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Ben Koopman

Publications and source records attributed to Ben Koopman.

5 recordsLinked to original sources

Effect of carbon substrate on electron acceptor diauxic lag and anoxic maximum specific growth rate in species with and without periplasmic enzyme.

The effect of oxidation state of carbon substrate on the diauxic lag of facultative anaerobic denitrifying bacteria growing aerobically upon switching to anoxic growth was studied. Also studied was the effect on the anoxic maximum specific growth rate. Two pure bacteria cultures were used, Paracoccus pantotrophus, denitrifying bacteria containing a periplasmic nitrate reductase (Nap), and Pseudomonas denitrificans, denitrifying bacteria lacking the periplasmic nitrate reductase. The anoxic maximum specific growth rate of both cultures following a period of aerobic growth with identical dilution up to steady-state was indeed affected by the oxidation state of the carbon, with the most oxidized substrate yielding the highest anoxic maximum specific growth rate. The diauxic lags for Paracoccus pantotrophus were considerably shorter than those for Pseudomonas denitrificans, something expected due to the presence of Nap, an enzyme not affected by aerobiosis. Since the activity of Nap in Paracoccus pantotrophus under aerobic conditions has been shown to increase with the extent of reduction of the carbon substrate, it was also expected that the diauxic lag length for these bacteria would decrease as the reduction state of the carbon substrate increased. This could not be demonstrated, as no significant lags were observed for this species. Pseudomonas denitrificans exhibited a shorter diauxic lag with the more oxidized carbon source.

Aerobiosis↗

Enhancement of titanium dioxide photocatalysis by water-soluble fullerenes.

Fullerenes are known for their unique electronic properties including high electron affinity. Although use of fullerenes for scavenging photo-generated electrons from titanium dioxide particles has been demonstrated, no attempts have been made to utilize the unique properties of fullerenes to increase the efficacy of photocatalysis. The present study has demonstrated that a mixture of water-soluble polyhydroxy fullerenes (PHF) and titanium dioxide (anatase polymorph) enhances photocatalytic degradation of organic dye. The PHF molecules adsorbed to the surface of titanium dioxide due to electrostatic forces, with adsorption density being higher at lower pH values. The surface coverage of titanium dioxide nanoparticles by PHF molecules determined the extent of enhancement, with an optimum dosed weight ratio of PHF to titanium dioxide at 0.001. Hydroxylation and concomitant solubilization of fullerenes allow their unique electronic properties to be harnessed for photocatalysis.

Adsorption↗

Structured model for denitrifier diauxic growth.

We present a model for diauxic growth of denitrifying bacteria in which nitrate reductase synthesis kinetics dominate the overall growth kinetics. The model is based on the assumption of the existence of a nitrate respiration operon, thereby linking the rate of nitrate uptake to the activity of nitrate reductase. We show that this approach can model diauxic growth of Pseudomonas denitrificans by conducting experiments in which nitrate reductase activity was measured during both lag and ensuing exponential growth phases. We consistently observed the pattern of low nitrate reductase enzyme activity during the lag phase, increasing before the onset of growth. By fitting model parameters we were able to successfully match experimental data for growth, nitrate uptake, and enzyme activity level.

Models, Biological↗

A simple model for diauxic growth of denitrifying bacteria.

A simple model has been formulated to simulate diauxic growth of denitrifying bacteria. It is capable of fitting the experimental results of batch growth experiments with Pseudomonas denitrificans under various conditions. It successfully predicts the observed lags when a pure culture of this bacterium switches from oxygen to nitrate as terminal electron acceptor. The model includes the effect of carbon substrate limitation and length of aerobic phase and does not run into problems when switching from anoxic to aerobic conditions, unlike prior models of diauxic growth.

Aerobiosis↗

Nitrite inhibition of aerobic growth of Acinetobacter sp.

Nitrite inhibition of Acinetobacter sp. growing under aerobic conditions was studied. Specific growth rates under non-limiting concentrations of acetate and dissolved oxygen averaged 0.62h(-1). Growth and phosphate uptake by Acinetobacter sp. were both inhibited by increasing nitrite concentrations. The median inhibitory concentration (IC50) of free nitrous acid (FNA) was 0.10 mg/L and the IC10 of FNA was 0.05 mg/L. Removing nitrite from cultures reversed the inhibitory effect. Comparison of the IC10 of FNA for Acinetobacter sp. to inhibitory concentrations for other wastewater heterotrophic bacteria suggests that Acinetobacter sp. are relatively sensitive to this compound.

Acinetobacter↗