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Biomedical subjects

Chang Liu

Publications and source records attributed to Chang Liu.

At least 55 records · Page 3Linked to original sources

A modular microfluidic architecture for integrated biochemical analysis.

Microfluidic laboratory-on-a-chip (LOC) systems based on a modular architecture are presented. The architecture is conceptualized on two levels: a single-chip level and a multiple-chip module (MCM) system level. At the individual chip level, a multilayer approach segregates components belonging to two fundamental categories: passive fluidic components (channels and reaction chambers) and active electromechanical control structures (sensors and actuators). This distinction is explicitly made to simplify the development process and minimize cost. Components belonging to these two categories are built separately on different physical layers and can communicate fluidically via cross-layer interconnects. The chip that hosts the electromechanical control structures is called the microfluidic breadboard (FBB). A single LOC module is constructed by attaching a chip comprised of a custom arrangement of fluid routing channels and reactors (passive chip) to the FBB. Many different LOC functions can be achieved by using different passive chips on an FBB with a standard resource configuration. Multiple modules can be interconnected to form a larger LOC system (MCM level). We demonstrated the utility of this architecture by developing systems for two separate biochemical applications: one for detection of protein markers of cancer and another for detection of metal ions. In the first case, free prostate-specific antigen was detected at 500 aM concentration by using a nanoparticle-based bio-bar-code protocol on a parallel MCM system. In the second case, we used a DNAzyme-based biosensor to identify the presence of Pb(2+) (lead) at a sensitivity of 500 nM in <1 nl of solution.

Biochemistry↗

Construction and characterization of chimeric BHIV (BIV/HIV-1) viruses carrying the bovine immunodeficiency virus gag gene.

AIM: To explore the possibility of the replacement of the gag gene between human immunodeficiency virus and bovine immunodeficiency virus, to achieve chimeric virions, and thereby gain a new kind of AIDS vaccine based on BHIV chimeric viruses. METHODS: A series of chimeric BHIV proviral DNAs differing in the replacement regions in gag gene were constructed, and then were transfected into 293T cells. The expression of chimeric viral genes was detected at the RNA and protein level. The supernatant of 293T cell was ultra centrifuged to detect the probable chimeric virion. Once the chimeric virion was detected, its biological activities were also assayed by infecting HIV-sensitive MT4 cells. RESULTS: Four chimeric BHIV proviral DNAs were constructed. Genes in chimeric viruses expressed correctly in transfected 293T cells. All four constructs assembled chimeric virions with different degrees of efficiency. These virions had complete structures common to retroviruses and packaged genomic RNAs, but the cleavages of the precursor Gag proteins were abnormal to some extent. Three of these virions tested could attach and enter into MT4 cells, and one of them could complete the course of reverse transcription. Yet none of them could replicate in MT4 cells. CONCLUSION: The replacement of partial gag gene of HIV with BIV gag gene is feasible. Genes in chimeric BHIVs are accurately expressed, and virions are assembled. These chimeric BHIVs (proviral DNA together with virus particles) have the potential to become a new kind of HIV/AIDS vaccine.

AIDS Vaccines↗

Free fatty acids increase PGC-1alpha expression in isolated rat islets.

PGC-1alpha mRNA and protein are elevated in islets from multiple animal models of diabetes. Overexpression of PGC-1alpha impairs glucose-stimulated insulin secretion (GSIS). However, it is not well known which metabolic events lead to upregulation of PGC-1alpha in the beta-cells under pathophysiological condition. In present study, we have investigated effects of chronic hyperlipidemia and hyperglycemia on PGC-1alpha mRNA expression in isolated rat islets. Isolated rat islets are chronically incubated with 0, 0.2 and 0.4 mM oleic acid/palmitic acid (free fatty acids, FFA) or 5.5 and 25 mM glucose for 72 h. FFA dose-dependently increases PGC-1alpha mRNA expression level in isolated islets. FFA also increases PGC-1alpha expression in mouse beta-cell-derived beta TC3 cell line. In contrast, 25 mM glucose decreases expression level of PGC-1alpha. Inhibition of PGC-1alpha by siRNA improves FFA-induced impairment of GSIS in islets. These data suggest that hyperlipidemia and hyperglycemia regulate PGC-1alpha expression in islets differently, and elevated PGC-1alpha by FFA plays an important role in chronic hyperlipidemia-induced beta-cell dysfunction.

