 h. These cells also had a robust (>25-fold) increase in mutant frequency, and had a moderate but sustained p53 response at 4, 8, and 24h, detectable as approximately 2-5-fold increases in transcript levels for p21WAF1/CIP1, GADD45alpha, BTG2, and cyclin G1. In contrast, cells exposed to the reactive oxygen compounds had little or no G2/M arrest at 24 h and no increase in mutant frequency. In addition, these compounds caused a strong but transient induction of the p53 pathway, detectable as 15-25-fold increases in p21WAF1/CIP1 transcription at 4 h that decreased dramatically by 8h and was near control levels at 24 h. Thus, the mutagenic effect of compounds was consistent with G2/M arrest and sustained kinetics of p53 pathway activation. Global gene expression data were also consistent with the mutagenesis data. Activation of genes associated with cell cycle arrest, the p53 and TNF-related pathways, and chemokines and chemokine receptors, were particularly evident for the reactive oxygen compounds. In contrast, the most mutagenic compounds caused fewer and less robust changes in global gene expression. There was therefore an inverse relationship between global gene expression and mutagenic potency.

Cell Cycle↗

PubMed2005

Simulated annealing study of morphological transitions of diblock copolymers in solution.

The simulated annealing method was applied to study the self-assembling process of diblock copolymers in selective solvents for one block. The simulation results illustrated that the morphologies of the copolymer aggregates strongly depend on the interactions between the core-forming blocks and the solvents and on the length of the corona-forming blocks. Multiple morphological transitions were observed in one system. The transition sequence (disordered state-spherical micelles-short rodlike micelles-long rodlike micelles-onionlike aggregates) was observed for copolymers with increasing core-solvent interaction. Similar transitions were observed with the decrease of the length of the corona-forming blocks. The mechanisms of these transitions are investigated. The simulation results are compared with experiments and other simulations.

Journal Article↗

PubMed2004

Simulated annealing study of diblock copolymer thin films confined between two homogeneous surfaces.

Thin films of symmetric diblock copolymers confined between two parallel surfaces have been systematically investigated by means of simulated annealing on a simple cubic lattice. The study was carried out for systems with different film thicknesses and surface-polymer interactions. Very regular equilibrium morphologies of lamella are formed in almost all cases. The dependence of lamellar orientations, total energy, chain-conformation entropy, and free energy of the confined films on the film thickness and the strength of surface-polymer interactions has been studied systematically. The influence of packing frustration on morphology is observed and the mechanisms of lamellar orientations are investigated.

Journal Article↗

PubMed2004

Comparison of gene expression changes induced in mouse and human cells treated with direct-acting mutagens.

Exposure to DNA-damaging agents can elicit a variety of stress-related responses that may alter the gene expression of numerous biological pathways. We used Affymetrix microarrays to detect gene expression changes in mouse lymphoma (L5178Y) and human lymphoblastoid (TK6) cells in response to methyl methanesulfonate (MMS; a prototypical alkylating agent) and bleomycin (a prototypical oxidative mutagen). Cells were treated for 4 hr, and RNA was isolated either at the end of the treatment or after a 20-hr recovery period. Two concentrations of each agent were used based on cytotoxicity levels and Tk mutant frequencies. Our microarray data analysis indicated that MMS and bleomycin gene expression responses were considerably different in mouse cells versus human cells. The results also suggested that more comprehensive cellular responses to MMS and bleomycin occurred in TK6 cells than in L5178Y cells. In contrast to L5178Y cells, the response of TK6 cells to MMS and bleomycin was characterized by the induction of p53-dependent genes that are involved in DNA repair, cell cycle regulation, and apoptosis. It appears that the induction of DNA damage by MMS in human TK6 cells mediated cytotoxicity and led to decreased cell survival. This may explain the greater sensitivity of TK6 cells to cytotoxic effects of MMS compared to L5178Y cells. Bleomycin exerted comparable cytotoxic effects in the two cell lines. Overall, these studies were unable to identify distinctive gene expression changes that differentiated bleomycin from MMS in either TK6 cells or mouse lymphoma cells.

Alkylating Agents↗

PubMed2004

Genotyping with TaqMAMA.

