Supramolecular conducting nanowires from organogels.
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Biomedical subjects
Publications and source records attributed to Concepció Rovira.
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The synthesis of a three-dimensional, six-connecting, organic building block based on a robust, rigid, and open-shell polychlorotriphenylmethyl (PTM) unit (radical 1) is reported, and its self-assembly properties are described in detail. The tendencies of this highly polar molecule and its hydrogenated precursor, compound 4, to form hydrogen bonds with oxygenated solvents ([1THF(6)] and [4THF(6)]) were reduced by replacing THF with diethyl ether in the crystallization process to yield two-dimensional (2D) hydrogen-bonded structures ([1(Et(2)O)(3)] and [4(Et(2)O)(3)]). The presence of direct hydrogen bonds between the radicals in the latter phase of 1 gives rise to very weak ferromagnetic intermolecular interactions at low temperatures, whereas when the radicals are isolated by THF molecules these interactions are antiferromagnetic and very weak. The role played by the carboxylic groups not only in the self-assembly properties but also in the transmission of the magnetic interactions has been illustrated by determination of the crystal structure and measurement of the magnetic properties of the corresponding hexaester radical 6, in which the close packing of molecular units gives rise to weak antiferromagnetic intermolecular interactions. Attempts to avoid solvation of the molecules in the solid state and to increase the structural and magnetic dimensionality were pursued by recrystallization of both compounds 1 and 4 from concentrated nitric acid, affording two three-dimensional (3D) robust hydrogen-bonded structures. While the structure obtained with compound 4 is characterized by the presence of polar channels and boxes containing water guest molecules along the c axis, radical 1 was oxidized to the corresponding fuchsone 10, which presented a completely different close-packed, guest-free structure.
A new series of secondary amides bearing long alkyl chains with pi-electron-donor cores has been synthesized and characterised, and their self-assembly upon casting at surfaces has been studied. The different supramolecular assemblies of the materials have been visualized by using atomic force microscopy (AFM) and transmission electron microscopy (TEM). It is possible to obtain well-defined fibres of these aromatic core molecules as a result of the hydrogen bonds between the amide groups. Indeed, by altering the alkyl-chain lengths, constitutions, concentrations and solvent, it is possible to form different rodlike aggregates on graphite. Aggregate sizes with a lower limit of 6-8 nm width have been reached for different amide derivatives, while others show larger aggregates with rodlike morphologies which are several micrometers in length. For one compound that forms nanofibres, doping was performed by using a chemical oxidant, and the resulting layer on graphite was shown to exhibit metallic-like spectroscopy curves when probed with current-sensing AFM. This technique also revealed current maps of the surface of the molecular material. Fibre formation not only takes place on the graphite surface: nanometre scale rods have been imaged by using TEM on a grid after evaporation of solutions of the compounds in chloroform. Molecular modelling proves the importance of the hydrogen bonds in the generation of the fibres, and indicates that the constitution of the molecules is vital for the formation of the desired columnar stacks, results that are consistent with the images obtained by microscopic techniques. The results show the power of noncovalent bonds in self-assembly processes that can lead to electrically conducting nanoscale supramolecular wires.
Noncovalent bonds have been used to assemble stacks of pi-electron-rich moieties at a surface, generating a pathway for charge transport. The system is comprised of a tetrathiafulvalene (TTF) derivative incorporating two amide groups which fasten the relative orientations of the electroactive moieties in the supramolecular polymer that is formed at the surface of graphite in octanoic acid. Scanning tunneling microscopy (STM) combined with molecular mechanics calculations has been used to prove the structure of the wires, and theory, corroborated with STS experiments, predicts that they are promising superstructures for charge transport.