Animals↗

Spectroscopic and structural characterization of chlorine loading effects on Mo/Si:Ti catalysts in oxidative dehydrogenation of ethane.

The structural changes induced in a silica-titania mixed-oxide support (1:1 molar ratio) by chlorine addition at different loading levels, their relation to the structural characteristics of supported MoOx species over the support, and their correlation with ethane oxidative dehydrogenation (ODH) activity have been examined. The molybdenum and chlorine precursors are incorporated into the Si/Ti support network as it forms during gelation by using a "one-pot" modified sol-gel/coprecipitation technique. In situ X-ray diffraction during calcination shows the Si/Ti 1:1 mixed-oxide support is in a state of nanodispersed anatase titania over amorphous silica. With the addition of molybdenum and chlorine modifier, this anatase feature becomes more pronounced, indicating a decreased dispersion of titania. The effective titania surface area on the chlorine-doped Si:Ti support obtained from 2-propanol temperature-programmed reaction supports this observation. Raman spectra of dehydrated samples point to an enhanced interaction of MoOx species with silica at the expense of titania. X-ray photoelectron spectroscopic results show that, without forming a molybdenum chloride, the presence of chlorine significantly alters the relative surface concentration of Si vs Ti, the electronic structure of the surface MoOx species, and the oxygen environment around supported MoOx species in the Si/Ti network. Secondary ion mass spectrometry detected the existence of SiCl fragments from the mass spectra, which provides molecular insight into the location of chlorine in Mo/Si:Ti catalysts. The observed increase in ethane ODH selectivity with chlorine modification may be ascribed to the MoOx species sharing more complex ligands with silica and titania with the indirect participation of chlorine. Steady-state isotopic transient kinetic analysis (SSITKA) is used to to examine the oxygen insertion and exchange mechanisms. The catalysts show very little oxygen exchange with the gas phase in the absence of a reaction medium. During the steady-state ODH reaction, lattice oxygen appears to be the primary source of oxygen in the formation of water and CO2.

Journal Article↗

Methods for fabricating microarrays of motile bacteria.

Motile bacterial cell microarrays were fabricated by attaching Escherichia coli K-12 cells onto predesigned 16-mercaptohexadecanoic acid patterned microarrays, which were covalently functionalized with E. coli antibodies or poly-L-lysine. By utilizing 11-mercaptoundecyl-penta(ethylene glycol) or 11-mercapto-1-undecanol as passivating molecules, nonspecific binding of E. coli was significantly reduced. Microcontact printing and dip-pen nanolithography were used to prepare microarrays for bacterial adhesion, which was studied by optical fluorescence and atomic force microscopy. These data indicate that single motile E. coli can be attached to predesigned line or dot features and binding can occur via the cell body or the flagella of bacteria. Adherent bacteria are viable (remain alive and motile after adhesion to patterned surface features) for more than four hours. Individual motile bacterial cells can be placed onto predesigned surface features that are at least 1.3 microm in diameter or larger. The importance of controlling the adhesion of single bacterial cell to a surface is discussed with regard to biomotor design.

Bacteria↗

Multifunctional probe array for nano patterning and imaging.

This letter reports the design, fabrication, and testing of a multifunctional scanning probe array for nanoscale imaging and patterning. The probe array consists of multiple cantilever probes, with each probe being able to perform a dedicated function such as scanning probe lithography (e.g., dip pen nanolithography and scanning probe contact printing) or scanning probe microscopy (e.g., atomic force microscopy and lateral force microscopy). The bending states of each probe can be controlled by using an integrated thermal electric actuator so that it is possible to engage any individual probe(s) independently for writing or imaging purposes. The multifunctional probe array is therefore capable of performing a rich variety of operations with minimal chemical crosstalk and high registration accuracy. It will eliminate the need for probe chip exchanges and increase the operational efficiency. The probe tips in a given array may be made of different materials. Further, the tip and cantilever may be made of different materials for a given probe. In this work, we focus on the development of a probe array consisting of dip pen nanolithography probes, scanning probe contact printing probes (of various tip sizes), and scanning probe microscopy probes.

Journal Article↗

Clusters of adjacent and similarly expressed genes across normal human tissues complicate comparative transcriptomic discovery.

