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Biomedical subjects

C T Warnick

Publications and source records attributed to C T Warnick.

At least 19 recordsLinked to original sources

Identification of a p53 response element in the promoter region of the hMSH2 gene required for expression in A2780 ovarian cancer cells.

Defects in the human MSH2 mismatch repair system have been implicated in cellular mutagenesis, tumorigenesis, and chemotherapeutic resistance. The current studies characterized the 5' upstream proximal promoter region of the hMSH2 gene using transient transfection of A2780 ovarian cancer cells. Serial deletions of a 1.88-kb fragment of the proximal promoter region of the hMSH2 gene revealed that promoter activity was restricted to the first -281 bp. Targeted deletions within this -281 bp region coupled with specific sequence mutagenesis identified a response element for the p53 tumor suppressor protein located between -242 and -222 bp. The -242 hMSH2 p53 element is configured as a direct tandem repeat palindrome with 80% homology to the p53 consensus binding sequence. Co-transfection of an hMSH2 reporter and p53 expression vector into the p53-null cell line SK-OV-3 produced 10-fold enhanced transcription, which was lost when the -242 to -222 p53 binding site was mutated. These results clearly demonstrate the presence of a previously unidentified p53 response element in the hMSH2 proximal promoter. Its location at -242 bp upstream of the start site of transcription is distinct from two previously reported p53 sites at -447 and -416, which transactivate in Saos-2 cells (Scherer, S. J., Maier, S. M., Seifert, M., Hanselmann, R. G., Zang, K. D., Muller-Hermelink, H. K., Angel, P., Welter, C., and Schartl, M. (2000) J. Biol. Chem. 275, 37469-37473). Finally, in sharp contrast to their activity in Saos-2 cells, deletion of the -447 and -416 sites in A2780 cells had no effect on hMSH2 promoter activity. Thus, it appears that p53 regulates hMSH2 expression through multiple cell type-specific DNA response elements.

Base Sequence↗

Biochemical parameters which may be useful in improving organ viability after storage.

Biochemical methods that accurately detect ischemic damage in livers stored by flush cooling would be useful in the efficient development of new storage solutions. This study compares UW and Collins' solutions to evaluate those biochemical parameters which may be useful in assessing the reversibility of ischemic damage and the efficiency of organ storage solutions. Livers stored in UW solution showed higher levels of adenine nucleotides at all storage times studied. This increase in adenine nucleotides averaged 29% and was statistically significant. There was also a significant increase in the NAD levels in organs stored in UW solutions; however, the ATP levels were not significantly different after storage in either solution. Storage of livers in UW solution also decreased the amount of DNA damage which occurs with storage as compared to storage in Collins' solution, becoming statistically significant after 48 hr of storage. This suggests that these biochemical parameters may be useful in designing improved storage solutions since they reflect the extent of ischemic damage to the organ and can be determined on a small section of liver taken by biopsy.

Adenine Nucleotides↗

DNA damage and repair in patients receiving high-dose cyclophosphamide and radiation.

DNA damage and repair were assessed by alkaline sucrose gradients in the nonstimulated circulating mononuclear cells of 7 patients receiving high-dose cyclophosphamide (HDCy) and fractionated whole-body irradiation. Measurable damage produced by HDCy appeared to be repaired in about 60 hours. Damage from a radiation dose of 2 Gy was not completely repaired within 24 hours because DNA molecular weight was found to be decreased by an average of 22%. We attempted to assess the impact of HDCy on radiation damage repair by comparing blood irradiated and incubated in vitro before therapy with in vivo incubation following HDCy administration. Two hours after a radiation dose, repair appeared increased following HDCy. These results suggest the possibility that significant interaction at the DNA level may occur when HDCy and irradiation are administered together.

Cyclophosphamide↗

In vivo ischemia and storage injury cause alterations in the activity of poly(adenosine diphosphate ribose) synthetase.

