PubMed Health⌕ Search

Biomedical subjects

Barbara J Garrison

Publications and source records attributed to Barbara J Garrison.

9 recordsLinked to original sources
PubMed2007

Effect of cluster size in kiloelectronvolt cluster bombardment of solid benzene.

Emission of benzene molecules by 5-keV cluster bombardment of a range of carbon projectiles from C6H6 to C180 is studied by a coarse-grained molecular dynamics (MD) technique. This approach permits calculations that are not feasible using more complicated potential energy functions, particularly as the interesting physics associated with the ion impact event approaches the mesoscale. These calculations show that the highest ejection yields are associated with clusters that deposit their incident energy 15-20 A below the surface. The highest yield for the projectiles is produced by the C20 and C60 projectiles. The results from the MD simulations are also compared favorably to an analytical model based on fluid dynamics to describe the energy deposition. The analytical model is then utilized to extend the range of the calculations to higher incident energies. The issue of the relative amount of chemical fragmentation and intact molecular desorption is also examined for the benzene crystal. These results show that damage accumulation at high-incident fluence should not be problematic and that it should be possible to perform molecular depth profiling via secondary ion mass spectrometry experiments. In general, the approach presented here illustrates the power of combining a simplified MD method with analytical strategies for describing a length scale that is difficult to achieve with traditional MD calculations.

Benzene↗
PubMed2006

Mesoscale energy deposition footprint model for kiloelectronvolt cluster bombardment of solids.

Molecular dynamics simulations have been performed to model 5-keV C60 and Au3 projectile bombardment of an amorphous water substrate. The goal is to obtain detailed insights into the dynamics of motion in order to develop a straightforward and less computationally demanding model of the process of ejection. The molecular dynamics results provide the basis for the mesoscale energy deposition footprint model. This model provides a method for predicting relative yields based on information from less than 1 ps of simulation time.

Journal Article↗
PubMed2006

Surface sensitivity in cluster-ion-induced sputtering.

The ion beam-induced removal of thin water ice films condensed onto Ag and bombarded by energetic Au, Au2, Au3, and C60 projectiles is examined both experimentally and with molecular dynamics computer simulations. For water overlayers of thicknesses greater than 10 A, the yields of sputtered Ag+ secondary ions decay exponentially with increasing ice thickness, revealing characteristic decay lengths of 24, 20, 18, and 7.0 A, respectively. It is shown that these values manifest the characteristic depths of projectile energy loss, rather than escape depths of the sputtered Ag atoms through the water ice overlayer. Computer simulations show that the mechanism of ejection involves the sweeping away of overlayer water molecules, allowing for an unimpeded escape of ejected Ag atoms. The relevance of these data with respect to surface sensitivity in secondary ion mass spectrometry is discussed.

Computer Simulation↗
PubMed2005

Coarse-grained model of the interaction of light with polymeric material: onset of ablation.

A coarse-grained model has been developed for molecular dynamics simulations of the interaction of light with polymeric materials. The photon energy can result in a vibrational excitation (photothermal process) or disruption of a chemical bond (photochemical process) in a polymer. In the latter case, the formation of active radial sites and the occurrence of chemical reactions have to be taken into consideration. The novel feature of this model is the incorporation of chemical reactions into the united atom approximate representation of the polymer structure, which permits the study of laser ablation, degradation, or the effect of various chemical reactions on large time and length scales. The chemical reactions are included in the model in a probabilistic manner as in the kinetic Monte Carlo method. This model adopts physically and experimentally known quantities such as enthalpies and probabilities of reactions. Properties such as laser irradiation time, laser fluence, and wavelength are explicitly included. Moreover, no chemically correct interaction potential is required to incorporate the effects of chemical reactions on the dynamics of the system after energy deposition. We find that the model provides a plausible description of the essential processes. The laser-induced pressure relaxation is the main mechanism responsible for the onset of polymer ablation. Since the pressure relaxation processes are slow, there is a delay in the onset of ablation after the end of the laser pulse as is observed experimentally. The vaporization processes are not efficient for material removal, and the effect is minimal for both photochemical and photothermal processes. A lower fluence is needed for the onset of ablation with photochemical processes than photothermal processes.

Light↗
PubMed2005

Microscopic insights into the sputtering of thin organic films on Ag{111} induced by C60 and Ga bombardment.

Molecular dynamics computer simulations have been employed to model the bombardment of Ag{111} covered with three layers of C6H6 by 15 keV Ga and C60 projectiles. The study is aimed toward examining the mechanism by which molecules are desorbed from surfaces by energetic cluster ion beams and toward elucidating the differences between cluster bombardment and atom bombardment. The results show that the impact of the cluster on the benzene-covered surface leads to molecular desorption during the formation of a mesoscopic scale impact crater via a catapulting mechanism. Because of the high yield of C6H6 with both Ga and C60, the yield enhancement is observed to be consistent with related experimental observations. Specific energy and angle distributions are shown to be associated with the catapult mechanism.

Journal Article↗
PubMed2005

Collision-induced dissociation of water into ions.

A modification of the central force model (CFM) that describes the dissociation of water molecules into OH- and H+ ions is proposed for molecular dynamics simulations of energetic particle bombardment of water ice. The model keeps all the properties of the CFM but permits charge exchange between oxygen and hydrogen atoms when the water molecule starts to dissociate after collision with an energetic projectile. The reaction products, therefore, have the correct integer charges, -1 and +1 for hydroxyl and a proton. The threshold for the ionic dissociation is corrected to be at the right value, 17.2 eV, in a vacuum. Using the proposed model, total cross-sections for ionic dissociation as functions of the projectile energy are estimated for Ar and C projectiles colliding with water molecules in a vacuum and water ice. Carbon projectiles are demonstrated to produce more dissociated ions at energies lower than 300 eV. Argon projectiles are more effective in breaking the molecules at higher energies.

Journal Article↗
PubMed2003

Limit of overheating and the threshold behavior in laser ablation.

Constant temperature and pressure molecular-dynamics simulations in conjunction with constant pressure and enthalpy simulations, designed to examine the threshold behavior in laser ablation, demonstrate that the rate of homogeneous nucleation (explosive boiling) increases sharply in a very narrow temperature range at approximately 90% of the critical temperature. Moreover, the homogeneous nucleation is sufficiently rapid to prevent the superheated liquid from entering the spinodal region at densities greater than the critical density.

Journal Article↗
PubMed2003

Enhancement of sputtering yields due to C60 versus Ga bombardment of Ag[111] as explored by molecular dynamics simulations.

The mechanism of enhanced desorption initiated by 15-keV C60 cluster ion bombardment of a Ag single crystal surface is examined using molecular dynamics computer simulations. The size of the model microcrystallite of 165,000 atoms and the sophistication of the interaction potential function yields data that should be directly comparable with experiment. The C60 model was chosen since this source is now being used in secondary ion mass spectrometry experiments in many laboratories. The results show that a crater is formed on the Ag surface that is approximately 10 nm in diameter, a result very similar to that found for Au3 bombardment of Au. The yield of Ag atoms is approximately 16 times larger than for corresponding atomic bombardment with 15-keV Ga atoms, and the yield of Ag3 is enhanced by a factor of 35. The essential mechanistic reasons for these differences is that the C60 kinetic energy is deposited closer to the surface, with the deeply penetrating energy propagation occurring via a nondestructive pressure wave. The numbers predicted by the model are testable by experiment, and the approach is extendable to include the study of organic overlayers on metals, a situation of growing importance to the SIMS community.

Journal Article↗