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D A Peattie

Publications and source records attributed to D A Peattie.

5 recordsLinked to original sources
PubMed1992

Expression and characterization of human FKBP52, an immunophilin that associates with the 90-kDa heat shock protein and is a component of steroid receptor complexes.

Using an FK506 affinity column to identify mammalian immunosuppressant-binding proteins, we identified an immunophilin with an apparent M(r) approximately 55,000, which we have named FKBP52. We used chemically determined peptide sequence and a computerized algorithm to search GenPept, the translated GenBank data base, and identified two cDNAs likely to encode the murine FKBP52 homolog. We amplified a murine cDNA fragment, used it to select a human FKBP52 (hFKBP52) cDNA clone, and then used the clone to deduce the hFKBP52 sequence (calculated M(r) 51,810) and to express hFKBP52 in Escherichia coli. Recombinant hFKBP52 has peptidyl-prolyl cis-trans isomerase activity that is inhibited by FK506 and rapamycin and an FKBP12-like consensus sequence that probably defines the immunosuppressant-binding site. FKBP52 is apparently common to several vertebrate species and associates with the 90-kDa heat shock protein (hsp90) in untransformed mammalian steroid receptor complexes. The putative immunosuppressant-binding site is probably distinct from the hsp90-binding site, and we predict that FKBP52 has different structural domains to accommodate these functions. hFKBP52 contains 12 protein kinase phosphorylation-site motifs and a potential calmodulin-binding site, implying that posttranslational phosphorylation could generate multiple isoforms of the protein and that calmodulin and intracellular Ca2+ levels could affect FKBP52 function. FKBP52 transcripts are present in a variety of human tissues and could vary in abundance and/or stability.

Amino Acid Isomerases↗
PubMed1992

Identification and characterization of gamma-giardin and the gamma-giardin gene from Giardia lamblia.

The giardins are abundant cytoskeletal proteins that range in size from 29-38 kDa and are specific to the ventral disk of the intestinal protozoan parasite Giardia lamblia. The 29-kDa (beta and beta-1; refs. 8-10) and the 33-kDa (alpha-1 and alpha-2; refs. 3 and 7) giardins have been characterized previously. In this paper we extend the analysis of the giardins to include the 38-kDa giardin, which we have named gamma-giardin. After purifying gamma-giardin by two-dimensional electrophoresis, we raised polyclonal antibodies to the protein and used them to demonstrate that gamma-giardin shares at least one epitope with 9 other giardin polypeptides and that it localizes to the ventral disk of the parasite. We also determined an internal peptide sequence of 12 amino acid residues and used this information to construct oligonucleotide probes for the gamma-giardin gene. After cloning the gene, we determined the nucleotide sequence of its 933-bp open reading frame and 866 bp of 5' and 3' flanking sequence. We found the downstream AGTPuAAPy motif typical of all G. lamblia genes sequenced to date, and determined that the single copy of the gamma-giardin gene localizes to the same chromosome or chromosomal cluster as the alpha-giardins. Finally, we demonstrated by primer extension analysis that gamma-giardin transcripts contain a short untranslated leader characteristic of G. lamblia messenger RNAs.

Amino Acid Sequence↗
PubMed1992

Nucleotide sequence of a second alpha giardin gene and molecular analysis of the alpha giardin genes and transcripts in Giardia lamblia.

The giardins are a group of proteins with relative molecular masses (Mrs) between 29,000 and 38,000 that are specific to the ventral disk of the intestinal protozoan parasite Giardia lamblia. We previously have characterized alpha-giardin, renamed here alpha-1-giardin, as a novel 33-kDa protein located on the edges of the disk microribbons. Southern blot analysis of G. lamblia genomic DNA, followed by cloning and sequencing, revealed the existence of a related gene that we have called alpha-2-giardin. Sequence comparison of the alpha-giardin genes reveals 81% identity at the nucleotide level and 77% at the predicted amino acid level. The predicted alpha-giardins have similar Mrs of approximately 33,900 and are very rich in alpha-helix conformations. Each gene is present in single copy and, like many other known Giardia coding sequences, exhibits a strong preference for cytidine and guanosine in the third base position of each codon. Chromosome hybridization analysis indicates that both genes are either on the same chromosome or on chromosomes with similar mobility. Experiments utilizing primer extension and RNA sequencing provide evidence that both genes are transcribed. The stable transcripts have extremely short leader regions of only 3 nucleotides, and the downstream sequence of the alpha-2-giardin gene reveals that the sequence AGTPuAA remains a consistent element within G. lamblia protein-encoding genes.

Amino Acid Sequence↗
PubMed1979

Direct chemical method for sequencing RNA.

Four different base-specific chemical reactions generate a means of directly sequencing RNA terminally labeled with 32P. After a partial, specific modification of each kind of RNA base, an amine-catalyzed strand scission generates labeled fragments whose lengths determine the position of each nucleotide in the sequence. Dimethyl sulfate modifies guanosine. Diethyl pyrocarbonate attacks primarily adenosine. Hydrazine attacks uridine and cytidine, but salt suppresses the reaction with uridine. In all cases, aniline induces a subsequent strand scission. The electrophoretic fractionation of the labeled fragments on a polyacrylamide gel, followed by autoradiography, determines the RNA sequence. RNA labeled at the 3' end yields clean cleavage patterns for each purine and pyrimidine and allows a determination of the entire RNA sequence out to 100-200 bases from the labeled terminus.

Base Sequence↗