The objective of this study was to determine if DNA damage caused by ischemic insult (blood depletion) causes an alteration in the activity of endogenous mouse kidney poly(ADP-ribose) synthetase. The results show that kidneys made nonviable by warm (37 degrees C) in vitro ischemia (organ storage to study the effects of blood loss at normal body temperature) and in vivo ischemia (surgical depletion of the blood supply by arterial clamping) exhibit decreased levels of enzyme activity. Kidneys made nonviable by cold (0 degrees C) storage injury (organ storage as utilized for transplantation), however, possess elevated levels of enzyme activity. The DNA isolated from ischemic kidneys was shown to have a stimulatory effect upon exogenous calf thymus poly(ADP-ribose) synthetase. Also, electron microscopy analysis of DNA from ischemic kidneys showed that cold storage injury leads to the formation of large (average size = 500 bases) single-stranded regions. The results suggest that the activities of both endogenous and exogenous poly(ADP-ribose) synthetase are related to the nature of DNA damage resulting from ischemic insult.

Animals↗

Characterization of single-stranded regions in DNA from injured tissue.

The objective of this study was to characterize the previously demonstrated decrease in the molecular weight of DNA from kidneys submitted to storage injury. DNA from kidneys stored at either 0 degrees C for 24-96 hr or 37 degrees C for 1-3 hr underwent limited hydrolysis when incubated with S1 nuclease, an enzyme which specifically degrades single-stranded DNA. For warm-storage injury (37 degrees C), the susceptibility of the DNA toward S1 nuclease hydrolysis increased progressively with storage time. In the case of cold-storage injury (0 degrees C), a maximum degree of single strandedness was observed in the DNA representing 60 hr of storage. DNA from kidneys stored for 72 hr or longer was a poor substrate for S1 nuclease. Additionally, the nucleotide composition of the single-stranded regions was analyzed by high-performance liquid chromatography (HPLC). The results showed that single-stranded regions initially rich in dA and dT are formed during warm-storage injury. No such favoritism for a particular base was observed in single-stranded regions produced during cold-storage injury. The data suggest that both warm- and cold-storage injury promote DNA degradation. The storage temperature apparently dictates the mechanism(s) by which the degradative process proceeds.

Animals↗

A description of the damaged DNA produced during tissue injury.

Warm ischemia produces DNA damage which is characterized by both single- and double-strand breaks with 5'-PO4 and 3'-OH ends. In contrast, cold ischemia produces mostly single-strand breaks for the first 60 hr and then, abruptly, double-strand damage is produced. Cold ischemia produces both 5'-OH and 5'-PO4 termini, but 5'-OH ends do not appear until after 24 hr of storage. Cold ischemia, also produces 3'-PO4 ends but we have not found any 3'-OH termini. Mechanisms for DNA degradation during warm and cold ischemia are presented to account for these results. It is suggested that damage to the genetic code may be prevented if degradation of the DNA can be confined to the production of the easily repairable 5'-PO4/3'-OH opposed ends.

Alkaline Phosphatase↗

Influence of a protein-free diet on survival and DNA following hemorrhagic shock and ischemia.

Rats were fed a protein-free diet until 20-30% of body weight was lost and then hemorrhagic shock or liver ischemia was induced. Alkaline sucrose gradients were used to analyze for breaks in DNA. Whereas reversible shock caused no DNA damage in five rats on the standard diet, DNA damage was found in ten animals subjected to severe shock. In contrast, ten rats on the protein-free diet had no significant DNA breakage even after severe shock. Diet also influenced postoperative survival; ten of 15 rats on the standard diet compared to ten of 12 on the protein-free diet survived for the 1 h postshock liver sample. To examine the biologic effect animals were subjected to hemorrhagic shock without laparotomy and liver biopsy. Three of 18 rats on the standard diet and 12 of 20 animals on the protein-free diet lived longer than 2 h (P less than .001). One rat on the standard diet and three on the protein-free diet survived for longer than 72 h. After 30 and 60 min of liver ischemia, rats on both diets showed similar breakage of DNA with repair following reperfusion. After 120 min of liver ischemia, there was similar DNA breakage for both diets; however, for rats on the standard diet there was no repair while there was DNA repair for rats on the protein-free diet.

Animals↗

Protection from DNA damage during an ischemic cell injury.

