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Christopher M Hadad

Publications and source records attributed to Christopher M Hadad.

At least 37 records · Page 2Linked to original sources
PubMed2005

Superoxide radical anion adduct of 5,5-dimethyl-1-pyrroline N-oxide (DMPO). 2. The thermodynamics of decay and EPR spectral properties.

The formation of the superoxide radical anion (O2*-) adduct of the nitrone 5,5-dimethyl-1-pyrroline N-oxide (DMPO) as detected by electron paramagnetic resonance (EPR) spectroscopy is one of the most common techniques for O2*- detection in chemical and biological systems. However, the nature of DMPO-O2H has confounded spin-trapping investigators over the years, since there has been no independently synthesized DMPO-O2H to date. A density functional theory (DFT) approach was used to predict the isotropic hyperfine coupling constants arising from the N, beta-H, and gamma-H nuclei of DMPO-O2H using explicit interactions with water molecules as well as via a bulk dielectric effect employing the polarizable continuum model (PCM). Theoretical calculation on the thermodynamics of DMPO-O2H decay shows favorable intramolecular rearrangement to form a nitrosoaldehyde and a hydroxyl radical as products, consistent with experimental observations. Some pathways for the bimolecular decomposition of DMPO-O2H and DMPO-OH have also been computed.

Anions↗
PubMed2005

The gas-phase acidity of 2(3H)-oxepinone: a step toward an experimental heat of formation for the 2-oxepinoxy radical.

In an effort to gain further insight into the oxidation of the phenyl radical, this contribution details the first of three experiments designed to establish the heat of formation of the 2-oxepinoxy radical. We report here the synthesis of the previously unknown 2(7H)-oxepinone (12a) and 2(3H)-oxepinone (12b). We have determined the gas-phase acidity (Delta(acid)H(298)) of 12b by means of a bracketing study employing a flowing afterglow apparatus with quadrupole mass spectrometric detection. In this experiment, compound 12b was reacted in the gas phase with a series of bases of varying strength. A proton-transfer reaction was observed when 12b was reacted with t-BuS(-), but not when 12b was reacted with HS(-). We conclude that the gas-phase acidity of 12b lies between those of t-BuSH and H(2)S, and it is thereby assigned a value of Delta(acid)H(298) = 352 +/- 2 kcal/mol. Additional support for this value was found by performing the reverse reactions (i.e. the 2-oxepinoxy anion (15a) was reacted with proton sources of differing acidities). Anion 15a underwent a proton-transfer reaction with H(2)S but not with t-BuSH, in agreement with the results from the forward reactions. The experimental value of the gas-phase acidity agrees well with those from DFT calculations, which predicted Delta(acid)H(298) = 348.9 kcal/mol at the B3LYP/6-31+G(d) level and 349.2 kcal/mol at the B3LYP/aug-cc-pVTZ level.

Journal Article↗
PubMed2005

On the electrophilicity of hydroxyl radical: a laser flash photolysis and computational study.

The rate coefficients for reactions of hydroxyl radical with aromatic hydrocarbons were measured in acetonitrile using a novel laser flash photolysis method. Comparison of kinetic data obtained in acetonitrile with those obtained in aqueous solution demonstrates an unexpected solvent effect on the reactivity of hydroxyl radical. In particular, reactions of hydroxyl radical with benzene were faster in water than in acetonitrile, and by a significant factor of 65. Computational studies, at the B3LYP and CBS-QB3 levels, have confirmed the rate enhancement of hydroxyl radical addition to benzene via calculation of the transition states in the presence of explicit solvent molecules as well as a continuum dielectric field. The origin of the rate enhancement lies entirely in the structures of the transition states and not in the pre-reactive complexes. The calculations reveal that the hydroxyl radical moiety becomes more anionic in the transition state and, therefore, looks more like hydroxide anion. In the transition states, solvation of the incipient hydroxide anion is more effective with water than with acetonitrile and provides the strong energetic advantage for a polar solvent capable of hydrogen bonding. At the same time, the aromatic unit looks more like the radical cation in the transition state. The commonly held view that hydroxyl radical is electrophilic in its reactions with DNA bases is, therefore, strongly dependent on the ability of the organic substrate to stabilize the resulting radical cation.

