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Chagit Denekamp

Publications and source records attributed to Chagit Denekamp.

10 recordsLinked to original sources
PubMed2007

Anion-binding properties of the tripyrrolemethane group: a combined experimental and theoretical study.

Tripyrrolemethane- and bistripyrrolemethane-containing systems were recently reported to be efficient and selective hosts for anions. Nevertheless, the basic intrinsic properties of tripyrrolemethane as a ligand for anions have not yet been explored. Here we report the study of the anion-binding properties of the tripyrrolemethane group. We applied a combined experimental and theoretical approach to determine the affinity of the tripyrrolemethane system for different anions in the gas phase, in solution and in the crystalline state. In the crystal, the tripyrrolemethane group forms a number of different complexes with the bromide ion, some involving the participation of more than one ligand species. Despite the very similar basicity of fluoride and dihydrogen phosphate, the tripyrrolemethane ligand exhibits a clear preference for the fluoride anion in solution, which indicates an anion-binding system and not merely deprotonation. Although the affinity of the tripyrrolemethane ligand for other ions was negligible in solution, gas-phase studies show that complexation with larger halide ions is favoured over complexation with fluoride.

Journal Article↗
PubMed2006

Benzene loss from trityl cations--a mechanistic study.

Triarylmethyl cations eliminate substituted benzene in the gas phase, upon activation. The mechanism of this process has been studied using deuterium labeling, substituent effects, and density functional theory calculations. It is shown that this apparently simple dissociation is in fact a complicated stepwise process that involves several consecutive hydride shifts. The combination of experimental evidence and computational results leads to a clear description of transition states and reaction intermediates.

Journal Article↗
PubMed2005

Development of mass spectrometric method for analysis of cyclic nitramine explosives DTIW and HNIW.

Mass spectrometric (MS) methods are used for the analysis of two novel nitramine explosives-hexanitrohexaazaisowurzitane (HNIW) and 4,10-dinitro-2,6,8,12-tetraoxa-4,10-diazaisowurzitane (DTIW). The methods include electrospray (ESI) and atmospheric pressure chemical ionization techniques for liquid chromatography/MS (LC/MS), chemical ionization for direct introduction (DCI), and gas chromatography/MS (CI-GC/MS). It is found that HNIW (438 Da) is detectable using both positive and negative modes of DCI and in the negative mode ESI-MS. Several anions were found to complex with HNIW, e.g., CF3CO2-, Cl-, Br-, I-, NO3-, and NO2-. On the other hand, DTIW could only be detected using positive DCI and CI-GC/MS, where an MH+ ion (m/z 263) was formed. The fragmentation pathways of the two nitramines were further studied by MS2 experiments. Apparently, the main fragmentation pathway of the MH+ ion of DTIW involves the loss of nitrous acid. Several anion adducts of HNIW that were studied dissociate to afford neutral HNIW and the added anions. However, Cl-, Br-, I-, and NO2- afford a series of fragments that resulted from the dissociation of the isowurzitane structure. For these anions, limit of detection was also found. To understand some of the HNIW fragmentation pathways, DFT calculations were used.

Journal Article↗
PubMed2005

Anomeric distinction and oxonium ion formation in acetylated glycosides.

Collision-induced dissociation of ammonium-cationized alpha and beta acetyl pyranosidic isomers were studied and stereochemical dependence of the reactivity towards elimination of acetic acid from the anomeric position was found. It is shown that isomers that contain trans diacetyloxy groups at positions 1 and 2 of the pyranoside are more reactive, allowing anomeric distinction according to the relative abundance of the oxocarbenium product ion of this reaction in the spectrum. The higher reactivity of trans isomers is rationalized by neighboring group assistance that is possible only in the trans configuration. DFT calculations indicate that the lesser energetic reaction path occurs in an ammonium-cationized trans diequatorial 2,3-diacetoxy tetrahydropyran that was used as a model in order to study this process theoretically. It is also found that the configuration at position 4 of the carbohydrate plays a major role in the rate of formation and stability of oxocarbenium ions.

