Biomedical subjects

Christian J Doonan

Publications and source records attributed to Christian J Doonan.

10 recordsLinked to original sources

PubMed2007

X-ray absorption spectroscopic characterization of the molybdenum site of Escherichia coli dimethyl sulfoxide reductase.

Structural studies of dimethyl sulfoxide (DMSO) reductases were hampered by modification of the active site during purification. We report an X-ray absorption spectroscopic analysis of the molybdenum active site of Escherichia coli DMSO reductase contained within its native membranes. The enzyme in these preparations is expected to be very close to the form found in vivo. The oxidized active site was found to have four Mo-S ligands at 2.43 A, one Mo=O at 1.71 A, and a longer Mo-O at 1.90 A. We conclude that the oxidized enzyme is a monooxomolybdenum(VI) species coordinated by two molybdopterin dithiolenes and a serine. The bond lengths determined for E. coli DMSO reductase are very similar to those determined for the well-characterized Rhodobacter sphaeroides DMSO reductase, suggesting similar active site structures for the two enzymes. Furthermore, our results suggest that the form found in vivo is the monooxobis(molybdopterin) species.

Binding Sites↗

PubMed2006

Structure of the active site of sulfite dehydrogenase from Starkeya novella.

In this paper, we report the results of molybdenum K-edge X-ray absorption studies performed on the oxidized and reduced active sites of the sulfite dehydrogenase from Starkeya novella. Our results provide the first direct structural information on the active site of the oxidized form of this enzyme and confirm the conclusions derived from protein crystallography that the molybdenum coordination is analogous to that of the sulfite oxidases. The molybdenum atom of the oxidized enzyme is bound by two Mo=O ligands at 1.73 A and three thiolate Mo-S ligands at 2.42 A, whereas the reduced enzyme has one oxo at 1.74 A, one long oxygen at 2.19 A (characteristic of Mo-OH2), and three Mo-S ligands at 2.40 A.

Alphaproteobacteria↗

PubMed2006

Models for the molybdenum hydroxylases: synthesis, characterization and reactivity of cis-oxosulfido-Mo(VI) complexes.

Atom transfer reactions have been employed to convert Tp(i)(Pr)MoO(2)(OAr) into monomeric cis-oxosulfido-Mo(VI) and dimeric mu-disulfido-Mo(V) species, [Tp(i)(Pr)MoOS(OAr)](n)() (Tp(i)(Pr) = hydrotris(3-isopropylpyrazol-1-yl)borate; OAr = phenolate or naphtholate derivative; n = 1 and 2, respectively). Dark red, monomeric Tp(i)(Pr)MoOS(OAr) complexes contain distorted octahedral cis-oxosulfido-Mo(VI) centers, with d(Mo=O) = 1.692(5) A, d(Mo=S) = 2.132(2) A, and angle(O=Mo=S) = 103.68(16) degrees for the 2-sec-butylphenolate derivative. Dark red-purple, dimeric [Tp(i)(Pr)MoOS(OAr)](2) complexes undergo S-S bond cleavage forming monomeric oxosulfido-Mo(VI) species in solution. In the solid state, the 3,5-di-tert-butylphenolate derivative exhibits a centrosymmetric structure, with distorted octahedral anti oxo-Mo(V) centers bridged by a disulfido-kappaS,kappaS' ligand. Hydrolysis of the oxosulfido-Mo(VI) complexes results in the formation of [Tp(i)(Pr)MoO](2)(mu-S(2))(mu-O). In anaerobic solutions, certain oxosulfido-Mo(VI) complexes convert to molybdenyl complexes bearing bidentate 2-mercaptophenolate or related naphtholate ligands formed via intramolecular attack of the sulfido ligand on a coligand C-H group. The oxosulfido-Mo(VI) complexes serve as precursors to biologically relevant Mo(V) and heterobimetallic MoO(mu-S)Cu species and undergo a range of biomimetic reactions.

Mixed Function Oxygenases↗

PubMed2006

Molecular mimicry in mercury toxicology.

