Selective binding and easy separation of C70 by nanoscale self-assembled capsules.
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Journal Article↗
Biomedical subjects
Carles Bo
Publications and source records attributed to Carles Bo.
Structural evolution in polyoxometalates: a DFT study of dimerization processes in Lindqvist and Keggin cluster anions.
Density functional theory (DFT) calculations are used to investigate dimerization, by acid condensation, between Lindvist and Keggin cluster anions. When specific addendum atoms are present (notably, Ti, V, Nb, and Cr), these clusters dimerize in the presence of acid via the formation of mu-O linkages. These processes may be viewed as molecular models for the formation of metal-oxygen bonds in the active sites of metalloenzymes, or in materials chemistry, and we here provide detailed information concerning these reactions. For this, DFT calculations are used to provide insight into the mechanism(s) associated with dimerization of Lindqvist clusters, W5MO19(n-) (M = W, Mo, V, Nb, and Ti) in acidic media. In full accord with experimental data, our calculations show that dimerization of Nb and Ti derivatives is thermodynamically favored and that this is not the case for dimerization between Mo, V, and W addendum atoms. In addition, dimerization of PW11TiO40(5-) and SiW11NbO40(5-) to give the corresponding dimers was also calculated to be exothermic. Two possible mechanisms, involved in two competing pathways, are evaluated and discussed. Conclusions are presented concerning the role played by the nature of the metal atoms taking part in M-mu-O-M bond formation. A correlation is established between the relative strengths of specific terminal M=O bonds in monomeric precursors and the tendency of these to form M-mu-O-M bonds.
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Origin of stereoinduction by chiral aminophosphane phosphinite ligands in enantioselective catalysis: asymmetric hydroformylation.
The origin of stereoinduction by chiral aminophosphane phosphinite (AMPP) ligands in asymmetric hydroformylation was investigated with a theoretical approach. The roles of the stereogenic center at the aminophosphane phosphorus atom (NP*) and of the chirality of the backbone were analyzed by considering three experimentally tested cases: 1) P-stereogenic yielding high ee, 2) P-nonstereogenic yielding low ee, and 3) P-stereogenic yielding low ee. We succeeded in reproducing the experimentally observed trends for the three studied AMPP ligands. Our results indicated that alkene insertion into the rhodium-hydride bond is the selectivity-determining step, and not alkene coordination. Additional calculations on model systems revealed that the different nonbonding weak-type interactions of styrene with the substituents of the NP* stereogenic center in an axial position is responsible for stereodifferentiation. The chirality of the AMPP backbone plays a secondary role. The rationalization of the stereochemical outcome is not straightforward, because two competitive equatorial/axial reaction paths, showing opposite asymmetric induction, must be considered. Construction of stereochemical models and evaluation of stereoinduction for novel ligand systems suggested that two prerequisites are required to improve the performance of AMPP-type ligands in asymmetric hydroformylation: 1) combination of stereorecognition and stereohindrance by substituents at the NP* atom, and 2) more rigid backbones.
Catalysis↗
Exohedral reactivity of trimetallic nitride template (TNT) endohedral metallofullerenes.
[structures: see text] Fullerenes containing a trimetallic nitride template (TNT) within the cage are a particularly interesting class of endohedral metallofullerenes. Recently two exohedral derivatives of the Sc3N@C80 fullerene have been synthesized: a Diels-Alder and a fulleropyrrolidine cycloadduct. The successful isolation, purification, and structural elucidation of these metallofullerenes derivatives have encouraged us to understand how the chemical reactivity is affected by TNT encapsulation. First of all, we predicted the most reactive exohedral sites, taking into account the double bond character and the pyramidalization angle of the C-C bonds. For this purpose, a full characterization of all different types of C-C bonds of the following fullerenes was carried out: I(h)-C60:1, D3-C68:6140, D3-Sc3N@C68, D(5h)-C70:1, D(3h')-C78:5, D(3h)-Sc3N@C78, I(h)-C80:7 and several isomers of Sc3N@C80. Finally the exohedral reactivity of these TNT endohedral metallofullerenes, via [4 + 2] cycloaddition reactions of 1,3-butadiene, was corroborated by means of DFT calculations.
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SPANphos: trans-spanning diphosphines as cis chelating ligands!