TaqMAMA combines the quantitative strengths of TaqMan with the allele-specific PCR of MAMA. In this article we develop TaqMAMA as a technique for screening human DNA samples for known genetic polymorphisms. In the first set of experiments, plasmids that model all types of genetic polymorphisms were used to understand the relationship between TaqMAMA primer/template mismatches and their strength of allelic discrimination. These data can be used to improve allelic discrimination of other primer extension genotyping methodologies through directed use of nucleotide mismatches. We used the data to derive a guide for TaqMAMA primer design and DNA strand selection for TaqMAMA genotyping assays. The guide was then used to develop assays for 11 known and novel human genetic polymorphisms. Genotypes were assigned quickly and accurately in all cases. TaqMAMA genotyping assays require minimal development time, have a high probability of success, produce reliable data that are straightforward to analyze, and are very cost-competitive.

Alleles↗

PubMed2003

Direct detection of deletion mutations in the yeast DEL assay using quantitative PCR (TaqMan).

Established mutagenesis assays measure mutant frequencies at selectable loci. These assays work by encouraging the growth of mutants to form visible colonies while suppressing the growth of non-mutants. An alternative strategy is to detect DNA alterations directly. We present an example of this latter strategy using TaqMan to quantify deletion mutants in mixed cultures of Saccharomyces cerevisiae strain RS112. The RS112 strain contains two heteroallelic his3 sequences that share approximately 400bp homology and are separated by approximately 7 kb of plasmid DNA. Spontaneous and chemical-induced strand breaks that occur in this region are repaired by intrachromosomal recombination, resulting in the loss of the plasmid DNA and creation of a His prototroph. Ordinarily, these prototrophs are detected by growth on His- medium over 2-3 days. In this case, we used TaqMan to selectively detect the DNA of deletion mutants in the presence of a large excess of DNA from non-mutants. This was accomplished using primers whose annealing sites were outside the region of DNA lost due to recombination. Thus, the primers were too far apart to produce PCR products using DNA from non-mutants, but produced a robust TaqMan signal using DNA from deletion mutants. Spontaneous and chemical-induced recombination frequencies (RF) were measured in a series of time-course and dose-response experiments with direct-acting mutagens. Interestingly, chemical-induced increases in RF were observed within a few hours of initiation of exposure, demonstrating that deletion mutations in RS112 can be fixed soon after DNA damage occurs. The ability to measure RF at any time during treatment will be useful for additional mechanistic studies. Chemical-induced increases in RF were also observed in the absence of selective growth conditions. As such, detection of deletion mutations with TaqMan may be applicable to measurements of RFs at non-selectable loci in yeast and other species. Finally, chemical-induced RFs after 17 h exposure were similar to those observed after 3 days growth on selective medium. The TaqMan assay may therefore be used to screen compounds more quickly for their ability to cause deletion mutations than is currently done by plating on selective medium.

Base Sequence↗

PubMed2002

Investigation of the chemico-physical characteristics of the active components in the Chinese herb Gastrodia elata Bl. by capillary zone electrophoresis.

A CE method for investigating the chemico-physical characteristics of the active components of low molecular weight in Gastrodia elata Bl. is described. First, the dissociation constants of five active components were determined based on the relation between the effective mobility of the solutes and the buffer pH value. Second, an equation that describes the relation of the migration time and the molecular weight was developed and used to predict the migration order and to calculate the electroosmotic velocity. The results predicted by theory agreed well with that from experiments.

Chemistry, Physical↗

PubMedDate not supplied

TaqMan applications in genetic and molecular toxicology.

Quantification of nucleic acids has become a common procedure in many toxicology laboratories. Among the technologies that accomplish this is the fluorogenic 5'-nuclease assay, commonly known as TaqMan. Three TaqMan applications for genetic and molecular toxicology are presented in this article: quantification of gene expression, detection of genetic polymorphisms, and quantification of chromosomal DNA deletions. Of these, quantification of gene expression is the most widely used, and established TaqMan as a benchmark technology for nucleic acid quantification. Two additional applications, polymorphism detection and quantification of DNA deletions, demonstrate the flexibility and quantitative strengths that make TaqMan so powerful, including high precision, excellent sensitivity, and broad linear dynamic range. These and similar applications improve our ability to investigate genetic and molecular dimensions of toxicological phenomena, and have promoted the widespread use of TaqMan in toxicology departments in the pharmaceutical industry. In addition to presenting these applications, the authors discuss some of the challenges of integrating TaqMan and other new technologies into the drug development process.

Animals↗