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C Scapoli

Publications and source records attributed to C Scapoli.

66 records · Page 4Linked to original sources
PubMed1990

Oligonucleotide correlations between infector and host genomes hint at evolutionary relationships.

The frequencies of oligonucleotides of length 3-6 were studied in 211 sequences of human DNA (659 kilobases), 22 sequences of DNA of human viruses (120 kbs), in 181 sequences of E. coli (442 kbs), and in 42 sequences of phages of E. coli (137 kbs). The sequences were obtained from Genbank(R) 48. The observed frequencies (O) were compared to the expected frequencies (E) obtained in two ways: 1) according to nucleotide composition for each series, and 2) according to first order Markow chains for triplets, second order for quadruplets, and third order for quintuplets and sextuplets. The ratio O/E was obtained for each oligonucleotide. Then, the correlation between the ratio O/E in a pair of series was calculated. Strong correlations were observed for sequences of man and human viruses, and for E. coli and its phages. Other correlations were small. For higher order Markov chains, there is indication of some correlation also between viruses and phages. It was concluded that through analysis of parallel oligonucleotide series it may be possible to infer some of the complex evolutionary relationships existing between cells and their infectors beyond the level of codon usage.

Base Composition↗
PubMed1984

Beta-thalassemia in the Po Delta: selection, geography, and population structure.

The allele frequencies for beta-thalassemia for 51 localities in the province of Rovigo, and in 25 localities in the province of Ferrara, were studied. It was observed that in the province of Ferrara there is a significant cline of frequencies; these decrease from the coast of the Adriatic Sea toward the west. No such gradient was visible in Rovigo. It was advanced, also on the basis of geography documented by ancient maps, that in the province of Rovigo there were multiple foci of selection for the thalassemia gene, and that in the province of Ferrara selection was stronger in the Oriental part of the area. Examination of the isolation by distance model with these data showed that the Malécot-Morton model fits for the Ferrara data and geography, whereas it does not for Rovigo.

Alleles↗
PubMedDate not supplied

Elements of the surname structure of Austria.

The isonymy structure of Austria was studied using the surname distributions in 1081002 private telephone users selected from about 4000000 registered in a 1996 commercial CD-ROM, which contains all Austrian users. The sample was distributed in 120 towns representing an approximately uniform distribution over the country. The number of different surnames found in the whole analysis was 140766. Lasker's distance, the negative value of the logarithm of isonymy between localities, was found to be linearly and significantly correlated with the log of geographic distance, with r = 0.565 +/- 0.011. A dendrogram was built with the matrix of isonymy distance, using the Unweighted Pair-Group Method using Arithmetic averages, UPGMA. It separates the Austrian towns in five main clusters, one along the central portion of the country, another one which occupies the northern region of central Austria; then comes a third cluster at the north-eastern part, a fourth cluster in the western region, and finally a small cluster towards the border with Slovenia. Within each, small subclusters with specific geographic distributions could be delimited. The main clusters correspond fairly well to the classic regions of Austria. The results were compared with those obtained in similar analyses of Switzerland, Germany, Italy and Venezuela. From the present analysis, isolation by distance emerges clearly, and it is stronger than in Germany but smaller than that observed in Italy, Switzerland and Venezuela. The random component of inbreeding estimated from isonymy, at the level of resolution used here, indicates that the inbreeding level in Austria is rather uniform.

Austria↗
PubMedDate not supplied

Isonymy in emigrants from Ferrara in 1981-1988.

The distribution of surnames in the emigrants from the population of the town of Ferrara in the period 1981-88 was studied by sex and place of birth, namely Ferrara versus other places. Emigrants born in Ferrara were defined as first time emigrants and those who had previously immigrated to Ferrara were defined second time emigrants. It was found that random isonymy is smaller in second time emigrants. Sex ratio is not different in the two types of emigrants. As indicators of the abundance of surnames in a distribution, the common ecological indexes derived from entropy were used and compared between types of emigrants. It was found that redundancy, as isonymy, is larger in the first time emigrants than in second time emigrants. It was observed that second time emigrants were consistently and significantly older than first time emigrants, and that a considerable fraction of them, (22.4%) returned to their place of birth. A sexual dimorphism in age at emigration was observed in second time emigrants, females emigrating at an older age than males.

