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PubMed2000

A formicine in New Jersey cretaceous amber (Hymenoptera: formicidae) and early evolution of the ants.

A worker ant preserved with microscopic detail has been discovered in Turonian-aged New Jersey amber [ca. 92 mega-annum (Ma)]. The apex of the gaster has an acidopore and, thus, allows definitive assignment of the fossil to the large extant subfamily Formicinae, members of which use a defensive spray of formic acid. This specimen is the only Cretaceous record of the subfamily, and only two other fossil ants are known from the Cretaceous that unequivocally belong to an extant subfamily (Brownimecia and Canapone of the Ponerinae, in New Jersey and Canadian amber, respectively). In lieu of a cladogram of formicine genera, generalized morphology of this fossil suggests a basal position in the subfamily. Formicinae and Ponerinae in the mid Cretaceous indicate divergence of basal lineages of ants near the Albian (ca. 105-110 Ma) when they presumably diverged from the Sphecomyrminae. Sphecomyrmines are the plesiomorphic sister group to all other ants, or they are a paraphyletic stem group ancestral to all other ants-they apparently became extinct in the Late Cretaceous. Ant abundance in major deposits of Cretaceous and Tertiary insects indicates that they did not become common and presumably dominant in terrestrial ecosystems until the Eocene (ca. 45 Ma). It is at this time that modern genera that form very large colonies (at least 10,000 individuals) first appear. During the Cretaceous, eusocial termites, bees, and vespid wasps also first appear-they show a similar pattern of diversification and proliferation in the Tertiary. The Cretaceous ants have further implications for interpreting distributions of modern ants.

Animals↗

PubMed1996

On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case.

Amino acid encoding genes contain character state information that may be useful for phylogenetic analysis on at least two levels. The nucleotide sequence and the translated amino acid sequences have both been employed separately as character states for cladistic studies of various taxa, including studies of the genealogy of genes in multigene families. In essence, amino acid sequences and nucleic acid sequences are two different ways of character coding the information in a gene. Silent positions in the nucleotide sequence (first or third positions in codons that can accrue change without changing the identity of the amino acid that the triplet codes for) may accrue change relatively rapidly and become saturated, losing the pattern of historical divergence. On the other hand, non-silent nucleotide alterations and their accompanying amino acid changes may evolve too slowly to reveal relationships among closely related taxa. In general, the dynamics of sequence change in silent and non-silent positions in protein coding genes result in homoplasy and lack of resolution, respectively. We suggest that the combination of nucleic acid and the translated amino acid coded character states into the same data matrix for phylogenetic analysis addresses some of the problems caused by the rapid change of silent nucleotide positions and overall slow rate of change of non-silent nucleotide positions and slowly changing amino acid positions. One major theoretical problem with this approach is the apparent non-independence of the two sources of characters. However, there are at least three possible outcomes when comparing protein coding nucleic acid sequences with their translated amino acids in a phylogenetic context on a codon by codon basis. First, the two character sets for a codon may be entirely congruent with respect to the information they convey about the relationships of a certain set of taxa. Second, one character set may display no information concerning a phylogenetic hypothesis while the other character set may impact information to a hypothesis. These two possibilities are cases of non-independence, however, we argue that congruence in such cases can be thought of as increasing the weight of the particular phylogenetic hypothesis that is supported by those characters. In the third case, the two sources of character information for a particular codon may be entirely incongruent with respect to phylogenetic hypotheses concerning the taxa examined. In this last case the two character sets are independent in that information from neither can predict the character states of the other. Examples of these possibilities are discussed and the general applicability of combining these two sources of information for protein coding genes is presented using sequences from the homeobox region of 46 homeobox genes from Drosophila melanogaster to develop a hypothesis of genealogical relationship of these genes in this large multigene family.

Algorithms↗

PubMed1996

Crossroads, milestones and landmarks in insect development and evolution: implications for systematics.

Our understanding of insect development and evolution has increased greatly due to recent advances in the comparative developmental approach. Modern developmental biology techniques such as in situ hybridization and molecular analysis of developmentally important genes and gene families have greatly facilitated these advances. The role of the comparative developmental approach in insect systematics is explored in this paper and we suggest two important applications of the approach to insect systematics--character dissection and morphological landmarking. Existing morphological characters can be dissected into their genetic and molecular components in some cases and this will lead to more and richer character information in systematic studies. Character landmarking will he essential to systematic studies for clarifying structures such as shapes or convergences, which are previously hard to analyze anatomical regions. Both approaches will aid greatly in expanding our understanding of homology in particular, and insect development in general.

Animals↗