Molecular mimicry occurs when one molecular entity is "mistaken" for another by cellular or other biological processes, and is thought to arise from structural similarities between the two molecules in question. It has been postulated by others to be important in the mechanism of uptake of toxic metal species into living tissues. A widely accepted example is the transport of methylmercury-cysteine species, which are thought to mimic the amino acid methionine. We have used mass spectrometry and mercury L(III)-edge X-ray absorption spectroscopy to understand the solution structure of complexes between methylmercury and cysteine. With a view to understanding the basis of the suggested molecular mimicry mechanisms, we have used computational chemistry to compare the structure of methionine with that of the dominant solution species L-cysteinato(methyl)mercury(II), and the structure of cystine with that of mercury(II) bis-L-cysteineate. We conclude that the structural similarities between metal compounds and natural products are insufficient to support a mechanism based on molecular mimicry, but instead, mechanisms involving a less-specific mimicry based on similarity with the L(alpha) region of the amino acid part of the molecule.

Amino Acids↗

PubMed2005

Synthesis and characterisation of second-generation metallodithiolene complexes of the type [Tp*ME(dithiolene)](M=Mo, W; E=O, S) and a novel 'organoscorpionate' complex of tungsten.

Paramagnetic, chalcogenido-M(v) dithiolene complexes, [Tp*ME{S2C2(CO2Me)2}][M=Mo, E=O, S; M=W, E=O, S; Tp*=hydrotris(3,5-dimethylpyrazol-1-yl)borate] are generated in the reactions of dimethyl acetylenedicarboxylate (DMAC) and the sulfur-rich complexes NEt4[Tp*MoS(S4)] and NEt4[Tp*WS3]; the oxo complexes result from hydrolysis of the initial sulfido products. As well, a novel 'organoscorpionate' complex, [W{S2C2(CO2Me)2}{SC2(CO2Me)2-Tp*}], has been isolated from the reactions of NEt4[Tp*WS3] with excess DMAC. Complexes , and have been isolated and characterised by microanalytical, mass spectrometric, spectroscopic and (for and) X-ray crystallographic techniques. Complexes and have been partially characterised by mass spectrometry and IR and EPR spectroscopy. Six-coordinate, distorted-octahedral contains a terminal sulfido ligand (W=S=2.108(3)A), a bidentate dithiolene ligand (S-Cav=1.758 A, C=C=1.332(10)A) and a fac-tridentate Tp* ligand. Seven-coordinate contains a planar, bidentate dithiolene ligand (S-Cav=1.746 A, C=C=1.359(5)A) and a novel pentadentate 'organoscorpionate' ligand formed by the melding of DMAC, sulfido and trispyrazolylborate units. The latter is coordinated through two pyrazolyl N atoms (kappa2-N,N') and a tridentate kappa3-S,C,C' unit appended to N-beta of the third (uncoordinated) pyrazolyl group. The second-generation [Tp*ME(dithiolene)] complexes represent a refinement on first-generation [Tp*ME(arene-1,2-dithiolate)] complexes and their synthesis affords an opportunity to compare and contrast the electronic structures of true vs. pseudo-dithiolene ligands in otherwise analogous complexes.

Journal Article↗

PubMed2005

cis-Dioxomolybdenum(VI) and oxo(phosphine oxide)molybdenum(IV) complexes: steric and electronic fine-tuning of cis-[MoOS]2+ precursors.

The complexes cis-Tp(iPr)Mo(VI)O2(OAr) (Tp(iPr) = hydrotris(3-isopropylpyrazol-1-yl)borate, -OAr = phenolate or naphtholate derivative) are formed upon metathesis of Tp(iPr)MoO2Cl and HOAr/NEt3 in dichloromethane. The orange, diamagnetic dioxo-Mo(VI) complexes exhibit strong nu(MoO2) IR bands at ca. 930 and 905 cm(-1) and NMR spectra indicative of C(s) symmetry. They undergo electrochemically reversible, one-electron reductions at potentials in the range -0.714 to -0.855 V vs SCE (in MeCN) and react with PEt3 to produce Tp(iPr)Mo(IV)O(OAr)(OPEt3). The green, diamagnetic oxo-Mo(IV) complexes display a single nu(MoO) IR band at ca. 950 cm(-1) and exhibit NMR spectra indicative of C1 symmetry. The crystal structures of eight dioxo-Mo(VI) complexes have been determined to assess the degree of frontal (O3-donor face) steric congestion at the Mo center, to identify complexes amenable to conversion into monomeric oxosulfido-Mo(VI) derivatives. The complexes display distorted octahedral geometries, with a cis arrangement of terminal oxo ligands, with d(Mo=O)av = 1.694 A and angle(MoO2)av = 103.4 degrees. Maximal frontal steric congestion is observed in the 2-phenolate derivatives, and these are identified as precursors for strictly monomeric(solid and solution state) oxosulfido-Mo(VI) counterparts.