Acetylation↗
PubMed2005

Formation and stability of oxocarbenium ions from glycosides.

Structural, protecting group and leaving group effects in the formation of oxocarbenium intermediates were studied in the gas phase. It is found that significant stabilization of oxocarbenium cations is achieved by protecting groups that interact with the cationic center via neighboring group participation despite the electron-withdrawing character of these moieties. On the other hand, ethereal protecting groups do not facilitate the formation of oxocarbenium intermediates. The experimental findings are supported by DFT calculations that show the following order of stabilization by the group adjacent to the cationic center: RCO > SiR(3) > R, where R is an alkyl group. This indicates that the SN1-like mechanism that is commonly proposed for this reaction is not always valid. Moderate leaving group effect is also detected in a series of thioaryl glucopyranosides.

Glycosides↗
PubMed2004

Remarkable amine-TFA self assembly.

Supramolecular assemblies that are formed between amines and trifluoroacetic acid were studied using electrospray ionization mass spectrometry. Distinctive association behavior of primary, secondary, and tertiary amines with trifluoroacetic acid upon identical experimental conditions is observed and indicates that steric effects dominate in the formation of these protonated clusters. Extraordinary complexation behavior is observed in the case of R-(+)-alpha-methylbenzylamine and 4-tert-butyl-cyclohexylamine that form high-order clusters. The strong relation between stereochemistry and assembly results in the specific association characteristics of trans 4-tert-butyl-1-phenylcyclohexylamine when compared with the cis isomer. The cis isomer gives rise to a highly abundant [M(4)TFA(3) + H](+) ion (M = amine molecule, TFA = trifluoroacetic acid), as observed for other primary amines. However, the trans isomer generates higher [M(n)TFA(m) + H](+) cluster ions, the largest and most abundant being an [M(7)TFA(6) + H](+) ion. Collision induced dissociation spectra that were recorded for several [M(n)TFA(m) + H](+) cluster ions typically show the consecutive losses of M.TFA moieties. Density functional theory calculations indicate that the highly abundant [M(4)TFA(3) + H](+) clusters are macrocycles and support the formation of these structures with TFA and not with acetic acid.

Journal Article↗
PubMed2003

Homolytic cleavages in pyridinium ions, an excited state process.

The favored fragmentation pathway for protonated and alkylated pyridinium cations of the general formula p-XC(6)H(4)CH(2)CH(2)CH=CH Py(+)R (R=H, Me; Py=pyridine) is a C-C homolytic cleavage. The tendency to form radicals is higher for alkylated pyridinium cations than for the protonated ones that can also afford closed-shell products. Theoretical calculations show that the singlet-triplet gap for transient structures with an elongated benzylic C-C bond is very low and the formation of radicals may result from mixing of these states. In addition to the notable substituent effect on the fragmentation efficiency of the cations under study, calculated results show a clear substituent effect on the singlet-triplet transitions. We also observe that triphenylphosphonium cations behave notably different. Thus, the pyridinium system that contains a p-chloro benzyl moiety loses a benzyl radical readily while the analogous triphenylphosphonium cation is very stable under the same conditions.

Journal Article↗
PubMed2002

Substituent effect and multisite protonation in the fragmentation of alkyl benzoates.

The dissociation of protonated alkyl benzoates (para H, CN, OMe and NO(2)) into protonated benzoic acids and alkyl cations was studied in the gas phase. It was found that the product ratio depends on the substituent at the para position of the phenyl ring. The substituent effect is probably the result of the formation of an ion-neutral complex intermediate that decomposes to an ion and a neutral, according to the relative proton affinities of the two moieties. The experimental results and theoretical calculations indicate that the favored protonation site in these compounds is the ester's carbonyl and that proton transfer from the phenyl ring to the ester group is very likely to occur under chemical ionization conditions. It is most probable that the carbonyl protonated form is a common intermediate in the fragmentation process, regardless of the protonation site.

Journal Article↗