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D Elbaum

Publications and source records attributed to D Elbaum.

At least 19 recordsLinked to original sources
PubMed2001

Oxidative and hydrolytic properties of beta-amyloid.

beta-Amyloid protein is the major component of senile plaques found in the brains of Alzheimer's patients. Previously, a new biochemical property of amyloid, its ability to disrupt ester and peptide bonds, was described [Elbaum, D., Brzyska, M., Bacia, A. & Alkon, D. (2000) Biochem. Biophys. Res. Commun. 267, 733-738]. In the present work we compare the ability of beta-amyloid to hydrolyse and oxidize model fluorescent derivatives of dichlorofluorescein [dichlorodihydrofluorescein (H2DCF) or dichlorofluorescein diacetate (DCF-DA), respectively] to the same final product (dichlorofluorescein). Although there is accumulating evidence of oxidative properties of beta-amyloid, little is known about its hydrolytic abilities. Chemical modification studies revealed that hydrolytic properties are related to a His, Ser and Asp/Glu triad, while residues of His, Tyr and Met are involved in the oxidative activity of amyloid. Studies with the rat homologue of human beta-amyloid (1-40), containing three amino-acid substitutions (Arg5-->Gly, Tyr10-->Phe and His13-->Arg) confirmed a role of His in the studied processes. Reduction of the hydrolysis product caused by inhibitors of Ser esterases (phenylmethylsulphonyl fluoride and eserine) suggests that beta-amyloid-mediated hydrolysis is Ser sensitive. Antioxidants and metal chelators that reduced H2DCF oxidation did not change or increase DCF-DA hydrolysis. Solvent isotope effects suggest the involvement of hydrogen bonds in the hydrolysis reaction. Hydrolysis was inhibited by redox-active metal ions and was practically oxygen independent while the oxidation process was redox-active-metal enhanced [Cu(II) and Fe(II) primarily], and oxygen dependent. Product formation was significantly inhibited by catalase and superoxide dismutase as well as benzoquinone, a specific superoxide anion radical scavenger. Increase of fluorescence by oxidation was strongly inhibited by azide and His and enhanced in samples prepared with deuterated phosphate buffer, suggesting singlet oxygen intermediacy. Our data are consistent with superoxide-mediated singlet oxygen intermediate in this Fenton mechanism-driven reaction. These results indicate that hydrolytic and oxidative properties of beta-amyloid are distinct features of this peptide and probably require different mechanisms to occur, but both of them may contribute to beta-amyloid toxicity.

Amino Acid Sequence↗
PubMed2000

Implication of novel biochemical property of beta-amyloid.

Alzheimer disease (AD) is a heterogeneous disorder with a variety of molecular pathologies converging predominantly on abnormal amyloid deposition particularly in the brain. beta-Amyloid aggregation into senile plaques is one of the pathological hallmarks of AD. beta-Amyloid is generated by a proteolytic cleavage of a large membrane protein, amyloid precursor protein (APP). We have observed a new property of beta-amyloid. The amyloid 1-42 beta fragment, when aggregated, possesses proteolytic and esterase-like activity, in vitro. Three independent methods were used to test the new property of beta-amyloid. While esterase activity involves imidazole catalysis, proteolytic activity is consistent with participation of a serine peptidase triad: catalytic Ser, His and Glu (or Asp). Although the amino acid triad is a necessary requirement for the protease reactivity, it is not sufficient since the secondary structure of the protein significantly contributes to the proteolytic activity. The ability of beta-amyloid to cleave peptide or ester bonds could be thus responsible for either inactivation of other proteins and/or APP proteolysis itself. This property may be responsible for early pathogenesis of AD since there is emerging evidence that non-plaque amyloid is elevated in Alzheimer patients.

Amyloid beta-Peptides↗
PubMed1999

The structure-based design of ATP-site directed protein kinase inhibitors.

The protein kinase family represents both a huge opportunity and a challenge for drug development. The conservation of structural features within the ATP binding cleft initially led to the belief that specificity would be difficult to achieve. This dogma has now been clearly dispelled with the discovery and clinical testing of a group of first generation compounds, which are characterized by a high degree of selectivity towards a variety of oncology targets. The structural basis for selectivity and potency has now been clarified with the crystallization of a number of such targets in complex with inhibitors. The protein kinase inhibitor field is now ripe for the structure based exploitation of additional highly validated targets from a variety of therapeutic areas.

Adenosine Triphosphate↗
PubMed1998

Thermal imaging of receptor-activated heat production in single cells.