Transcriptomic techniques are valuable tools with which to validate genetic and biological hypotheses and are now widely available for research. However, with the exception of tumor biology, comparative genomics analyses have been difficult to use as discovery engines to describe biologically relevant expression changes. We propose that physical proximity of human genes correlates with similar mRNA expression, so that increased expression might include a disease-relevant gene and many other genes in the adjacent region. To increase the efficiency of combining susceptibility gene mapping and interpretation of transcriptomics, we developed a method to identify clusters of adjacent and similarly expressed genes. Gene expression profiles for 28,945 genes across 101 normal human tissues were obtained from the Gene Logic BioExpress system. The expression similarity for genes in sliding-windows was measured using average pair-wise Pearson correlation coefficients. We identified 187 clusters (p < 10e-4) of co-regulated genes, including 2648 genes, or 9.1% of all genes considered and termed these "clusters of adjacent and similarly expressed genes" (CASEGs). Genes in 15 (8.2%) of these clusters demonstrate a significant co-expression enrichment (p < 10e-10). This study demonstrates the coordinate expression of neighboring genes and provides a comprehensive view of expression-based compartmentalization of the human genome, which can be overlaid on genetic susceptibility gene maps.

Gene Expression Profiling↗

[Influence of macrophages on the expression of vascular endothelial growth factor receptor mRNA, homeobox B2 mRNA, and integrin alpha nu beta3 in vascular endothelial strain].

OBJECTIVE: To investigate the influence of macrophages on the expression of the vascular endothelial growth factor (VEGF) receptor (KDR) mRNA, homeobox B2 (HOXB2) mRNA, and integrin alpha nu beta3 in vitro in vascular endothelial strain. METHODS: Human umbilical vein cells (ECV304) were cultured in vitro and divided into 4 groups, i.e. (1) ECV304 group, (2) ECV304 + conA group [with conA (25 microg/ml in culture) added to ECV304], (3) ECV304 + U937 group (with 1 x 10(5)/ml of U937 cells added to 1 x 10(5)/ml ECV 304), (4) ECV304 + U937 + conA group [with 1 x 10(5)/ml of U937 cells and conA (25 microg/ml in culture)] groups. Forty-eight hours after culturing, the expression of integrin receptor alpha nu beta3 and the changes in the expression of KDR mRNA and HOXB2 mRNA in each group were determined by immunofluorescent technique and RT-PCR, respectively. RESULTS: The expression of integrin receptor alpha nu beta3, KDR mRNA, and HOXB2 mRNA in ECV304 group were 6.7 +/- 1.5, 0.633 +/- 0.012, and 0.674 +/- 0.004, respectively, while those in ECV304 + U937 + conA group (10.2 +/- 1.7, 0.879 +/- 0.003, 0.947 +/- 0.003) were obviously more upregulated when compared with those in ECV304 group (P < 0.01). No difference in the above indices was found between ECV304 and ECV304 + conA, ECV304 + U937 groups (P > 0.05). CONCLUSION: Macrophages activated by ConA can accelerate the proliferation, migration and adhesion to the basement membrane matrix of vascular endothelial cells through the influence on the expression of KDR mRNA, HOXB2 mRNA and integrin alpha nu beta3, and through this pathway the angiogenesis is modulated.

Cells, Cultured↗

[Expression of urotensin II and G-protein coupled receptor 14 mRNA in human pheochromocytoma tissues].

OBJECTIVE: To investigate the expression of urotensin II (U II) and G-protein coupled receptor 14 (GPR14) mRNA in human pheochromocytoma tissues. METHODS: Total RNA from normal adrenal and pheochromocytoma tissues was extracted. The reverse transcription-polymerase chain reaction method was used to evaluate the levels of U II and GPR14 mRNA expression in human pheochromocytoma tissues. RESULTS: There was no significant difference of U II and GPR14 mRNA expression between normal adrenal cortex and medulla. The expression of U II and GPR14 mRNA in pheochromocytoma was significantly lower than that in normal adrenal cortex and medulla (P < 0.05). The expression of GPR14 mRNA in adrenal pheochromocytomas was significantly lower than that of extra-adrenal pheochromocytomas (P < 0.05). CONCLUSION: U II and GPR14 may play a role in the pathogenesis and hypertension regulating of pheochromocytoma.

Adrenal Cortex↗

[CT and MRI features of diseases involving masticator spaces].

