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C A Atkins

Publications and source records attributed to C A Atkins.

11 recordsLinked to original sources
PubMed2000

A simplified approach for modeling diffusion into cells.

Regulation of the intracellular concentration of substrates is essential for the maintenance of a stable cellular environment. Diffusion and reaction processes supply and consume substrates within cells and determine their steady-state concentrations. To realistically represent these processes by computer simulation they must be modeled in three dimensions. Yet three-dimensional models are inherently computing intensive. This study describes a method, which substantially simplifies the modeling of diffusion into a polyhedral body (a cube), that was used as a model representation of a cell. The method is applied to a case study of oxygen diffusion into nitrogen-fixing, rhizobia-infected cells in legume nodules. The method involved generating a one-dimensional representation of the three-dimensional problem to provide a "surface area profile" of three-dimensional diffusion. The one-dimensional models were significantly easier to program, several orders of magnitude faster to solve and in this study were validated by assessing their results against those of comparable three-dimensional models of diffusion into the same body. The results show the one-dimensional method to be a close approximation of a three-dimensional source-sink problem with systematic differences below 10% for fractional oxygenation of leghemoglobin, cell respiration and nitrogenase activity. Larger differences between models (up to 45%) in the predicted average and innermost O(2)concentrations had no effects on the physiological conclusions of the study, but were attributed to the poorer resolution of the three- than the one-dimensional model, and to an inherent simplification in the derivation of the one-dimensional surface area profiles. The one-dimensional modeling approach was found to be a simple, yet powerful tool for the study of diffusion and reaction in biological systems.

Cell Membrane Permeability↗
PubMed2000

The forms and sources of cytokinins in developing white lupine seeds and fruits.

A comprehensive range of cytokinins (CK) was identified and quantified by gas chromatography-mass spectrometry in tissues of and in xylem and phloem serving developing white lupine (Lupinus albus) fruits. Analyses were initiated at anthesis and included stages of podset, embryogenesis, and seed filling up to physiological maturation 77 d post anthesis (DPA). In the first 10 DPA, fertilized ovaries destined to set pods accumulated CK. The proportion of cis-CK:trans-CK isomers was initially 10:1 but declined to less than 1:1. In ovaries destined to abort, the ratio of cis-isomers to trans-isomers remained high. During early podset, accumulation of CK (30-40 pmol ovary(-1)) was accounted for by xylem and phloem translocation, both containing more than 90% cis-isomers. During embryogenesis and early seed filling (40-46 DPA), translocation accounted for 1% to 14% of the increases of CK in endosperm (20 nmol fruit(-1)) and seed coat (15 nmol fruit(-1)), indicating synthesis in situ. High CK concentrations in seeds (0.6 micromol g(-1) fresh weight) were transient, declining rapidly to less than 1% of maximum levels by physiological maturity. These data pose new questions about the localization and timing of CK synthesis, the significance of translocation, and the role(s) of CK forms in reproductive development.

Cytokinins↗
PubMed1998

AIR synthetase in cowpea nodules: a single gene product targeted to two organelles?

A cDNA (VUpur5) encoding phosphoribosyl aminoimidazole (AIR) synthetase, the fifth enzyme of the de novo purine biosynthesis pathway has been isolated from a cowpea nodule cDNA library. It encodes a 388 amino acid protein with a predicted molecular mass of 40.4 kDa. The deduced amino acid sequence has significant homology with AIR synthetase from other organisms. AIR synthetase is present in both mitochondria and plastids of cowpea nodules. A signal sequence encoded by the VUpur5 cDNA has properties associated with plastid transit sequences but there is no consensus cleavage site as would be expected for a plastid targeted protein. Although the signal sequence does not have the structural features of a mitochondrial targeted protein, it has a mitochondrial cleavage site motif (RX/XS) close to the predicted N-terminus of the mature protein. Southern analysis suggests that AIR synthetase is encoded by a single gene raising questions as to how the product of this gene is targeted to the two organelles. VUpur5 is expressed at much higher levels in nodules compared to other cowpea tissues and the gene is active before nitrogen fixation begins. These results suggest that products of nitrogen fixation do not play a role in the initial induction of gene expression. VUpur5 was expressed in Escherichia coli and the recombinant protein used to raise antibodies. These antibodies recognize two forms of AIR synthetase which differ in molecular size. Both forms are present in mitochondria, although the larger protein is more abundant. Only the smaller protein was detected in plastids.

Amino Acid Sequence↗
PubMed1985

Purification and properties of inosine monophosphate oxidoreductase from nitrogen-fixing nodules of cowpea (Vigna unguiculata L. Walp).

