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C Peters-Libeu

Publications and source records attributed to C Peters-Libeu.

2 recordsLinked to original sources

Carboxyl-terminal domain of human apolipoprotein E: expression, purification, and crystallization.

Thioredoxin fusion expression vectors for two carboxyl-terminal fragments of human apolipoprotein (apo) E (residues 223-272 and 223-299) were generated from an apoE cDNA with the objective of obtaining structural information on this functionally important region of apoE by X-ray crystallography. A thrombin cleavage recognition site was positioned at the fusion junction to release the apoE fragments from the fusion protein. The fusion proteins were expressed in Escherichia coli, isolated from cell lysates by nickel-affinity column chromatography, and cleaved with thrombin. After gel filtration and ion exchange chromatography, yields of each fragment were approximately 14 mg/L. Both fragments bind to the phospholipid dimyristoylphosphatidylcholine in a manner similar to that of the 216-299 fragment of apoE isolated from plasma, which represents the major lipid-binding region of the protein. Orthorhombic crystals of the apoE 223-272 fragment that diffracted to 1.8 A were obtained in a mixture of 0.1 M imidazole (pH 6.0) and 0.4 M NaOAc (pH 7.0-7.5), containing 30% glycerol. The space group is C222 with cell dimensions of a = 35.17 A, b = 38.95 A, and c = 133.27 A.

Amino Acid Motifs↗

Displacement-parameter weighted coordinate comparison: I. Detection of significant structural differences between oxidation States.

A method, displacement-parameter weighted coordinate comparison, for comparing closely related structures is developed. A 'probability of similarity' is derived from the overlap between the most probable volumes occupied by two analogous atoms in a comparison. The distribution of distances between atom pairs (difference distances), where each distance is weighted by the probability of similarity, is examined. The subset of atom pairs with normally distributed difference distances is used to estimate errors in the difference distances and to calculate the probability that the difference is significant for each atom-pair. These probabilities of difference are shown to correlate with features observed in difference maps for diffraction data from oxidized and reduced forms of the cupredoxin, pseudoazurin. The pair-wise probability of difference also is shown to be correlated with regions in previously published plastocyanin structures which differ upon copper oxidation state change, and which differ in a similar manner when temperature is changed, or pH is changed.

Journal Article↗