OBJECTIVE: This is a study on the CT and MRI features of diseases involving the masticator spaces; the purpose is to improve the diagnostic accuracy. METHODS: Fifty-seven cases involving the masticator spaces were collected, among which, 11 cases were originated from the masticator space, another 46 cases were secondary invasion from the adjacent structures, including 18 cases from the buccal mucosa, 10 from the nasopharynx, 5 from the gingiva, 3 from the parotid gland, 6 from the maxillary sinus, 1 from the intracranial location, 2 from the palate and 1 from the orbit. The CT and MRI features of the masticator space involvement were analysed. RESULTS: Masticator space involvement is visualized on CT and MRI as effacement of the fat plane, swelling of the masticatory muscles, and erosion of the mandibular ramus. Disease from surrounding structures can invade the masticator space via the pterygopalatine fossa, the buccal space immediately anterior to the ramus, the foramen ovale, or by way of direct invasion. CONCLUSION: Masticator space involvement is not uncommon in the maxillofacial diseases, which must be noticed in the imaging diagnosis.

Adolescent↗

Micro magnetic stir-bar mixer integrated with parylene microfluidic channels.

Previously, we reported a micro magnetic stir-bar mixer driven by an external rotating magnetic field and its rapid mixing performance in polydimethyl-siloxane (PDMS) channels. The PDMS piece with embedded fluid channels were manually aligned to a glass substrate and assembled. In this paper, we report the fabrication and testing results of a micro magnetic stir-bar monolithically integrated in parylene surface-micromachined channels with improved design features, including small tolerance of the stir-bar to channel wall (10 microm). Using of parylene based microchannels with improved design not only provides improved mixing, but also eliminates certain problems associated with PDMS-based channels. For example, porosity of PDMS causes evaporation and absorption of chemicals and thus channels made of PDMS are prone to cross-contamination. We have also demonstrated that the magnetic stir-bar can be used to pump liquid in micro channels.

Dimethylpolysiloxanes↗

Two-dimensional nonlinear wavelet compression of ion mobility spectra of chemical warfare agent simulants.

Ion mobility spectrometry (IMS) affords miniaturized hand-held devices that can be used for monitoring and remote measurement. Because such instruments have limits on storage capacity or bandwidth for wireless transmission, data compression is important. Furthermore, all instruments should be operated with the fastest possible sampling rates because a signal-to-noise gain can be achieved by wavelet compression. Linear wavelet compression (LWC) applied to IMS data may cause peak distortion when the spectra are reconstructed. Nonlinear wavelet compression (NLWC) precisely preserves the peak location (i.e., drift time), height, and shape. IMS data of three chemical warfare simulants, dimethyl methylphosphonate, triethyl phosphate, and dipropyleneglycol monomethyl ether, were collected from an Ion Track ITEMISER and a Graseby Ionics detector CAM. Two-dimensional NLWC was used to compress the IMS data in the drift time and data acquisition dimensions on IMS data of chemical warfare simulants. NLWC was applied to achieve a compression factor of 1/128 with relative error of root-mean-square of <0.25% in the reconstructed spectra. A method was also developed and evaluated for optimizing compression.

Journal Article↗

Dexamethasone and dextran 40 treatment of 32 patients with severe acute pancreatitis.

AIM: Based on the pathogenesis of severe acute pancreatitis and our experimental studies, to investigate the effect of dexamethasone and dextran in treatment of patients with severe acute pancreatitis. METHODS: Thirty-two patients with severe acute pancreatitis were treated with 0.5-1 mg/kg per day dexamethasone for 3-5 d, and 500-1,000 mL/d of dextran 40 for 7 d, besides the routine therapy. RESULTS: After 4-8 h of treatment, abdominal pain began to be relieved; range of tenderness began to be localized in 27 patients. They were cured with nonsurgical treatment. Five of them were deteriorated, and treated with surgery. Four patients in this group died. CONCLUSION: Dexamethasone and dextran 40 block the pathologic process of severe acute pancreatitis through inhibition of inflammatory mediators and improvement of microcirculation disorders respectively.

Adult↗

Complete genome sequence of the apicomplexan, Cryptosporidium parvum.

The apicomplexan Cryptosporidium parvum is an intestinal parasite that affects healthy humans and animals, and causes an unrelenting infection in immunocompromised individuals such as AIDS patients. We report the complete genome sequence of C. parvum, type II isolate. Genome analysis identifies extremely streamlined metabolic pathways and a reliance on the host for nutrients. In contrast to Plasmodium and Toxoplasma, the parasite lacks an apicoplast and its genome, and possesses a degenerate mitochondrion that has lost its genome. Several novel classes of cell-surface and secreted proteins with a potential role in host interactions and pathogenesis were also detected. Elucidation of the core metabolism, including enzymes with high similarities to bacterial and plant counterparts, opens new avenues for drug development.