Journal Article↗
PubMed2005

Theoretical determinations of the ambient conformational distribution and unimolecular decomposition of n-propylperoxy radical.

The conformational distribution and unimolecular decomposition pathways for the n-propylperoxy radical have been generated at the CBS-QB3, B3LYP/6-31+G and mPW1K/6-31+G levels of theory. At each of the theoretical levels, the 298 K Boltzmann distributions and rotational profiles indicate that all five unique rotamers of the n-propylperoxy radical can be expected to be present in significant concentrations at thermal equilibrium. At the CBS-QB3 level, the 298 K distribution of rotamers is predicted to be 28.1, 26.4, 19.6, 14.0, and 11.9% for the gG, tG, gT, gG', and tT conformations, respectively. The CBS-QB3 C-OO bond dissociation energy (DeltaH298 K) for the n-propylperoxy radical has been calculated to be 36.1 kcal/mol. The detailed CBS-QB3 potential energy surface for the unimolecular decomposition of the n-propylperoxy radical indicates that important bimolecular products could be derived from two 1,4-H transfer mechanisms available at T < 500 K, primarily via an activated n-propylperoxy adduct.

Journal Article↗
PubMed2005

Studies of oxalate-bridged MM quadruple bonds and their radical cations (M=Mo or W): on the matter of linkage isomers.

Electronic structure calculations employing density functional theory (DFT) and time-dependent density functional theory (TD-DFT) have been carried out on the model complexes {[(HCO2)3M2]2(mu-O2CCO2)}0/+(M=Mo or W) in D2h symmetry, where the oxalate bridge forms either five- or six-membered rings with the M(2) centres; the complexes are hereafter referred to as mu(5,5)0/+ and mu(6,6)0/+, respectively. The calculations predict that the neutral complexes should exist as the mu(5,5) linkage isomer, while the radical cations favour the mu(6,6) isomer by ca. 4-6 kJ mol-1. For the mu(5,5) isomers, the rotational barriers about the oxalate C-C bond have been calculated to be 15.9 and 27.2 kJ mol-1 for M=Mo and W, respectively. For the cationic mu(5,5)+ isomers the barrier is higher, being 36.8 and 50.6 kJ mol-1 for M=Mo and W, respectively. The calculated Raman and visible near-IR spectra for the mu(5,5)0/+ and mu(6,6)0/+ are compared with experimental data obtained for the {[(tBuCO2)3M2]2(mu-O2CCO2)}0/+ complexes, hereafter referred to as M4OXA0/+(M=Mo or W). The experimental data more closely correlate with that calculated for the mu(5,5)0/+ linkage isomers, and the 13C-NMR spectrum of the mixed metal complex Mo2W2OXA indicates the presence of the 5-membered oxalate-bridged species (J(CC)=100 Hz).

Journal Article↗
PubMed2005

The final catalytic step of cytochrome p450 aromatase: a density functional theory study.

B3LYP density functional theory calculations are used to unravel the mysterious third step of aromatase catalysis. The feasibility of mechanisms in which the reduced ferrous dioxygen intermediate mediates androgen aromatization is explored and determined to be unlikely. However, proton-assisted homolysis of the peroxo hemiacetal intermediate to produce P450 compound I and the C19 gem-diol likely proceeds with a low energetic barrier. Mechanisms for the aromatization and deformylation sequence which are initiated by 1beta-hydrogen atom abstraction by P450 compound I are considered. 1beta-Hydrogen atom abstraction from substrates in the presence of the 2,3-enol encounters strikingly low barriers (5.3-7.8 kcal/mol), whereas barriers for this same process rise to 17.0-27.1 kcal/mol in the keto tautomer. Transition states for 1beta-hydrogen atom abstraction from enolized substrates in the presence of the 19-gem-diol decayed directly to the experimentally observed products. If the C19 aldehyde remains unhydrated, aromatization occurs with concomitant decarbonylation and therefore does not support dehydration of the C19 aldehyde prior to the final catalytic step. On the doublet surface, the transition state connects to a potentially labile 1(10) dehydrogenated product, which may undergo rapid aromatization, as well as formic acid. Ab initio molecular dynamics confirmed that the 1beta-hydrogen atom abstraction and deformylation or decarbonylation occur in a nonsynchronous, coordinated manner. These calculations support a dehydrogenase behavior of aromatase in the final catalytic step, which can be summarized by 1beta-hydrogen atom abstraction followed by gem-diol deprotonation.