Changes in enthalpy (i.e., heat content) occur during the diverse intracellular chemical and biophysical interactions that take place in the life cycle of biological cells. Such changes have previously been measured for cell suspensions or cell-free biochemical extracts by using microcalorimetry, thermocouples, or pyroelectric films, all of which afford minimal spatial or temporal resolution. Here we present a novel thermal imaging method that combines both diffraction-limited spatial (approximately 300 nm) and sampling-rate-limited time resolution, using the temperature-dependent phosphorescence intensity of the rare earth chelate Eu-TTA (europium (III) thenoyltrifluoro-acetonate). With this thermosensitive dye, we imaged intracellular heat waves evoked in Chinese hamster ovary cells after activation of the metabotropic m1-muscarinic receptor. Fast application of acetylcholine onto the cells evoked a biphasic heat wave that was blocked by atropine, and after a brief delay was followed by a calcium wave. Atropine applied by itself produced a monophasic heat wave in the cells, suggesting that its interactions with the receptor activate some intracellular metabolic pathways. The thermal imaging technique introduced here should provide new insights into cellular functions by resolving the location, kinetics, and quantity of intracellular heat production.

Animals↗
PubMed1997

Simultaneous detection of hepatitis C virus and human immunodeficiency virus RNA in serum using amplicor PCR tests.

Several tests are currently available to assist in the diagnosis of the hepatitis C virus (HCV) and human immunodeficiency virus (HIV). Tests that actually detect or quantify these viruses are based on the polymerase chain reaction (PCR) technique. However, the application of PCR is limited by the cost, labor, time-consumption, and potential for contamination. In this article we describe some procedures developed to reduce these limitations. We have developed and validated simultaneous detection methods for HIV RNA and HCV RNA in single serum samples using Amplicor PCR tests. The sensitivity and specificity of this method are comparable with the results obtained with commercial reverse transcription polymerase chain reaction (RT-PCR) techniques for HIV and HCV RNA detection. In addition we have modified the HIV Amplicor test for the RT-PCR procedure and the Chomczynski's method of RNA isolation. We hope that our method can find same applications in HIV and HCV coinfection research, blood screening, and medical diagnosis.

HIV↗
PubMed1996

Unexpected binding mode of the sulfonamide fluorophore 5-dimethylamino-1-naphthalene sulfonamide to human carbonic anhydrase II. Implications for the development of a zinc biosensor.

The three-dimensional structure of human carbonic anhydrase II (CAII) complexed with the sulfonamide fluorophore 5-dimethylamino-1-naphthalene sulfonamide (dansylamide) has been determined to 2.1-A resolution by x-ray crystallographic methods. Unlike other arylsulfonamide inhibitors of CAII, the naphthyl ring of dansylamide binds in a hydrophobic pocket in the active site, making van der Waals contacts with Val-121, Phe-131, Val-143, Leu-198, and Trp-209. Interestingly, a conformational change of Leu-198 is required to accommodate dansylamide binding, which rationalizes the enhanced dansylamide affinity measured for certain Leu-198 variants (Nair, S. K., Krebs, J.F., Christianson, D. W., and Fierke, C. A. (1995) Biochemistry 34, 3981-3989). Modeling studies indicate that a second binding mode, in which the fused aromatic ring is rotated out of the hydrophobic pocket, is sterically feasible. Both experimentally observed and modeled binding modes have implications for new leads in the design of avid CAII inhibitors. Finally, the structure of the CAII-dansylamide complex has implications for its exploitation in zinc biosensor applications, and possible routes toward the optimization of fluorophore design are considered on the basis on this structure.

Carbonic Anhydrases↗
PubMed1988

Interactions among red cell membrane proteins.

Interactions between human red band 2.1 with spectrin and depleted inside-out vesicles were studied by fluorescence resonance energy transfer and batch microcalorimetry. The band 2.1-spectrin binding isotherm is consistent with a one to one mole ratio. The association constant of 1.4 X 10(8) M-1 corresponds to the association free energy of -11.1 kcal/mol. Under our experimental conditions, the enthalpy of interaction of band 2.1-spectrin was found to be -10.8 kcal/mol and is independent of the protein mole ratio. The calculated entropic factor (-T delta S = 0.3 kcal/mol) strongly suggests a predominantly enthalpic character of the reaction. In addition, we investigated the role of band 2.1 on the binding of band 4.1 to spectrin [Podgorski, A., & Elbaum, D. (1985) Biochemistry 24, 7871-7876] and concluded that only small, if any, alterations of binding of band 4.1 to spectrin have taken place in the presence or absence of band 2.1. This suggests thermodynamic independence of the binding sites. Although the attachment of the cytoskeletal network to the membrane takes place through, at least, two different interactions, band 2.1-band 3 and 4.1-glycophorin, the relative enthalpy values suggest that band 2.1 contributes significantly more than band 4.1 to the energy of the interaction. In addition, we observed that polymerization of actin is modulated by the cytoskeletons as judged by their effect on the rate of actin polymerization.

Ankyrins↗
PubMed1985

Properties of red cell membrane proteins: mechanism of spectrin and band 4.1 interaction.

Interactions between human red cell's band 4.1 and spectrin were studied by fluorescence resonance energy transfer and batch microcalorimetry techniques. The association constant (Ka = 8.6 X 10(7) M-1), the stoichiometry (one molecule of band 4.1 to one molecule of spectrin), the reversibility, and the enthalpy (delta H = -6 kcal/mol) were determined. A proton uptake was observed to take place as a result of the spectrin-band 4.1 complex formation. In addition to the protonation of the reaction products, the entropic contribution (-T delta S) has been observed to be responsible for approximately 50% of the binding free energy. We concluded that the environment plays a significant role in the stabilization of the complex. Since band 4.1 has been required for the maintenance of the cytoskeletal stability, small alterations of the binding energies or the degree of interaction could have a pronounced effect on the structure of the erythrocyte membrane.