Several SPANphos ligands based on a spirobichroman backbone, introduced as a putative trans ligand, form compounds of the type [Rh(nbd)(SPANphos)]BF(4) () in which both norbornadiene and SPANphos act as cis chelating ligands. The cyclooctadiene rhodium chloride derivatives form bimetallic complexes. Crystal structures for several of these compounds and free ligands are reported. Semiemperical AM1 and DFT calculations show that spirobichroman can assume several conformations, some of which are suitable for the formation of cis chelating SPANphos. All calculations on SPANphos complexes of PdCl(2), PtCl(2) and Rh(CO)Cl show that the trans complex is more stable by 4-10 kcal mol(-1). The cis conformation is enforced by the cis chelating norbornadiene ligand.
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General rule for the stabilization of fullerene cages encapsulating trimetallic nitride templates.
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Prediction of heterofullerene stabilities: a combined DFT and chemometric study of C56Pt2, C57Pt2 and C81Pt2.
A systematic search of the regioisomers of the heterofullerenes, C57Pt2 and C56Pt2, has been carried out by means of density functional calculations to find the most stable structures. Both heterofullerenes incorporate two metal atoms into the fullerene surface. In the case of C57Pt2, one platinum atom substitutes one carbon atom of C60 and the other platinum atom replaces a C--C bond, whereas in C56Pt2 each platinum atom replaces one C--C bond. Several geometric factors were studied, three of which have particularly important effects on the relative stabilities of the regioisomers: the Pt--Pt separation, the number of C--C bonds remaining after substitution, and the type of C--C bond that is substituted. All these factors indicate that the deformation of the carbon framework is a general factor that governs the relative stabilities of the regioisomers. Because a high number of factors affect the stability of the heterofullerenes we also used chemometric techniques in this study. Partial least-squares (PLS) regression was used to establish the structure-energy relationships of C57Pt2 and C56Pt2 heterofullerenes. The understanding gained of the factors that affect the relative isomers stabilities has allowed us to predict the stabilities of larger disubstituted carbon cages, for example, C81Pt2 heterofullerene.
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Polyoxometalates in solution: Molecular dynamics simulations on the alpha-PW12O40(3-) Keggin anion in aqueous media.
The Keggin anion, PW12O40(3-), is one of the most representative polyoxometalates (POMs). In recent years increasing theoretical work focused on this family of compounds has explained or even predicted some of their properties using quantum mechanics methods. In this report we applied for the first time molecular dynamics (MD) to the title compound to analyze its interactions with water. We used three atomic charge definitions (Mulliken, ChelpG, and formal charges) to carry out MD simulations. The results show that the terminal oxygens of the cluster are invariably most effectively solvated by water because of their prominent position within the framework. On the other hand, bridging oxygens, which are confined in more internal positions, concentrate a smaller portion of the whole solvation. We investigated the hydrogen bonds existing between water and the cluster, confirming that the terminal positions form more contacts with H2O than any other site of the cluster. In the end, the lifetime of such contacts is longer with bridging oxygens, presumably due to their higher atomic charge.
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In quest of factors that control the enantioselective catalytic Markovnikov hydroboration/oxidation of vinylarenes.
This study attempts to rationalise the unpredictable performance of transition metal catalysed asymmetric hydroboration of vinylarenes on varying the precursor of the catalyst from cationic to neutral species, [M(cod)(L-L)]BF4, [M(mu-Cl)(cod)]2/(L-L), the metal (M=Rh and Ir), and the hydroborating reagent (catecholborane, pinacolborane). The approaches are based on the agreement between experimental data provided by (R)-Binap and (R)-Quinap modified catalytic systems and computational data evidenced by DFT calculations and QM/MM strategies. Unprecedentedly high enantiomeric excesses in the hydroboration/oxidation of vinylarenes with both electron-withdrawing substituents ((R)-(+)-1-p-F-phenylethanol, ee up to 92 %) and electron-releasing substituents ((R)-(+)-1-p-MeO-phenylethanol, ee up to 98 %), can be attributed to a rhodium halide key intermediate.
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Organometallic derivatives of fullerenes: a DFT study of (eta2-Cx)[Pt(PH3)2]n (x = 60, 70, 84; n = 1-6).
To determine the relationship among curvature, patch type, and reactivity of the C-C site, a series of density functional calculations were performed on several substituted fullerenes. [6:6] pyracylene-type sites are the most reactive sites in all analyzed cages: C(60), C(70), and C(84). The binding energy between the Pt(PH(3))(2) unit and fullerene is almost independent of the size of the cage and of the number of metals coordinated on the fullerene surface. Contrarily, curvature and type of carbon-carbon bond are determinant for the coordination strength. The use of relatively large basis sets is necessary to have consistent energies.