Androstenedione↗
PubMed2005

Study of singlet and triplet 2,6-difluorophenylnitrene by time-resolved infrared spectroscopy.

The solution-phase photochemistry of 2,6-difluorophenyl azide was studied by time-resolved infrared (TRIR) spectroscopy. A vibrational band of singlet 2,6-difluorophenyl nitrene (1N) was observed at 1404 cm(-1) between 243 and 283 K. At ambient temperature, it was not possible to detect this intermediate. At 298 K, only the decay products of the singlet nitrene, the isomerized products ketenimine (K) and triplet-2,6-difluorophenyl nitrene (3N), were observed at 1576 and 1444 cm(-1), respectively. The assignments are consistent with density functional theory calculations and previous studies of this system by laser flash photolysis techniques with UV-visible detection.

Journal Article↗
PubMed2005

Reaction of hydroxyl radical with aromatic hydrocarbons in nonaqueous solutions: A laser flash photolysis study in acetonitrile.

Laser flash photolysis (LFP) of acetonitrile solutions of N-hydroxypyridin-2-thione in the presence of trans-stilbene generates a transient absorbance at 392 nm, attributed to the addition of hydroxyl radical to stilbene. The observed transient absorbance was used in competitive LFP experiments to determine relative rates of reaction for hydroxyl radical with a range of aromatic hydrocarbons in acetonitrile. Structure-reactivity relationships for the reaction of hydroxyl radical with arenes are derived. With these aromatic hydrocarbons, we observe a good correlation between the rates of hydroxyl-radical reaction and the ionization potential of the arene. Kinetic isotope effects are consistent with hydroxyl-radical addition being the dominant reaction pathway with the arene.

Acetonitriles↗
PubMed2005

Comparative DFT study of the spin trapping of methyl, mercapto, hydroperoxy, superoxide, and nitric oxide radicals by various substituted cyclic nitrones.

The thermodynamics of the spin trapping of various cyclic nitrones with biologically relevant radicals such as methyl, mercapto, hydroperoxy, superoxide anion, and nitric oxide was investigated using computational methods. A density functional theory (DFT) approach was employed in this study at the B3LYP/6-31+G(d,p)//B3LYP/6-31G(d) level. The order of increasing favorability for Delta G(rxn) (kcal/mol) of the radical reaction with various nitrones, in general, follows a trend similar to their respective experimental reduction potentials as well as their experimental second-order rate constants in aqueous solution: NO (14.57) < O2*- (-7.51) < *O2H (-13.92) < *SH (-16.55) < *CH3 (-32.17) < *OH (-43.66). The same qualitative trend is predicted upon considering the effect of solvation using the polarizable continuum model (PCM): i.e., NO (14.12) < O2*- (9.95) < *O2H (-6.95) < *SH (-13.57) < *CH3 (-32.88) < *OH (-38.91). All radical reactions with these nitrones are exoergic, except for NO (and O2*- in the aqueous phase), which is endoergic, and the free energy of activation (Delta G) for the NO additions ranges from 17.7 to 20.3 kcal/mol. This study also predicts the favorable formation of certain adducts that exhibit intramolecular H-bonding interactions, nucleophilic addition, or H-atom transfer reactions. The spin density on the nitronyl N of the superoxide adducts reveals conformational dependences. The failure of nitrones to trap NO at normal conditions was theoretically rationalized due to the endoergic reaction parameters.

Alkanes↗
PubMed2005

Observation of the A-X electronic transition of the 1-C3H7O2 and 2-C3H7O2 radicals using cavity ringdown spectroscopy.

