Biomedical subjects

Bong June Sung

Publications and source records attributed to Bong June Sung.

7 recordsLinked to original sources

PubMed2006

Dynamics of probes in model glassy matrices.

The dynamics of diatomic probe molecules in matrices composed of hard spheres are studied using molecular dynamics simulations. The matrix particles are connected to fixed attachment points by strings of length, l, which is varied from l-->infinity (fluid) to 0 ("glass"). The probe diffusion coefficient, D interpolates smoothly between these limits when l is changed. As l is decreased, D displays a transition from a power-law l dependence, which is well fit by the mode-coupling theory expression, to an Arrhenius l dependence. Single particle analysis shows that the hopping motion sets in for l much larger than a critical length, l(c), and Arrhenius behavior occurs when hopping becomes the dominant mode of transport. The system displays dynamic heterogeneity even though there is no growing dynamic correlation length of any kind.

Computer Simulation↗

PubMed2006

Lateral diffusion and percolation in membranes.

An algorithm based on Voronoi tessellation and percolation theory is presented to study the diffusion of model membrane components (solutes) in the plasma membrane. The membrane is modeled as a two-dimensional space with integral membrane proteins as static obstacles. The Voronoi diagram consists of vertices, which are equidistant from three matrix obstacles, joined by edges. An edge between two vertices is said to be connected if solute particles can pass directly between the two regions. The percolation threshold, pc, determined using this passage criterion is pc approximately equal to 0.53. This is smaller than if the connectivity of edges were assigned randomly, in which case the percolation threshold pr=2/3, where p is the fraction of connected edges. Molecular dynamics simulations show that diffusion is determined by percolation of clusters of edges.

Algorithms↗

PubMed2005

Integral equation theory of randomly coupled multiblock copolymer melts: effect of block size on the phase behavior.

The phase behavior of randomly coupled multiblock copolymer melts is studied using the polymer reference interaction site model integral equation theory. The molecules are modeled as flexible chains with random sequences of two types of blocks, each of which consists of the same number (R) of monomer beads. In the random copolymer (R=1) limit the theory predicts macrophase separation as the temperature is decreased for all values of the monomer correlation length lambda. For R>2, however, the theory predicts a microphase separation for values of lambda less than some critical value which increases as the block size increases.

Journal Article↗

PubMed2005

Molecular-dynamics simulations for nonclassical kinetics of diffusion-controlled bimolecular reactions.

Molecular-dynamics simulations are presented for the diffusion-controlled bimolecular reaction A+B<==>C in two and three dimensions. The reactants and solvent molecules are modeled as spheres interacting via continuous potential-energy functions. The interaction potential between two reactants contains a deep well that results in a reaction. When the solvent concentration is low and the reactant dynamics is essentially ballistic, the system reaches equilibrium rapidly, and the reaction follows classical kinetics with exponential decay to the equilibrium. When the solvent concentration is high the particles enter the normal diffusion regime quickly and nonclassical behavior is observed, i.e., the reactant concentrations approach equilibrium as t(-d/2) where d is the dimensionality of space. When the reaction well depth is large, however, the reaction becomes irreversible within the simulation time. In this case the reactant concentrations decay as t(-d/4). Interestingly this behavior is also observed at intermediate times for reversible reactions.

Journal Article↗

PubMed2005

Monte Carlo simulation and self-consistent integral equation theory for polymers in quenched random media.

The conformational properties and static structure of freely jointed hard-sphere chains in matrices composed of stationary hard spheres are studied using Monte Carlo simulations and integral equation theory. The simulations show that the chain size is a nonmonotonic function of the matrix density when the matrix spheres are the same size as the monomers. When the matrix spheres are of the order of the chain size the chain size decreases monotonically with increasing matrix volume fraction. The simulations are used to test the replica-symmetric polymer reference interaction site model (RSP) integral equation theory. When the simulation results for the intramolecular correlation functions are input into the theory, the agreement between theoretical predictions and simulation results for the pair-correlation functions is quantitative only at the highest fluid volume fractions and for small matrix sphere sizes. The RSP theory is also implemented in a self-consistent fashion, i.e., the intramolecular and intermolecular correlation functions are calculated self-consistently by combining a field theory with the integral equations. The theory captures qualitative trends observed in the simulations, such as the nonmonotonic dependence of the chain size on media fraction.

Journal Article↗

PubMed2005

Integral equation theory of random copolymer melts: self-consistent treatment of intramolecular and intermolecular correlations.

A self-consistent integral equation theory is presented for the conformational properties and spinodal lines of random copolymer melts. The theory combines field-theoretic methods with the polymer reference interaction site model (PRISM) theory. The many-chain problem is replaced by a single chain where the sites interact via a bare plus a self-consistently determined medium-induced potential, and the conformational properties are obtained using a variational method. The theoretical prediction for the spinodal line is qualitatively similar to that of non-self-consistent PRISM theory. The theory predicts macroscopic phase separation for all values of the monomer correlation strength, lambda. The inverse spinodal temperature is a nonmonotonic function of lambda with a maximum at lambda(max). For large values of lambda( approximately 1), the values of spinodal temperatures are almost identical to those of non-self-consistent PRISM theory. For low values of lambda, however, the theory predicts higher values for spinodal temperatures than non-self-consistent PRISM theory. The theory predicts significant changes in the mean-square end-to-end distance as the temperature is decreased.

Journal Article↗

PubMed2005

Integral equation theory for two-dimensional polymer melts.

The polymer reference interaction site model theory is investigated for two-dimensional polymer melts composed of freely-jointed hard disk chains and tangent-disk rods. Exact results for the intramolecular pair correlation functions are input into the theory, and predictions of the theory for the intermolecular pair correlation functions are tested via comparison with simulation. The theory is not as accurate for this system as it is for three-dimensional polymer melts, and the quantitative predictions are not good except at the highest area fractions. Possible reasons for the deficiency in the theory are discussed.

Journal Article↗