Derivatives of 9-[2-(1,3-dithiol-2-ylidene)ethylidene]thioxanthene have been synthesized using Horner-Wadsworth-Emmons reactions of (1,3-dithiol-2-yl)phosphonate reagents with thioxanthen-9-ylidene-acetaldehyde (5). Further reactions lead to the sterically crowded cross-conjugated "vinylogous tetrathiafulvalene" derivative 9-[2,3-bis-(4,5-dimethyl-1,3-dithiol-2-ylidene)-propylidene]thioxanthene (10). X-ray crystallography, solution electrochemistry, optical spectroscopy, spectroelectrochemistry, and simultaneous electrochemistry and electron paramagnetic resonance spectroscopy, combined with theoretical calculations performed at the B3LYP/6-31G(d) level, elucidate the interplay of the electronic and structural properties in these molecules. For compound 10, multistage redox behavior is observed: the overall electrochemical process can be represented by 10-->10(.+)-->10(2+)-->10(4+) with good reversibility for the 10-->10(.+)-->10(2+) transformations. At the tetracation stage there is the maximum gain in aromaticity at the dithiolium and thioxanthenium rings. Theory predicts that for 10, 10(.+), and 10(2+) the trans isomers are more stable than the cis isomers (by ca. 2-18 kJ mol(-1)), whereas for 10(4+) the cis isomer becomes more stable than the trans isomer (by ca. 25 kJ mol(-1)) [trans and cis refer to the arrangement of the two dithiole moieties with respect to the central ==C(R)--C(H)== fragment]. These data explain the detection in cyclic voltammograms of both trans and cis isomers of 10 and 10(.+) during the reduction of 10(4+) at fast scan rates (>100 mV s(-1)) when the cis-trans isomerization is not completed within the timescale of the experiment. The X-ray structure of the charge-transfer complex (CTC) of 10 with 2,4,5,7-tetranitrofluorene-9-dicyanomethylenefluorene (DTeF) [stoichiometry: 10(.+)(DTeF)(2) (.-)2 PhCl] reveals a twisted conformation of 10(.+) (driven by the bulky thioxanthene moiety) and provides a very rare example of segregated stacking of a fluorene acceptor in a CTC.
The treatment of alpha-H-p-H-PTM (PTM = polychlorotriphenylmethane) with oleum 65% followed by deprotonation and oxidation leads to the isolation of a novel pure organic radical PTMSO3H x 3 H2O x 0.5 hexane (2). The X-ray diffraction of 2 reveals a layered structure with disordered H2O molecules between facing sulfonic acid groups. We have explored the coordination abilities of the sulfonate derivative using different metals. The treatment of 2 with mild bases yields the sulfonate radical PTMSO3Na x H2O (3). On the other hand, the new compound [Cu(py)2(H2O)4](PTMSO3)2 x 2 H2O x 2 EtOH (4) has been crystallized using Cu(II) as the metallic counterion in the presence of pyridine. The structure reveals a solvent-separated ion-pair-type compound, with no direct coordination of the metal ion with the sulfonate group, and the formation of organic layers between layers of transition metal complexes. This situation has been overcome by favoring the stabilization of the sulfonate group over the Cu(II) center by changing the pyridine ligand to cyclam. This has led to compound [Cu(cyclam)](PTMSO3)2 x 6 EtOH (5a), in which the sulfonate group acts as a monodentate axial ligand for the Cu(II) center. We have observed a single-to-single crystal rearrangement from 5a to [Cu(cyclam)](PTMSO3)2 (5b) because of the loss of the solvent of crystallization, without significant modification of the metal coordination environment. All species have been structurally and magnetically characterized, and the magnetic coupling between the organic radicals and the metal paramagnetic centers is discussed.
Derivatives of 9-(1,3-dithiol-2-ylidene)fluorene (9) and 9-(1,3-dithiol-2-ylidene)thioxanthene (10) have been synthesised using Horner-Wadsworth-Emmons reactions of (1,3-dithiol-2-yl)phosphonate reagents with fluorenone and thioxanthen-9-one. X-ray crystallography, solution electrochemistry, optical spectroscopy, spectroelectrochemistry and simultaneous electrochemistry and electron paramagnetic resonance (SEEPR), combined with theoretical calculations performed at the B3P86/6-31G** level, elucidate the interplay of the electronic and structural properties in these molecules. These compounds are strong two-electron donors, and the oxidation potentials depend on the electronic structure of the oxidised state. Two, single-electron oxidations (E(1)ox < E(1)ox) were observed for 9-(1,3-dithiol-2-ylidene)fluorene systems (9). In contrast, derivatives of 9-(1,3-dithiol-2-ylidene)thioxanthene (10) display the unusual phenomenon of inverted potentials (E(1)ox > E(1)ox) resulting in a single, two-electron oxidation process. The latter is due to the aromatic structure of the thioxanthenium cation (formed on the loss of a second electron), which stabilises the dication state (10(2+)) compared with the radical cation. This contrasts with the nonaromatic structure of the fluorenium cation of system 9. The two-electron oxidation wave in the thioxanthene derivatives is split into two separate one-electron waves in the corresponding sulfoxide and sulfone derivatives 27-29 owing to destabilisation of the dication state.
Temperature has great impact on the structure and size of the linked crystallites of the conducting topmost layer formed at the surface of a polycarbonate film via the reaction BEDT-TTF+IBr [BEDT-TTF=bis(ethylenedithio)tetrathiafulvalene]. We show that fine temperature control permits formation of a semiconducting topmost layer of alpha'-(BEDT-TTF)(2)(I(x)Br(1-x))(3) crystallites with either micro- or nanometre size, a result that opens a route to miniaturized conducting plastic materials.