Cavity ringdown spectra of the A-X electronic transition of the 1-propyl and 2-propyl peroxy radicals are reported. Spectroscopic assignments are facilitated by implementing several production mechanisms, either isomer-specific or not. Assignments of specific spectral lines to particular conformers of a given isomer are suggested. Observations on the temporal decay of the various species are reported.

Journal Article↗
PubMed2005

Spectroscopic and computational studies of aqueous ethylene glycol solution surfaces.

The combination of Monte Carlo, ab initio, and DFT computational studies of ethylene glycol (EG) and EG-water hydrogen-bonding complexes indicate that experimental vibrational spectra of EG and EG-water solution surfaces have contributions from numerous conformations of both EG and EG-water. The computed spectra, derived from harmonic vibrational frequency calculations and a theoretical Boltzmann distribution, show similarity to the experimental surface vibrational spectra of EG taken by broad-bandwidth sum frequency generation (SFG) spectroscopy. This similarity suggests that, at the EG and aqueous EG surfaces, there are numerous coexisting conformations of stable EG and EG-water complexes. A blue shift of the CH2 symmetric stretch peak in the SFG spectra was observed with an increase in the water concentration. This change indicates that EG behaves as a hydrogen-bond acceptor when solvated by additional water molecules. This also suggests that, in aqueous solutions of EG, EG-EG aggregates are unlikely to exist. The experimental blue shift is consistent with the results from the computational studies.

Computer Simulation↗
PubMed2005

Septanose carbohydrates: synthesis and conformational studies of methyl alpha-D-glycero-D-idoseptanoside and methyl beta-D-glycero-D-guloseptanoside.

We report the synthesis of methyl alpha-D-glycero-D-idoseptanoside (1) and methyl beta-D-glycero-D-guloseptanoside (2) and the characterization of their preferred solution conformations by computational chemistry and (1)H NMR (3)J(H,H) coupling constant analysis. Central to the synthetic approach was the epoxidation of glucose-derived oxepine 3 using DMDO. Nucleophilic attack on the resulting 1,2-anhydroseptanose using NaOCH(3) in CH(3)OH followed by deprotection provided the 1,2-trans diastereomers 1 and 2. The computational approach for determining the preferred low energy septanose conformations began with a pseudo Monte Carlo search for each isomer using minimization with the AMBER force field. Single-point energy calculations (HF/6-31G *and B3LYP/6-31+G**) as well as full geometry optimizations in a model for aqueous solvent were then conducted using the conformers within 5 kcal/mol of the AMBER global minimum. Calculated (3)J(H,H) values, based on a Boltzmann distribution of the computed low energy conformers, were compared to experimental (3)J(H,H) values from (1)H NMR coupling constant analyses. The correlation between calculated and observed values suggest that septanose carbohydrates are not so flexible and should generally prefer one twist-chair (TC) conformation.

Carbohydrate Conformation↗
PubMed2004

A comparison of acetyl- and methoxycarbonylnitrenes by computational methods and a laser flash photolysis study of benzoylnitrene.

Density functional theory (DFT), CCSD(T), and CBS-QB3 calculations were performed to understand the chemical and reactivity differences between acetylnitrene (CH(3)C(=O)N) and methoxycarbonylnitrene (CH(3)OC(=O)N) and related compounds. CBS-QB3 theory alone correctly predicts that acetylnitrene has a singlet ground state. We agree with previous studies that there is a substantial N-O interaction in singlet acetylnitrene and find a corresponding but weaker interaction in methoxycarbonylnitrene. Methoxycarbonylnitrene has a triplet ground state because the oxygen atom stabilizes the triplet state of the carbonyl nitrene more than the corresponding singlet state. The oxygen atom also stabilizes the transition state of the Curtius rearrangement and accelerates the isomerization of methoxycarbonylnitrene relative to acetylnitrene. Acetyl azide is calculated to decompose by concerted migration of the methyl group along with nitrogen extrusion; the free energy of activation for this concerted process is only 27 kcal/mol, and a free nitrene is not produced upon pyrolysis of acetyl azide. Methoxycarbonyl azide, on the other hand, does have a preference for stepwise Curtius rearrangement via the free nitrene. The bimolecular reactions of acetylnitrene and methoxycarbonylnitrene with propane, ethylene, and methanol were calculated and found to have enthalpic barriers that are near zero and free energy barriers that are controlled by entropy. These predictions were tested by laser flash photolysis studies of benzoyl azide. The absolute bimolecular reaction rate constants of benzoylnitrene were measured with the following substrates: acetonitrile (k = 3.4 x 10(5) M(-1) (s-1)), methanol (6.5 x 10(6) M(-1) s(-1)), water (4.0 x 10(6) M(-1) s(-1)), cyclohexane (1.8 x 10(5) M(-1) s(-1)), and several representative alkenes. The activation energy for the reaction of benzoylnitrene with 1-hexene is -0.06 +/- 0.001 kcal/mol. The activation energy for the decay of benzoylnitrene in pentane is -3.20 +/- 0.02 kcal/mol. The latter results indicate that the rates of reactions of benzoylnitrene are controlled by entropic factors in a manner reminiscent of singlet carbene processes.