Adult↗
PubMedDate not supplied

Isonymy in records of births and deaths in Ferrara.

Surname distributions were studied in records of male and female births in Ferrara in the period 1982-89, and in records of male and female deaths in the same period. Average year of birth and standard deviation was 1985 +/- 2.3 for the birth series, and 1912 +/- 14.4 for the death series. Then the surname distributions, in two independent samples at an average distance of 73 years, were compared. It was observed that random isonymy within series, which depends on the shape of the distribution, stays fairly constant at three generations of distance, indicating near-equilibrium of surname turnover. The migrational contribution is indicated by the significant decrease of random isonymy between series, measured with the method of Lasker. It was also observed that immigrants to Ferrara have a life-span significantly longer than people born in the town.

Aged↗
PubMedDate not supplied

Microevolution in Ferrara: isonymy 1890-1990.

The distribution of surnames in the population of the town of Ferrara, as it existed in the memory banks of the Municipality Computer in June 1990, was studied by sex, age and place of birth of residents. Random isonymy was studied separately in persons born before 1901, and in persons born in the nine decades thereafter, ending with the period 1981-90. Isonymy was higher in the older age groups studied. Also other indicators of the abundance of surnames in the distribution, the common ecological indexes derived from entropy, were calculated and compared between age groups. It was found that redundancy, as isonymy, is larger in older age classes than in younger classes. Surname effective number was defined as the inverse of isonymy corrected for sample size, and it was observed that it is practically identical with Fisher's alpha. It was then possible to separate random isonymy into two components, so that for sample size N its formulation becomes Ir = 1/alpha + 1/N It was found that in Ferrara alpha increased significantly in time, indicating enrichment of surnames in the population in the century 1890-1990.

Age Factors↗
PubMedDate not supplied

Microevolution in Perugia: isonymy 1890-1990.

The distribution of surnames in the population of the Comune of Perugia, as it existed in the memory banks of the Municipality Computer in autumn 1991, was studied by age and place of birth. Fisher's alpha and Karlin-McGregor's v were estimated in the total population, in persons born before 1901, and in persons born in the nine decades thereafter, ending with the period 1981-1991, for immigrants and for natives of Perugia, respectively. The wealth of surnames was significantly higher in immigrants than in natives of Perugia, as detected by alpha, v and by the log-log regression of the corresponding distributions. Among residents born in Perugia, Fisher's alpha shows a minimum value during 1921-1930, explained as a consequence of the First World War. The relationship between all possible combinations of cohorts born in the 10 different decades was studied through the Euclidean distance and through Lasker's coefficient of relationship, and a significant correlation between the former and time was revealed, both in immigrants and in natives of Perugia. When compared with the Province of Ferrara, Perugia was far richer in surnames, as measured by Fisher's alpha, for the total population and for each of the 10 decades analysed. Recent immigration, measured by Karlin-McGregor's v, was significantly higher in Perugia until the 1960s, equal in both Provinces during the 1970s, and higher in Ferrara during the 1980s.

Adolescent↗
PubMedDate not supplied

Isonymy and the genetic structure of Switzerland. I. The distributions of surnames.