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To study molecules able to act as good "molecular wires", intramolecular electron transfer between two triphenylmethyl redox centers connected by bridges with different topologies and substituents have been studied in solution, both by UV-Vis-NIR and EPR spectroscopies. The synthetic methodology used allows a complete control of the geometry of polychlorotriphenylmethyl diradicals 1 and 2, which have para and meta topologies, respectively, as well as of their E/Z isomerism. This fact is used to show the influence of the different topologies in the ease of electron transfer, which is larger for the para than for the meta isomer where a small or negligible electronic coupling is observed. The related diradical 3 that have the same topology as the para isomer 1 but bearing two substituents on the central phenyl ring shows similar ease of electron transfer, that the para isomer 1.
A trinuclear MnII cluster based on the versatile polychlorinated triphenylmethyl carboxylic radical ligand has been characterized by X-ray crystallography and magnetic measurements, representing a rare example of a MnII trinuclear linear structure with six open-shell ligands.
A metal-organic open-framework with an unprecedented (6,3)-helical topology, large channels and mixed ferro- and antiferromagnetic interactions has been synthesized using a three-connecting tricarboxylic polychlorotriphenylmethyl radical and Co(ii) ions.
Both calculations and experimental data, showing the possibility of formation of I3-, I2Cl-, and ICl2- anions through ICl reduction processes, are described in detail. The above processes were used successfully for the preparation of different molecular conductors based on trihalide anions and bis(ethylenedithio)tetrathiafulvalene (BEDT-TTF). The reaction between ICl and BEDT-TTF occurring in a strong polar reaction media (epsilon > or = 34.8 D) results in the formation of novel molecular conductors containing different sets of the I3-, I2Cl-, and ICl2- anions: beta-(BEDT-TTF)2[(I3)0.4(I2Cl)0.6], beta'BEDT-TTF)2[(I2Cl)0.2(ICl2)0.8], and beta' '-('-(BEDT-TTF)2[(I3)0.075(I2Cl)0.150(ICl2). These molecular conductors reveal semiconducting (beta'-phase) as well as metallic (beta- and beta' '-phases) transport properties. It is also shown that in the reaction media with polarity less than 18.4 D only the I3- anion is incorporated in the BEDT-TTF-based molecular crystals. This fact is an unexpected outcome of our study.
The synthesis, self assembly and magnetic properties of a polychlorotriphenylmethyl radical, substituted with six meta-carboxylic groups, are reported showing that radical-radical hydrogen bonds in the solid state yield to very weak intermolecular ferromagnetic interactions.
Doping of spin-ladder systems by isostructural paramagnetic complexes was attempted. Despite the close isostructural nature of the pure (DT-TTF)2[M(mnt)2] (M = Au, Ni, Pt) end-members, which present a ladder structure, doping of the spin-ladder (DT-TTF)2[Au(mnt)2] with either 5% or 25% [M(mnt)2]- (M = Ni, Pt) generates two (metrically) new phases. Their markedly different crystal structures have been determined using laboratory X-ray powder diffraction data. (DT-TTF)2[Au0.75Ni0.25(mnt)2] consists of a mixed-valence compound (of triclinic symmetry), which was only detected, pure or in a mixture of phases, when [Ni(mnt)2]- was used as a dopant. Differently, the stoichiometric 1:1 [DT-TTF][Au0.75Pt0.25(mnt)2] monoclinic phase was found when [Pt(mnt)2]- (in 5% and 25%) was employed as the doping agent. Remarkably, only in the 5% Pt doping experiment, the major component of the mixture was the ladder structure compound (DT-TTF)2[Au(mnt)2] doped with minor amounts of Pt. This 5% Pt-doped specimen shows an EPR signal (g = 2.0115, DeltaHpp = 114 G at 300 K) wider than the pure compound (DT-TTF)2[Au(mnt)2], denoting exchange between the donor spins and Pt(mnt)2- centers. The electrical transport properties of the 5% Pt-doped composition at high temperatures are comparable to those of (DT-TTF)2[Au(mnt)2] with room-temperature conductivity sigma300K = 13 S/cm and thermopower S300K = 46 microV/K, with a sharp transition at 223 K similar to that previously observed in the Cu analogue at 235 K.
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A tetra(thiafulvalene-crown-ether) phthalocyanine self-assembles into helical tapes nanometers wide and micrometers long. Formation of these scrolled molecular architectures is a first for phthalocyanine fibres and shows potential as a novel conducting material.