Biomedical subjects

Christian Remenyi

Publications and source records attributed to Christian Remenyi.

6 recordsLinked to original sources

PubMed2006

Calculation of zero-field splitting parameters: comparison of a two-component noncolinear spin-density-functional method and a one-component perturbational approach.

Two different sets of approaches for the density-functional calculation of the spin-orbit contributions to zero-field splitting (ZFS) parameters of high-spin systems have been implemented within the same quantum chemistry code ReSpect and have been validated and compared for a series of model systems. The first approach includes spin-orbit coupling variationally in a two-component calculation, using either an all-electron Douglas-Kroll-Hess ansatz or two-component relativistic pseudopotentials. The ZFS parameters are computed directly from energy differences between different relativistic states. Additionally, an approximate second-order perturbation theory approach has been implemented, based on nonrelativistic or scalar relativistic wave functions. For a series of group 16 triplet diatomics and for the octet GdH3 molecules, two-component density functional calculations underestimate the zero-field splitting D systematically by a factor of 2. This may be rationalized readily by the incomplete description of states with absolute value MJ < J by a single-determinantal wave function built from two-component spinors. In the case of two 3d transition metal complexes and for GdH3, the results depend furthermore sensitively on exchange-correlation functional. Results of the alternative one-component approach agree strikingly with the two-component data for systems with small spin-orbit effects and start to deviate from them only for heavier systems with large spin-orbit effects. These results have fundamental implications for the achievable accuracy of one-component density-functional approaches used widely to compute ZFS parameters in the field of molecular magnetism. Possible refinements of both one-and two-component approaches are discussed.

Journal Article↗

PubMed2006

Density functional study of electron paramagnetic resonance parameters and spin density distributions of dicopper(I) complexes with bridging azo and tetrazine radical-anion ligands.

There exists a growing class of dinuclear complexes with bridging radical-anion ligands that is of interest both for bioinorganic and for supermolecular chemistry. Their bonding situation as well as chemical and spectroscopic properties are not described adequately by standard models such as the ligand-field theory. For rational design of complexes with desired properties, it is thus necessary to understand better the interrelations between electronic structure, spin density, and electron paramagnetic resonance (EPR) parameters in dinuclear systems with redox-active bridging ligands and to evaluate the performance of density functional methods in their description. As particularly suitable, experimentally well-characterized representatives, a series of dinuclear copper(I) complexes with azo or tetrazine bridge ligands have been studied here by different density functional methods. To reproduce the available experimental metal hyperfine couplings, the inclusion of spin-orbit effects into the calculations is necessary. An unusual direction of the dependence of computed hyperfine couplings on an exact-exchange admixture into the exchange-correlation functional may be understood from a McConnell-type spin polarization of the sigma-framework of the bridge. Ligand nitrogen hyperfine couplings are also compared with experiment where available. Electronic g-tensors are reproduced well by the calculations and have been analyzed in detail in terms of atomic spin-orbit contributions and electronic excitations.

Journal Article↗

PubMed2005

Where is the spin? Understanding electronic structure and g-tensors for ruthenium complexes with redox-active quinonoid ligands.

Understanding the bonding in transition metal complexes with redox-active ligands is a major challenge, for example in redox catalysis or in bioinorganic chemistry. In this work, electronic g-tensors, spin-density distributions, and electronic structure have been studied by different density functional methods for an extended series of complexes [Ru(acac)2(L)]n (n = -1, 0, +1; L = redox-active o-quinonoid ligand). Comparison is made with experimental g-tensors and g-tensor-based oxidation-state assignments for a number of experimentally studied examples, using both gradient-corrected (BP86) and hybrid functionals (B3LYP, BHLYP) representing a range of exact-exchange admixtures. Reasonable, albeit not perfect, agreement with experimental g-tensors is obtained in one-component DFT calculations with hybrid functionals. Analyses of spin densities confirm the assignment of the cationic complexes as predominantly d5-Ru(III) with a neutral quinonoid ligand. However, this conclusion is obtained only after inclusion of the appreciable spin polarization of the unrestricted determinant, while the singly occupied molecular orbital (SOMO) is localized more on the acac ligands. The anionic complexes turn out to be approximately halfway between a d6-Ru(II)/semiquinone and a d5-Ru(III)/catecholate formulation, but again only after taking into account the extensive spin polarization. Even the previous assignment of the neutral parent systems as d5-Ru(III)/semiquinone is not accurate, as a d6-Ru(II)/quinone resonance structure contributes to some extent. Very unusual trends in the spin contamination of the Kohn-Sham determinant with increasing exact-exchange admixture in some of the cationic complexes have been traced to an interplay between spin delocalization and spin polarization.