During an ischemic cell injury, cellular NAD levels are lowered and DNA is damaged in a manner similar to other types of injury. Nicotinic acid given to an animal prior to the ischemic insult, caused very little change in the NAD levels but minimized the DNA damage of the injury. This protection is eliminated by 3-aminobenzamide which indicates a possible involvement of poly (ADP-ribose) synthetase in the process.

Animals↗

Characteristics of the binding of RNA polymerase to template in mouse liver nuclei.

In whole nuclei isolated from mouse liver, the reaction of free RNA polymerase with the artificial template, poly (dA-dT), is temperature dependent. At assay temperatures below 37 degrees C, the amount of free RNA polymerase (RNA polymerase not inhibited by actinomycin D) which can be measured is substantially reduced. However, if the nuclei are preincubated at 37 degrees C in the presence of template and then assayed at lower temperatures, substantial amounts of enzyme activity can be measured. The active complex (enzyme bound to template) is resistant to inactivation by heparin. This evidence is consistent with a two-stage model for binding of eukaryotic RNA polymerase to template similar to the binding of prokaryotic RNA polymerase to template.

Animals↗

Effect of a protein-free diet and fasting on RNA polymerase activity in mice.

The objective of this study was to measure the effect of diet on the distribution of RNA polymerase activity in mice kidney. Bound RNA polymerase activity was decreased in kidneys of fasted mice. During a short fast (16 hours), this decrease in bound RNA polymerase I activity was accompanied by an increase in free activity and suggested a possible interference in binding as the reason for decreased bound activity. Bound RNA polymerase II also decreased but with no increase in free activity. During longer fast times (40 hours), the bound RNA polymerase activity (RNA polymerase I and II) remain depressed and the free activity returns to control levels. Fasting decreased bound RNA polymerase I in liver by 41% after 40 hours but had little effect on the free activity. Liver of mice, fed a protein-free diet, were found to have an increased RNA polymerase activity due to a large increase in free RNA polymerase I activity. All other liver RNA polymerase activities were unchanged. In contrast, kidney's of mice fed a protein-free diet, have decreased RNA polymerase activity due to a decrease both in bound RNA polymerase I and II; free RNA polymerase is unchanged. These results demonstrate that diet has a very selective effect on RNA polymerase activity.

Animals↗

Recovery of nucleotide levels after cell injury.

The major pathway of purine catabolism in mouse kidney during ischemia occurs through IMP, inosine, hypoxanthine, and xanthine. Short periods of ischemia (reversible cell injury) allow a rapid return of the energy charge to control values and a rapid return of ATP and GTP to value of 60-70% of control. ATP and GTP then slowly return to control levels over the next 24 h. Long periods of ischemia (irreversible cell injury; ischemic times longer than 1 h) allow a gradual return of the energy charge to control levels. ATP, GTP or total adenine or guanine nucleotides do not return to control levels even after 24 h of reinfusion under these circumstances. We conclude that irreversibly injured kidney cells retain the ability to phosphorylate purine nucleotides, but lose the ability to restore the concentrations of the purine nucleotides to control values.

Adenine Nucleotides↗

Increased template activity of chromatin isolated from shocked liver.

Hemorrhagic shock causes an increase in the template activity of chromatin isolated from rat liver, as measured with E. coli RNA polymerase. The increase in template activity is directly related to the time of shock: The longer the shock period, the greater the increase in template activity. Reinfusion reduces the increased template activity. The increased template activity of the chromatin during hemorrhagic shock may be indicative of nuclear changes which contribute to the inability of the cell to recover from severe shock.

Animals↗

The subcellular distribution of poly-A-degrading activity in mouse kidney.

Most (95%) of the poly-A-degrading activity of the mouse kidney was found in the cytoplasmic fraction and only 5% was found in the nuclear fraction; 43% of the poly-A-degrading activity of the cytoplasm was found in the mitochondria, 22% in the microsomes, and 30% in the soluble fraction. Differences in activity and specificity indicate that poly A is degraded in the nucleus by enzymes that are separate and distinct from the enzymes in the cytoplasm that degrade poly A. The nuclear poly-A-degrading activity can be separated into an endonuclease with a general specificity and exonuclease, similar to one found in Ehrlich ascites tumor cells, which shows some specificity for poly A.

Animals↗