Biomedical subjects

Craig C Martens

Publications and source records attributed to Craig C Martens.

5 recordsLinked to original sources

PubMed2006

Entangled trajectory dynamics in the Husimi representation.

We solve quantum dynamical equations of simple systems by propagating ensembles of interacting trajectories. A scheme is proposed which uses adaptive kernel density estimation for representing probability distribution functions and their derivatives. The formulation is carried on in the Husimi representation to ensure the positiveness of the distribution functions. By comparing to previous work, the effect of changing representations is studied as well as the advantage of using adaptive kernels for the estimation of probability distributions. We found significant improvement in the accuracy of the results.

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PubMed2006

Simulation of vibrational dephasing of I(2) in solid Kr using the semiclassical Liouville method.

In this paper, we present simulations of the decay of quantum coherence between vibrational states of I(2) in its ground (X) electronic state embedded in a cryogenic Kr matrix. We employ a numerical method based on the semiclassical limit of the quantum Liouville equation, which allows the simulation of the evolution and decay of quantum vibrational coherence using classical trajectories and ensemble averaging. The vibrational level-dependent interaction of the I(2)(X) oscillator with the rare-gas environment is modeled using a recently developed method for constructing state-dependent many-body potentials for quantum vibrations in a many-body classical environment [J. M. Riga, E. Fredj, and C. C. Martens, J. Chem. Phys. 122, 174107 (2005)]. The vibrational dephasing rates gamma(0n) for coherences prepared between the ground vibrational state mid R:0 and excited vibrational state mid R:n are calculated as a function of n and lattice temperature T. Excellent agreement with recent experiments performed by Karavitis et al. [Phys. Chem. Chem. Phys. 7, 791 (2005)] is obtained.

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PubMed2005

Quantum vibrational state-dependent potentials for classical many-body simulations.

In this paper, we present a method for constructing simple state-dependent many-body potentials for quantum vibrations in a classical bath. The approach is based on an adiabatic separation between high-frequency quantum vibrational modes of the solute and the lower frequency classical motion of the solvent, and on a first-order perturbation theory description of the dependence of the quantum energies on bath configuration. In the simplest realization of the method, the delocalized quantum probability density of the vibrational mode is approximated by a sum of two delta functions, with positions and weights chosen to represent the lowest three moments of the exact distribution. Thus, in the many-body description of the system, each atom describing the quantum vibration is represented by a pair of particles. These quantum particles are held in rigid relative position and interact with the bath via potentials the magnitudes of which are modified by the delta-function weights. The resulting approach allows the classical molecular dynamics of molecules in arbitrary quantum vibrational states to be simulated with a little more effort than a purely classical description. The applicability of the method is illustrated in many-body simulations of the dephasing of vibrational superposition states of I(2) in a cryogenic krypton matrix, yielding results in good agreement with experiment.

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PubMed2004

Semiclassical Liouville method for the simulation of electronic transitions: single ensemble formulation.

In this paper, we describe a single ensemble implementation of the semiclassical Liouville method for simulating quantum processes using classical trajectories. In this approach, one ensemble of trajectories supports the evolution of all semiclassical density matrix elements, rather than employing a distinct ensemble for each. The ensemble evolves classically under a single reference Hamiltonian, which is chosen based on physical grounds; for electronic relaxation of an initially excited state, the initially populated upper surface Hamiltonian is the natural choice. Classical trajectories evolving on the reference potential then represent the time-dependent upper state population density and also the electronic coherence and the ground state density created by electronic transition. The error made in the classical motion of the trajectories for these latter distributions is compensated for by incorporating the difference between the correct and reference Liouville propagators into the calculation of the coefficients of the individual trajectories. This approach gives very accurate results for a number of model problems and cases describing ultrafast electronic relaxation dynamics.

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PubMed2004

Simulation of environmental effects on coherent quantum dynamics in many-body systems.

In this paper we describe an application of the trajectory-based semiclassical Liouville method for modeling coherent molecular dynamics on multiple electronic surfaces to the treatment of the evolution and decay of quantum electronic coherence in many-body systems. We consider a model representing the coherent evolution of quantum wave packets on two excited electronic surfaces of a diatomic molecule in the gas phase and in rare gas solvent environments, ranging from small clusters to a cryogenic solid. For the gas phase system, the semiclassical trajectory method is shown to reproduce the evolution of the electronic-nuclear coherence nearly quantitatively. The dynamics of decoherence are then investigated for the solvated systems using the semiclassical approach. It is found that, although solvation in general leads to more rapid and extensive loss of quantum coherence, the details of the coupled system-bath dynamics are important, and in some cases the environment can preserve or even enhance quantum coherence beyond that seen in the isolated system.

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