Electrons↗

PubMed2005

Comparative density-functional study of the electron paramagnetic resonance parameters of amavadin.

Electronic g tensors and hyperfine coupling tensors have been calculated for amavadin, an unusual eight-coordinate vanadium(IV) complex isolated from Amanita muscaria mushrooms. Different density-functional methods have been compared, ranging from local via gradient-corrected to hybrid functionals with a variable Hartree-Fock exchange admixture. For both electron paramagnetic resonance (EPR) properties, hybrid functionals with an appreciable exact-exchange admixture provide the closest agreement with experimental data. Second-order spin-orbit corrections provide non-negligible contributions to the 51V hyperfine tensor. The orientation of g and A tensors relative to each other also depends on spin-orbit corrections to the A tensor. A rationalization for the close resemblance of the EPR parameters of amavadin to those of the structurally rather different vanadyl complexes is provided, based on the nature of the relevant frontier orbitals.

Alanine↗

PubMed2002

Density functional calculations of electronic g-tensors for semiquinone radical anions. The role of hydrogen bonding and substituent effects.

A recently developed density functional approach has been used to carry out a systematic computational study of electronic g-tensors for a series of 1,4-semiquinone radical anions. Good agreement with high-field EPR data in frozen 2-propanol is achieved only after taking into account the significant reduction of g-tensor anisotropy caused by hydrogen bonding to solvent molecules. The comparison of various model systems for the first solvation shell suggests two hydrogen bonds from 2-propanol molecules to each of the carbonyl groups of the radical anions, and one additional hydrogen bond to each of the methoxy groups in ubiquinone systems. 2-Propanol makes stronger hydrogen bonds than water and thus influences g-tensor anisotropy more strongly. Substituent effects at the semiquinone are reproduced quantitatively by the calculations. The g-tensor anisotropy is influenced significantly by the conformations of methyl and methoxy substituents, with opposite contributions. Analyses and interpretations of the interrelations between structure, bonding, and spectroscopic data are provided. The relevance of the computational results for the EPR spectroscopy of semiquinone radical anions in photosynthetic reaction centers is discussed.

1-Propanol↗

PubMed2002

On the regioselectivity of the cyclization of enyne-ketenes: a computational investigation and comparison with the Myers-Saito and Schmittel reaction.

The Moore (C(2)-C(7)) cyclization and the alternative C(2)-C(6) cyclization of enyne-ketenes belong to the family of biradical cyclization reactions such as the Bergman reaction of ene-diynes, both the cyclizations of enyne-allenes and enyne-cumulenes. The latter garnered substantial interest due to their antitumor efficacy. The mechanisms of both cyclization modes of enyne-ketenes are still unclear, but as the enyne-ketenes can formally be regarded as heteroanalogues of enyne-allenes, both cyclizations are expected to react via biradical routes. Nevertheless, as shown recently for cyclic allenes, the substitution of a methylene group by oxygen can lead to different energetic ordering of the electronic states of the key intermediates. To elucidate the mechanism, the present work investigates the course of both cyclization modes for various model compounds. To reveal general motifs for the large family of biradical cyclizations, a comparison with enyne-allenes is performed.

Journal Article↗