The surname distribution of the population of Switzerland was studied using a sample of 1,702,000 private users registered for the year 1994 in the Helvetic Telephone Directory. These users were distributed in four linguistic areas, in 26 Cantons and 271 Communes of the Confederation. Estimates of unbiased random isonymy, of Fisher's alpha, an indicator of abundance of surnames converging to the allele effective number in standard genetic polymorphisms, and of Karlin-McGregor's v, an indicator of immigration rates, were calculated for each Commune, each Canton, each linguistic area and for the whole Confederation. The Commune with the highest value of alpha was Geneva (alpha = 5312) followed by Versoix (3713) and by the Communes of Vaud on the north shore of Lake Leman, Chavannes (3381), Montreux (3200), Nyon (3114) and Lausanne (3109). The Italian-speaking Communes of the Ticino were next. The lowest value (alpha = 29) was observed in Poschiavo, south of the Berninapass; alpha = 39 was observed in Einsiedeln (Schwyz); then Mels and Widnau (62 and 67, Canton of St Gallen), Frutingen in Bern (72), and Appenzell (80). Accordingly, the highest consanguinity values were observed in the Grisons and in the nucleus of the founding Cantons, while the lowest were observed in the Cantons of Geneva and Vaud, preferential areas of immigration to Switzerland from abroad. The effect of subdivision on isonymy is large at the Commune level, and decreases in Cantons and linguistic groups. French and Italian languages indicate minor, German and Romanisch major inbreeding.

Data Collection↗
PubMedDate not supplied

Isonymy and the genetic structure of Switzerland. II. Isolation by distance.

Isolation by distance in Switzerland was detected comparing the surname distributions between Cantons. The decay of isonymy with geographic distance between Cantons was consistent with Malecot's exponential decay of kinship. Lasker's distance was defined as the negative value of the logarithm of isonymy between localities, and it was found that it is linearly and significantly correlated with the log of geographic distance, both within and between languages. The peculiar geographic and linguistic structure of the Confederation, where mountain barriers exist at short distances separating different languages, might explain the rapid changes in surname similarity. It was predicted that the frequency of markers linked to the Y chromosome would show a similar association with distance in Switzerland.

Genetics, Population↗
PubMedDate not supplied

Detection of genetic structures at short distances in the Pisa area.

The genetic structure of the population of the urban and suburban area of the town of Pisa in Tuscany in Central Italy was studied in 1,174 adults residing in 4 zones in each of 3 sampling areas, using the phenotype and gene frequencies of 9 red cell enzymes. The area investigated has a surface of about 30 km2. The enzymes were: acid phosphatase (ACP1), adenosine deaminase (ADA), adenylate kinase (AK1), esterase D (ESD), glyoxalase I (GLOI), glutamic-pyruvic transaminase (GPT), 6-phosphogluconate dehydrogenase (6-PGD), phosphogluco-mutase 1 (PGM1), and phosphoglycollate phosphatase (PGP). For the analysis of the distributions of phenotype and gene frequencies, standardised variances, kinship profiles, analysis of correspondences and isonymy were used. It was found that in this area genetic differentiation (possibly due to recent immigration) can be perceived even at short geographic distances, indicated by the significant regression of kinship on distance, especially visible in the ADA and GPT systems.

Acid Phosphatase↗
PubMedDate not supplied

Haematological profile in cancer patients: analysis of circadian pattern.

This study was intended to evaluate whether unusual circadian patterns in blood cells exist in cancer patients. Ten patients (five men and five women) suffering from advanced malignancy were compared with a control group of apparently healthy volunteers, of comparable age and sex. After synchronization of daily activities, meals and rest of the two groups, blood samples were taken four times (at 8.00 a.m., 12.00 a.m., 4.00 p.m. and 8.00 p.m.) in a single day. The total red and white cell counts, haemoglobin, platelet count, and neutrophil, lymphocyte, eosinophil, monocyte and basophil differential white cell counts were analysed by both conventional (Student's t-test; multifactorial analysis of variance) and inferential statistics (single and mean cosinor). The average values for platelets (P = 0.04), white blood cells (P = 0.004) and lymphocytes (P << 0.001) showed significant changes with time, independently of disease state. Cosinor analysis indicated a circadian rhythmicity for haemoglobin (P = 0.02), eosinophils (P = 0.014), and lymphocytes (P = 0.001) in healthy subjects, and for eosinophils only (P = 0.024) in cancer patients.

Aged↗