Journal Article↗

PubMed2005

Using softer X-ray absorption spectroscopy to probe biological systems.

Many inorganic species are now recognized as being essential for life, including many forms of sulfur, phosphate and numerous classes of metal ions. For example, recent progress in the fields of biochemistry and biology has pointed out the critical importance of sulfur in the biosynthesis of vital cofactors and active sites in proteins, and in the complex reaction mechanisms often involved. Special attention has also been drawn to the diverse roles of alkaline (Na(+), K(+)) and alkaline earth (Mg(2+), Ca(2+)) metal ions in mediating the activity of RNA, proteins and many processes in living cells. While the general effect of these ions in biology is mostly understood, information on their detailed role is deficient. Here the application of softer X-ray absorption spectroscopy (XAS) to probe the local structural and electronic environment of such ions within their biological complexes and during physiological reactions is discussed. In addition, the required experimental set-up and the difficulties associated with conducting softer XAS experiments on biological samples are presented.

Absorptiometry, Photon↗

PubMed2005

Oxygen atom transfer in models for molybdenum enzymes: isolation and structural, spectroscopic, and computational studies of intermediates in oxygen atom transfer from molybdenum(VI) to phosphorus(III).

Intermediates in the oxygen atom transfer from Mo(VI) to P(III), [Tp(iPr)MoOX(OPR3)] (Tp(iPr) = hydrotris(3-isopropylpyrazol-1-yl)borate; X = Cl-, phenolates, thiolates), have been isolated from the reactions of [Tp(iPr)MoO2X] with phosphines (PEt3, PMePh2, PPh3). The green, diamagnetic oxomolybdenum(IV) complexes possess local C(1) symmetry (by NMR spectroscopy) and exhibit IR bands assigned to nu(Mo==O) (approximately 950 cm(-1)) and nu(P==O) (1140-1083 cm(-1)) vibrations. The X-ray crystal structures of [Tp(iPr)MoOX(OPEt3)] (X = OC6H4-2-sBu, SnBu), [Tp(iPr)MoO(OPh)(OPMePh2)], and [Tp(iPr)MoOCl(OPPh3)] have been determined. The monomeric complexes exhibit distorted octahedral geometries, with coordination spheres composed of tridentate fac-Tp(iPr) and mutually cis monodentate terminal oxo, phosphoryl (phosphine oxide), and monoanionic X ligands. The electronic structures and stabilities of the complexes have been probed by computational methods, with the three-dimensional energy surfaces confirming the existence of a low-energy steric pocket that restricts the conformational freedom of the phosphoryl ligand and inhibits complete oxygen atom transfer. The reactivity of the complexes is also briefly described.

Borates↗

PubMed2005

High-resolution X-ray emission spectroscopy of molybdenum compounds.

High-resolution molybdenum K-edge X-ray emission spectroscopy (XES) was used to characterize the K beta(4) and K beta' ' valence-to-core transition bands in the oxo-Mo compounds K(2)MoO(4), MoO(S(2)CNEt(2))(2), and MoO(2)(S(2)CNEt(2))(2). The K beta(4) and K beta' ' emission bands are attributed to transitions to the Mo 1s core hole from molecular orbitals possessing primarily molybdenum 4d and oxygen 2s character, respectively. This communication describes the first assignment of the K beta' ' interatomic band in the emission spectra of molybdenum complexes. Additionally, the K beta(4) and K beta' 'transitions are shown to be sensitive to the chemical and electronic environment of the metal, suggesting that high-resolution XES might be an effective method for elucidating the nature of the molybdenum centers in biological systems.

Molecular Structure↗

PubMed2005

Nature of the catalytically labile oxygen at the active site of xanthine oxidase.

In this paper we report the results of molybdenum K-edge X-ray absorption studies performed on the oxidized active site of xanthine oxidase at pH 6 and 10. These results indicate that the active site possesses one terminal oxygen ligand (Mo=O), two thiolate ligands (Mo-S), one terminal sulfido ligand (Mo=S), and one Mo-OH moiety. EXAFS analysis demonstrates that the Mo-OH bond shortens from 1.97 A at pH 6 to 1.75 A at pH 10, which is consistent with the generation of a Mo-O- moiety. This study provides convincing structural evidence that the catalytic oxygen donor at the oxidized active site of xanthine oxidase is Mo-OH rather than the Mo-OH2 ligation previously suggested by X-ray crystallography. These results support a mechanism initiated by base-assisted nucleophilic attack of the substrate by Mo-OH.

Binding Sites↗