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Insights into CO/styrene copolymerization by using Pd(II) catalysts containing modular pyridine-imidazoline ligands.
Continuing our studies into the effect that N-N' ligands have on CO/styrene copolymerization, we prepared new C(1)-symmetrical pyridine-imidazoline ligands with 4',5'-cis stereochemistry in the imidazoline ring (5) and 4',5'-trans stereochemistry (6-10) and compared them with our previously reported ligands (1-4). Their coordination to neutral methylpalladium(II) (5 a-10 a) and cationic complexes (5 b-10 b), investigated in solution by NMR spectroscopy, indicates that both the electronic and steric properties of the imidazolines determine the stereochemistry of the palladium complexes. The crystal structures of two neutral palladium precursors [Pd(Me)(2-n)Cl(n)(N-N')] (n=1 for 8 a; n=2 for 9 a') show that the Pd-N coordination distances and the geometrical distortions in the imidazoline ring depend on the electronic nature of the substituents in the imidazoline fragment. Density functional calculations performed on selected neutral and cationic palladium complexes compare well with NMR and X-ray data. The calculations also account for the formation of only one or two stereoisomers of the cationic complexes. The performance of the cationic complexes as catalyst precursors in CO/4-tert-butylstyrene copolymerization under mild pressures and temperatures was analyzed in terms of the productivity and degree of stereoregularity of the polyketones obtained. Insertion of CO into the Pd-Me bond, which was monitored by multinuclear NMR spectroscopy, shows that the N ligand influences the stereochemistry of the acyl species formed.
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On the origin of regio- and stereoselectivity in the rhodium-catalyzed vinylarenes hydroboration reaction.
We studied the hydroboration of vinylarenes using rhodium complexes bearing atropoisomeric ligands. For the first time, an NMR spectroscopy study of the styrene and catecholborane addition to the precursor of catalyst [Rh(COD)(L-L)]BF(4), where L-L = (R)-BINAP and (R)-QUINAP, showed evidence of the structure of intermediates involved in the catalytic cycle. On the basis of this evidence, and using DFT calculations and QM/MM strategies, we investigated the origin of regio- and stereoselectivity. We determined the structure and stability of the key intermediates for several ligands and substrates and found excellent agreement between the relative stability of the intermediates and the experimentally observed trends. Using model systems, we analyzed the role of the steric and electronic features of the ligands and the substrates in detail.
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DFT studies of uranyl acetate, carbonate, and malonate, complexes in solution.
The aim of this work is to demonstrate that theoretical chemistry can be used as a complementary tool in determining geometric parameters of a number of uranyl complexes in solution, which are not observable by experimental methods. In addition, we propose plausible structures with partial geometric data from experimental results. A gradient corrected DFT methodology with relativistic effects is used employing a COSMO solvation model. The theoretical calculations show good agreement with experimental X-ray and EXAFS data for the triacetato-dioxo-uranium(VI) and tricarbonato-dioxo-uranium(VI) complexes and are used to assign possible geometries for dicalcium-tricarbonato-dioxo-uranium(VI) and malonato-dioxo-uranium(VI) complexes. The results of this exercise indicate that carbonate bonding in these complexes is mainly bidentate and that hydroxo bridging plays a critical role in the stabilization of the polynuclear uranyl complexes.
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Relative stability in alpha- and beta-Wells-Dawson heteropolyanions: a DFT study of [P2M18O62]n- (M = W and Mo) and [P2W15V3O62]n-.
To determine the relative stability of alpha and beta rotational isomers of the Wells-Dawson structure, the energies of some fully oxidized, single- and 2-fold-reduced systems were calculated by means of DFT calculations. The thermodynamics of the alpha/beta equilibrium for P(2)M(18) Wells-Dawson anions is slightly shifted toward the alpha structure, but the difference in stability is smaller than in the Keggin anions. Tungstates (2:18) and vanadotungstates (2:3:15) show minimal redox differences between isomers, as the electronic structure of the frontier orbitals appears to be nearly the same. In addition, an alternative arrangement is proposed that have long and short Mo-O bonds in beta-P(2)Mo(18) with an idealized C(3) symmetry. This arrangement was computed to be about 8.2 kcal mol(-1) more stable than the nonalternate framework of C(3)(v)() symmetry. The P(2)Mo(18) is the Wells-Dawson anion for which the alpha/beta equilibrium most resembles that of the Keggin anions.