Journal Article↗
PubMed2004

Spin trapping by 5-carbamoyl-5-methyl-1-pyrroline N-oxide (AMPO): theoretical and experimental studies.

The nitrone 5-carbamoyl-5-methyl-1-pyrroline N-oxide (AMPO) was synthesized and characterized. Spin trapping of various radicals by AMPO was demonstrated for the first time by electron paramagnetic resonance (EPR) spectroscopy. The resulting spin adducts for each of these radicals gave unique spectral profiles. The hyperfine splitting constants for the superoxide adduct are as follows: isomer I (80%), a(nitronyl)(-)(N) = 13.0 G and a(beta)(-)(H) = 10.8 G; isomer II (20%), a(nitronyl)(-)(N) = 13.1 G, a(beta)(-)(H) = 12.5 G, and a(gamma)(-)(H) = 1.75 G. The half-life of the AMPO-O(2)H was about 8 min, similar to that observed for EMPO but significantly shorter than that of the DEPMPO-O(2)H with t(1/2) approximately 16 min. However, the spectral profile of AMPO-O(2)H at high S/N ratio is distinguishable from the spectrum of the (*)OH adduct. Theoretical analyses using density functional theory calculations at the B3LYP/6-31+G//B3LYP/6-31G level were performed on AMPO and its corresponding superoxide adduct. Calculations predicted the presence of intramolecular H-bonding in both AMPO and its superoxide adduct. The H-bonding interaction was further confirmed by an X-ray structure of AMPO, and of the novel and analogous amido nitrone 2-amino-5-carbamoyl-5-methyl-1-pyrroline N-oxide (NH(2)-AMPO). The thermodynamic quantities for superoxide radical trapping by various nitrones have been found to predict favorable formation of certain isomers. The measured partition coefficient in an n-octanol/buffer system of AMPO was similar to those of DMPO and DEPMPO. This study demonstrates the suitability of the AMPO nitrone for use as a spin trap to study radical production in aqueous systems.

Crystallography, X-Ray↗
PubMed2004

Thienyl carboxylate ligands bound to and bridging MM quadruple bonds, M = Mo or W: models for polythiophenes incorporating MM quadruple bonds.

A series of compounds of the form [M(2)L(4)] and [[((t)()BuCO(2))(3)M(2)](2)(mu-L')] have been made where M = Mo or W, L = a thienyl, bithienyl, or terthienyl carboxylate, and L' = a corresponding thienyl dicarboxylate. The electronic absorption spectra are reported and the electronic structures discussed. Intense metal-to-ligand charge transfer bands traverse the visible and near-IR regions of the electronic absorption spectrum. The compounds show reversible metal-based oxidations and quasireversible ligand-based reductions. The molecular structure of Mo(2)(O(2)C-2-Th)(4).2THF is reported, on the basis of a single crystal X-ray diffraction study. These compounds provide insight into the expected properties of related dimetalated polythiophenes incorporating MM quadruple bonds.

Carboxylic Acids↗
PubMed2004

Electronically-coupled tungsten-tungsten quadruple bonds: comparisons of electron delocalization in 3,6-dioxypyridazine and oxalate-bridged compounds.

