Biomedical subjects

Carmen Herrmann

Publications and source records attributed to Carmen Herrmann.

5 recordsLinked to original sources

PubMed2006

Trinuclear copper(II) complexes derived from Schiff-base ligands based on a 6-amino-6-deoxyglucopyranoside: structural and magnetic characterization.

The trinuclear copper(II) complexes ([CuL1)(mu-ac)Cu(mu-ac)CuL1) (1) and ([CuL2)(mu-ac)Cu(mu-ac)CuL2) (2) of the tridentate aminosaccharide-derived Schiff-base ligands H2L1 [6-N-(salicylidene)amino-6-deoxy-1,2,3-tri-O-methyl-alpha-D-glucopyranoside] and H2L2 [6-N-(3,5-di-tert-butylsalicylidene)amino-6-deoxy-1,2,3-tri-O-methyl-alpha-D-glucopyranoside] were synthesized and structurally characterized. The trinuclear complex units can be described as two terminal copper-ligand moieties bridged by a central copper acetate moiety, with the Cu centers arranged in a triangular fashion. IR and UV/vis spectroscopic studies strongly indicate that the trinuclear structure is maintained in a methanolic solution. The temperature dependence of the magnetic susceptibility of both complexes shows a moderate antiferromagnetic coupling and can be well interpreted by applying a symmetric Cua-Cub-Cua' model with linear spin topology. The fit of the magnetic data affords coupling constants J of -34 and -24 cm(-1) for 1 and 2, respectively [H = -J(SaSb + SbSa')]. For mu-alkoxo-mu-acetato-bridged copper(II) complexes with a large dihedral angle between the adjacent coordination planes, as found in 1 and 2, such an antiferromagnetic coupling is unusual. However, density functional theory calculations of 2 using BP86, B3LYP*, and B3LYP density functionals confirmed a symmetric doublet ground state.

Journal Article↗

PubMed2006

Can Raman optical activity separate axial from local chirality? A theoretical study of helical deca-alanine.

Motivated by experimental work on the distinction of protein secondary structure motifs by Raman optical activity (ROA) spectroscopy, we demonstrate using density functional theory that axial chirality in structures with different local chirality can be filtered out by ROA spectroscopy. To this purpose, two diastereomers of right-handed helical deca-alanine, the (all-S) and the (R,S,R,S,R,S,R,S,R,S) form, are compared. Furthermore, we suggest to interpret calculated ROA spectra of large molecules in terms of vibrational bands rather than individual peaks. This is due to the non-homogeneous effect of the harmonic approximation as well as of the chosen electronic structure method onto the vibrational frequencies, which in a dense region of many vibrations will strongly determine the shape of the spectrum. In addition, the calculated ROA spectrum of (all-S)-deca-alanine is compared to the experimental spectrum of poly-(L)-alanine in solution.

Alanine↗

PubMed2006

Spin states in polynuclear clusters: the [Fe2O2] core of the methane monooxygenase active site.

The ability to provide a correct description of different spin states of mono- and polynuclear transition metal complexes is essential for a detailed investigation of reactions that are catalyzed by such complexes. We study the energetics of different total and local spin states of a dinuclear oxygen-bridged iron(IV) model for the intermediate Q of the hydroxylase component of methane monooxygenase by means of spin-unrestricted Kohn-Sham density functional theory. Because it is known that the spin state total energies depend systematically on the density functional, and that this dependence is intimately connected to the exact exchange admixture of present-day hybdrid functionals, we compare total energies, local and total spin values, and Heisenberg coupling constants calculated with the established functionals BP86 and B3LYP as well as with a modified B3LYP version with an exact exchange admixture ranging from 0 to 24%. It is found that exact exchange enhances local spin polarization. As the exact exchange admixture increases, the high-spin state is energetically favored, although the Broken-Symmetry state always is the ground state. Instead of the strict linear variation of the energy splittings observed for mononuclear complexes, a slightly nonlinear dependence is found. The Heisenberg coupling constants J(Fe1Fe2) --evaluated according to three different proposals from the literature -- are found to vary from -129 to -494 cm(-1) accordingly. The experimental finding that intermediate Q has an antiferromagnetic ground state is thus confirmed.

Binding Sites↗

PubMed2005

Theoretical study on the spin-state energy splittings and local spin in cationic [Re]-Cn-[Re] complexes.

Total spin-state energy splittings are calculated for mono- and dications of the formula {[Re]-Cn-[Re]}z+ where [Re] = eta5-(C5Me5)Re(NO)(PPh3). Cn is an even-numbered carbon chain with n ranging from 4 to 20, and z is 1 or 2. These complexes are experimentally known, and their potential role as molecular electronic devices initiated this work. We have considered the different total spin states monocation/doublet, monocation/quartet, dication/singlet, and dication/triplet. Data obtained for two density functionals BP86 and B3LYP were compared to verify the internal consistency of the results. In both ionization states, the low-spin state is the ground state, but the spin-state splittings decrease as the chain gets longer. For the dications, the splitting reaches a nearly constant value of about 10 kJ/mol with BP86 and about 4 kJ/mol with B3LYP when there are at least 14 carbon atoms in the chain, whereas for the monocations, no constant value appears to be reached asymptotically, not even if 20 carbon atoms are in the chain. For monocations, the splittings range from 138 kJ/mol (n = 4) to 68 kJ/mol (n = 20) with BP86 and from 134 kJ/mol (n = 4) to 73 kJ/mol (n = 20) with B3LYP and are thus considerably higher than those of the dications. The spin-state splittings are qualitatively mirrored by the energy splitting between the highest-occupied molecular orbital with beta spin (HOMObeta) and the lowest-unoccupied molecular orbital with alpha spin (LUMOalpha) as obtained in the low-spin state. Furthermore, the HOMOalpha-LUMOalpha gaps decrease as the carbon chain lengthens. In addition, the local distribution of the ŝz expectation value is analyzed for the monocation/doublet, the monocation/quartet, and the dication/triplet state using a modified Löwdin partitioning scheme. In the monocation/doublet and the dication/triplet state, the electron spin is distributed mainly on the metal centers and slightly delocalized onto the carbon chain. In the monocation/quartet state for chain lengths of more than 8 carbon atoms, the electron spin is mainly localized on selected atoms of the chain and not on the metal centers. In all cases, the spin delocalization onto the chain increases as the chain gets longer.

Journal Article↗

PubMed2005

Comparative analysis of local spin definitions.

This work provides a survey of the definition of electron spin as a local property and its dependence on several parameters in actual calculations. We analyze one-determinant wave functions constructed from Hartree-Fock and, in particular, from Kohn-Sham orbitals within the collinear approach to electron spin. The scalar total spin operators S2 and Sz are partitioned by projection operators, as introduced by Clark and Davidson, in order to obtain local spin operators SASB and SzA, respectively. To complement the work of Davidson and co-workers, we analyze some features of local spins which have not yet been discussed in sufficient depth. The dependence of local spin on the choice of basis set, density functional, and projector is studied. We also discuss the results of Sz partitioning and show that SzA values depend less on these parameters than SASB values. Furthermore, we demonstrate that for small organic test molecules, a partitioning of Sz with preorthogonalized Lowdin projectors yields nearly the same results as one obtains using atoms-in-molecules projectors. In addition, the physical significance of nonzero SASB values for closed-shell molecules is investigated. It is shown that due to this problem, SASB values are useful for calculations of relative spin values, but not for absolute local spins, where SzA values appear to be better suited.

Journal Article↗