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Computational insight into the reaction intermediates in the glycosylation reaction assisted by donor heteroatoms.
We studied the geometric and electronic structure of several cations (9 and 18-23) that are usually proposed as intermediates for glycosylation reactions using DFT methods. For ions 9 and 18-23 the geometries obtained corresponded to an open ion (6b type) irrespective of the exocyclic heteroatom (S, Se, I) and the size of the cycle (furanoses as well as pyranoses). We studied how substituents bonded to the exocyclic heteroatom (R in SR and SeR) affect the structure of ions and found that the geometry approached that of episulfonium and episelenonium ions (6a type) when the substituents were electron donors. The tert-butyl group and the 2,4,6-trimethyl- and 2,4,6-trimethoxyphenyl and trimethylsilyl groups produced the strongest of these effects. The presence of an electron-withdrawing group (CO-CF(3)) bonded to the hydroxymethyl group produced a similar but weaker effect. We analyzed this behavior in terms of molecular orbital interactions.
Cations↗
Ab initio and DFT modelling of complex materials: towards the understanding of electronic and magnetic properties of polyoxometalates.
In this review we summarise the quantum chemistry studies carried out by several groups over the last ten years on polyoxometalates, or polyoxoanions. This is an immense family of compounds made up of transition metal ions in their highest oxidation state and oxo ligands. The continuous progress of computers in general, and quantum chemistry software in particular, has enabled a number of topics in polyoxometalate chemistry to be studied from the electronic structure of the most representative polyoxometalate, the so-called Keggin anion, to the factors governing the inclusion complexes and the magnetism in reduced complexes.
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Electronic properties of polyoxometalates: electron and proton affinity of mixed-addenda Keggin and Wells-Dawson anions.
A series of systematic DFT calculations were conducted on Keggin [SiW(9)M(3)O(40)](n-), M = Mo, V, and Nb; and Wells-Dawson anions [P(2)M(18)O(62)],(6-) M = W and Mo; [P(2)M(15)M(3)'O(62)](m-), M = W and Mo, M' = W, Mo, and V to analyze the redox properties and the basicity of the external oxygen sites in polyoxometalates with nonequivalent addenda metals. The energy and composition of the lowest unoccupied orbitals, formally delocalized over the addenda atoms, determine the redox properties of a polyoxometalate. When a Mo(6+) substitutes one W(6+) in the 1:12 tungstate, the energy of the LUMO decreases and the cluster is more easily reduced. The tungstoniobates behave differently because the niobium orbitals insert into the tungsten band and the reduction of [SiW(9)Nb(3)O(40)](7-) yields the blue species SiW(9)Nb(3) 1e and not the cluster SiW(9)Nb(2)Nb(IV). In Wells-Dawson structures, the polar and equatorial sites have different electron affinities and the reduction preferentially occurs in the equatorial sites. Inserting ions with larger electron affinities into the polar sites can modify this traditional conduct. Hence, the trisubstituted [P(2)W(15)V(3)O(62)](9-) anion is reduced in the vanadium polar sites. By means of molecular electrostatic potential maps and the relative energy of the various protonated forms of [SiW(9)V(3)O(40)](7-) and [SiW(9)Mo(3)O(40)](4-), we established the basicity scale: OV(2) > OMo(2) > OW(2) > OV > OW > OMo. Finally, a continuum model for the solvent enabled us to compare anions with different total charges.
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A DFT study of the electronic spectrum of the alpha-keggin anion [Co(II)W(12)O(40)](6-).
Multiplet splittings for several excited configurations of [Co(II)W(12)O(40)](6-) were calculated using DFT methods. In agreement with the experimental interpretation of the spectrum the calculations found that the first strong band corresponds to Co d-d transitions, but it is worth noting that superposed to these transitions there are charge transfer transitions from cobalt to tungsten. The calculations also showed the importance of Jahn-Teller distortions in the excited states. With the exception of the consequences derived from a smaller splitting of d cobalt orbitals the d-d spectrum of [CoCl(4)](2-) is similar to that of the more complex Keggin anion. Finally, the energy of the bielectronic transition (4)A(2) --> (4)T(1)(P) was estimated via an approximate procedure based on ligand field theory.
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