The preparation of the 3,6-dioxypyridazine-bridged tungsten complex, [W(2)(O(2)C(t)Bu)(3)](2)(mu-H(2)C(4)N(2)O(2)), I, is described, along with its single-electron oxidized cation, I(+), formed in the reaction between I and Ag(+)PF(6)(-). Compound I has been structurally characterized as a PPh(3) adduct, and I(+)PF(6)(-) as a THF solvate, by single-crystal X-ray studies. The geometric parameters of these compounds compare well with those calculated for the model compounds [W(2)(O(2)CH)(3)](2)(mu-H(2)C(4)N(2)O(2)) and [W(2)(O(2)CH)(3)](2)(micro-H(2)C(4)N(2)O(2))(+) by density functional theory employing the Gaussian 98 and 03 suite of programs. The calculations indicate that the two W(2) centers are strongly coupled by M(2) delta-to-bridge pi-bonding, and further coupled by direct M(2)...M(2) bonding. Compound I is purple and shows an intense absorption in the visible region due to a metal-to-bridge charge transfer and, with excitation within this absorption, compound I exhibits pronounced resonance Raman bands associated with symmetric vibrations of the bridge and the M(4) unit. The cyclic voltammogram of I in THF, the EPR spectrum of I(+)PF(6) in 2-MeTHF and the electronic absorption spectrum of I(+)PF(6)(-) in THF are consistent with electron delocalization over both W(2) units. These new data are compared with previous data for the molybdenum analogue, related oxalate-bridged compounds and closely related cyclic polyamidato-bridged Mo(4)-containing compounds. It is proposed that, while the electronic coupling occurs principally by an electron-hopping mechanism for oxalate-bridged compounds, hole-hopping contributes significantly in the cases of the amidate bridges and that this is more important for M = Mo than for M = W. Furthermore, for Class III fully delocalized mixed-valence compounds, the magnitude of K(c), determined from electrochemical methods, is not necessarily a measure of the extent of electron delocalization.

Journal Article↗
PubMed2004

Theoretical study of the spin trapping of hydroxyl radical by cyclic nitrones: a density functional theory approach.

The hydroxyl radical (*OH) is an important mediator of biological oxidative stress, and this has stimulated interest in its detection. 5,5-Dimethyl-1-pyrroline N-oxide (DMPO) and its alkoxycarbonyl and alkoxyphosphoryl analogues have been employed as spin traps for electron paramagnetic resonance (EPR) spectroscopic radical detection. Energies of optimized geometries of nitrones and their corresponding *OH adducts were calculated using density functional theory (DFT) at the B3LYP/6-31+G//B3LYP/6-31G level. Calculations predict that the trans adduct formation is favored in alkoxycarbonyl nitrones, while cis adducts with intramolecular H-bonding is favored for alkoxyphosphoryl nitrones. Addition of *OH to a phosphoryl-substituted nitrone is more exoergic than the carbonylated nitrones. Charge and spin densities on the nitrone spin traps were correlated with their rates of addition with *OH, and results show that the charge density on the nitronyl C, the site of *OH addition, is more positive in phosphorylated nitrones compared to DMPO and the alkoxycarbonyl nitrones. The dihedral angle between the beta-H and nitroxyl O bonds is smaller in phosphorylated nitrones, and that aspect appears to account for the longer half-lives of the spin adducts compared to those in DMPO and alkoxycarbonyl nitrones. Structures of nitrones with trifluoromethyl-, trifluoromethylcarbonyl-, methylsulfonyl-, trifluoromethylsulfonyl-, amido-, spiropentyl-, and spiroester substituents were optimized and their energies compared. Amido and spiroester nitrones were predicted to be the most suitable nitrones for spin trapping of *OH due to the similarity of their thermodynamic and electronic properties to those of alkoxyphosphoryl nitrones. Moreover, dimethoxyphosphoryl substitution at C-5 was found to be the most efficient substitution site for spin trapping of *OH, and their spin adducts are predicted to be the most stable of all of the isomeric forms.

Cyclic N-Oxides↗