Using ammonium sulfate precipitation, gel filtration, and affinity chromatography, inosine monophosphate (IMP) oxidoreductase (EC 1.2.1.14) was isolated from the soluble proteins of the plant cell fraction of nitrogen-fixing nodules of cowpea (Vigna unguiculata L. Walp). The enzyme, purified more than 140-fold with a yield of 11%, was stabilized with glycerol and required a sulfydryl-reducing agent for maximum activity. Gel filtration indicated a molecular weight of 200,000, and sodium dodecyl sulfate-gel electrophoresis a single subunit of 50,000 Da. The final specific activity ranged from 1.1 to 1.5 mumol min-1 mg protein-1. The enzyme had an alkaline pH optimum and showed a high affinity for IMP (Km = 9.1 X 10(-6) M at pH 8.8 and NAD levels above 0.25 mM) and NAD (Km = 18-35 X 10(-6) M at pH 8.8). NAD was the preferred coenzyme, with NADP reduction less than 10% of that with NAD, while molecular oxygen did not serve as an electron acceptor. Intermediates of ureide metabolism (allantoin, allantoic acid, uric acid, inosine, xanthosine, and XMP) did not affect the enzyme, while AMP, GMP, and NADH were inhibitors. GMP inhibition was competitive with a Ki = 60 X 10(-6) M. The purified enzyme was activated by K+ (Km = 1.6 X 10(-3) M) but not by NH+4. The K+ activation was competitively inhibited by Mg2+. The significance of the properties of IMP oxidoreductase for regulation of ureide biosynthesis in legume root nodules is discussed.

Binding, Competitive↗
PubMed1983

Cellular and subcellular organization of pathways of ammonia assimilation and ureide synthesis in nodules of cowpea (Vigna unguiculata L. Walp.).

Fractionation of cell organelles of nitrogen-fixing nodules of cowpea (Vigna unguiculata L. Walp) by discontinuous and continuous sucrose density centrifugation indicated that starch-containing plastids possessed the complete pathway for purine nucleotide synthesis together with significant activities of some other enzymes associated with the provision of substrates in purine synthesis; triosephosphate isomerase (EC 5.3.1.1), NADH-glutamate synthase (EC 2.6.1.53), aspartate aminotransferase (EC 2.6.1.1), phosphoglycerate oxidoreductase (EC 1.1.1.95), and methylene tetrahydrofolate oxidoreductase (EC 1.5.1.5). Enzymes of purine oxidation, xanthine oxidoreductase (EC 1.2.3.2), and urate oxidase (EC 1.7.3.3) were recovered in the soluble fraction; glutamine synthetase (EC 6.3.1.2) occurred in bacteroids and in the cytosol. Intact, infected (bacteroid-containing) and uninfected cells were prepared by enzymatic maceration of the central zone of the nodule and partially separated by centrifugation on discontinuous sucrose gradients. Glutamine synthetase was largely restricted to infected cells whereas plastid enzymes, de novo purine synthesis, and urate oxidase were present in both cell types. Although the levels of all enzymes assayed were higher in infected cells, both cell types possessed the necessary enzyme complement for ureide formation. A model for the cellular and subcellular organization of nitrogen metabolism and the transport of nitrogenous solutes in cowpea nodules is proposed.

Allantoin↗
PubMed1981

Purification and some properties of urate oxidase from nitrogen-fixing nodules of cowpea.

Urate oxidase (urate: oxygen oxidoreductase, EC 1.7.3.3) was purified 166-fold from nitrogen-fixing root nodules of cowpea Vigna unguiculata [L.] Walp. The purified enzyme showed a specific activity of 5.7 mumol urate oxidised/min per mg protein, a molecular mass of 100 kdaltons, pH optimum between 9 and 10, isoelectric point at PH 6.8, Km(urate) = 18 muM and Km(oxygen) = 29 muM. A number of metal complexing and chelating reagents were inhibitory, as were divalent cations, including Cu2+. Iron stimulated the enzyme. Low concentrations of ammonia, glutamine and xanthine were also inhibitory. The regulation of urate oxidase in relation to the assimilation of fixed nitrogen in legume nodules is discussed.

Ammonia↗
PubMed1975

Effect of preconditioning unconditioned stimulus experience on learned taste aversions.

One taste-aversion study using male Long-Evans rats in which ethanol was the unconditioned stimulus (UCS) and six studies in which lithium chloride (LiCl) was the UCS demonstrate that (a) exposure to the UCS prior to conditioning retards subsequent acquisition of learned taste aversions; (b) a single preconditioning UCS exposure is sufficient to attenuate conditioning; (c) the preconditioning UCS exposure must occur within a limited period prior to conditioning to attenuate learning; (d) repeated conditioning trials will override the effect of prior exposure to the UCS; (e) tolerance to the UCS is not a necessary condition for the attenuation effect to occur; (f) pairing the preconditioning UCS with a novel flavor other than the CS does not remove the preexposure effect, although it may reduce its magnitude; and (g) the degree of disruption is a positive function of preconditioning UCS dosage and an inverse function of conditioning UCS dosage.

Animals↗