Animals↗

Vowel formant discrimination for high-fidelity speech.

The goal of this study was to establish the ability of normal-hearing listeners to discriminate formant frequency in vowels in everyday speech. Vowel formant discrimination in syllables, phrases, and sentences was measured for high-fidelity (nearly natural) speech synthesized by STRAIGHT [Kawahara et al., Speech Commun. 27, 187-207 (1999)]. Thresholds were measured for changes in F1 and F2 for the vowels /I, epsilon, ae, lambda/ in /bVd/ syllables. Experimental factors manipulated included phonetic context (syllables, phrases, and sentences), sentence discrimination with the addition of an identification task, and word position. Results showed that neither longer phonetic context nor the addition of the identification task significantly affected thresholds, while thresholds for word final position showed significantly better performance than for either initial or middle position in sentences. Results suggest that an average of 0.37 barks is required for normal-hearing listeners to discriminate vowel formants in modest length sentences, elevated by 84% compared to isolated vowels. Vowel formant discrimination in several phonetic contexts was slightly elevated for STRAIGHT-synthesized speech compared to formant-synthesized speech stimuli reported in the study by Kewley-Port and Zheng [J. Acoust. Soc. Am. 106, 2945-2958 (1999)]. These elevated thresholds appeared related to greater spectral-temporal variability for high-fidelity speech produced by STRAIGHT than for formant-synthesized speech.

Adult↗

Formant discrimination in noise for isolated vowels.

Formant discrimination for isolated vowels presented in noise was investigated for normal-hearing listeners. Discrimination thresholds for F1 and F2, for the seven American English vowels /i, I, epsilon, ae, [symbol see text], a, u/, were measured under two types of noise, long-term speech-shaped noise (LTSS) and multitalker babble, and also under quiet listening conditions. Signal-to-noise ratios (SNR) varied from -4 to +4 dB in steps of 2 dB. All three factors, formant frequency, signal-to-noise ratio, and noise type, had significant effects on vowel formant discrimination. Significant interactions among the three factors showed that threshold-frequency functions depended on SNR and noise type. The thresholds at the lowest levels of SNR were highly elevated by a factor of about 3 compared to those in quiet. The masking functions (threshold vs SNR) were well described by a negative exponential over F1 and F2 for both LTSS and babble noise. Speech-shaped noise was a slightly more effective masker than multitalker babble, presumably reflecting small benefits (1.5 dB) due to the temporal variation of the babble.

Acoustic Stimulation↗

The Cryptosporidium oocyst wall protein is a member of a multigene family and has a homolog in Toxoplasma.

Coccidian parasites are transmitted via a fecal oocyst stage that is exceptionally resistant to environmental stress and harsh chemical treatments, which allows parasites to stably persist outside a host. Because of its oocyst durability Cryptosporidium parvum is a significant water- and food-borne pathogen of humans, as well as animals of agricultural importance. To date, only one apicomplexan oocyst membrane protein has been identified, Cryptosporidium oocyst wall protein 1 (COWP1). COWP1 has a highly cysteine-rich periodicity due to arrays of two apicomplexan-specific motifs, designated the type I and type II domains. In this study, exhaustive BLAST screening of a complete C. parvum genome sequence database resulted in identification of eight additional genes encoding similar arrays of cysteine-rich type I and/or type II domains. Transcript expression analysis revealed that all COWP genes are abundantly expressed at a time when developing oocysts are observed, roughly 48 to 72 h after inoculation of in vitro cultures. A monoclonal antibody recognizing COWP8 specifically localized to the C. parvum oocyst wall, supporting the hypothesis that multiple COWPs play a role in the oocyst wall structure. BLAST screening of the Toxoplasma gondii genome sequence database resulted in identification of a gene encoding at least one COWP homolog (TgOWP1), and this multiexon sequence information was used to isolate a full-length cDNA. Exhaustive screening of Plasmodium sp. genome sequence databases by using COWP genes as BLAST queries failed to detect similar proteins in PLASMODIUM: We therefore propose that the COWP family of proteins have a structural role in apicomplexan species that produce durable shed cysts capable of surviving environmental stress.

Amino Acid Sequence↗