Blood Proteins↗
PubMed1984

Modulation of actin polymerization by the spectrin-band 4.1 complex.

The effect of human erythrocyte spectrin dimer and band 4.1 on the polymerization of actin was studied by two independent methods: by following the increase in fluorescence of actin covalently conjugated to N-pyrenyl-iodoacetamide (pyrenylactin) and by following the increase in light scattered by actin polymers. Both techniques indicated that the complex of spectrin dimer and band 4.1, but neither spectrin nor band 4.1 alone, stimulates the rate of nucleation (decreases the lag phase of polymerization) and stabilizes oligomers of F-actin. While the band 4.1-spectrin complex, but not spectrin alone, had no immediate effect on the rate of polymerization after the lag phase, it eventually decreases the rate of actin filament growth when the molecular ratio of actin-spectrin-band 4.1 approaches the physiological range. The complex has no detectable effect on the critical actin concentration and does not significantly alter the apparent order of the nucleation reaction.

Actins↗
PubMed1983

Effect of hemoglobin A and S on human erythrocyte ghosts.

The interaction of erythrocyte ghosts and vesicles with chromatographed hemoglobin (Hb) A and Hb S was studied under various conditions. Although no binding of either Hb A or Hb S to inside-out vesicles was detected, under conditions of physiological ionic strength and pH, several properties of white membrane ghosts were effected by the presence of Hb. Addition of Hb A and Hb S (2 g/dl) to membrane ghosts in 6 mM MgATP, 150 mM NaCl, 10 mM Tris-HCl buffer, pH 7.4, was found to effect the echinocyte-discocyte transition, the extent of endocytosis, the volume, and the sealing of ghosts. Our observations suggest that the structure of membrane ghosts is influenced by cytosol proteins and that the environment of the red cell membrane plays an important role in the definition and the control of the membrane structure and function.

Adenosine Triphosphate↗
PubMed1982

Some properties of the reaction site for the esterase activity of hemoglobin.

We have defined the predominant site of p-nitrophenyl acetate reaction with hemoglobin. The site is involved with, at least, two modes of action: the imidazole catalysis of His beta 2 and the irreversible covalent acetylation of Lys beta 82. The effect of competitive inhibition of the reaction by 2,3-diphosphoglyceric acid, the dependence of the reaction rate on the protein conformation, hemoglobin mutants, and the diethylpyrocarbonate are consistent with the assignment of the active site. In addition, the results point to small conformational differences in the NH-terminal regions of the beta chains between Hb S and Hb A.

Binding Sites↗
PubMed1981

Esterase activity of hemoglobin. Differences between HB A and HB S.

The hydrolysis of p-nitrophenyl acetate (p-NPA) is catalyzed by many proteins. We have observed that oxyhemoglobin A also exhibits esterase activity with a rate intermediate between that of bovine albumin and carbonic anhydrase. Kinetic studies of this reaction revealed that the rate of hydrolysis of p-NPA in the presence of oxy Hb S was approximately 2 times slower than that of oxy Hb A. There is general agreement that the catalytic effect of peptides and proteins on the hydrolysis of p-NPA is mediated by histidines. Oxy Hb Deer Lodge (His beta 2 leads to Arg) hydrolyzes p-NPA at a rate approaching that of oxy Hb S. Oxy Hb F, in turn, exhibits a rate indistinguishable from that of oxy Hb A. The effect of 2,3-diphosphoglyceric acid on the reaction is consistent with the participation of His beta 2 in this catalytic effect. The pH dependence of the reaction and studies with free amino acids also lend support to the involvement of a histidine residue. These results point to subtle conformational differences between oxy Hb S and oxy Hb A in solution, probably involving His beta 2 and/or its microenvironment. The catalytic hydrolysis of p-NPA can be considered a useful probe of conformational states of macromolecules.

Diphosphoglyceric Acids↗
PubMed1981

Esterase activity of hemoglobins: a conformational probe for difference between HbA and HbS.

(1) We have observed esterase of Hb A and Hb S. The reaction is consistent with general imidazole catalysis. (2) The rate f p-NPA hydrolysis by Hb A and Hb S is significantly different, probably due to subtle conformational alterations involving beta His 2 and/or its micro-environment in the mutant. (3) During this reaction, irreversible modification of Hb occurs, involving lysines (predominantly Lys beta 82).

Amino Acids↗
PubMed1980

The inhibitory effect of alkylureas and alkylamides on the gelation of hemoglobin S.

Analysis of the inhibition of gelation of deoxyhemoglobin S by the alkylureas and alkylamides, based on multiple equilibria formulation of the interactions of the inhibiting reagent and protein, is described and applied to minimum gelling concentration and saturation-solubility measurements in the presence of these inhibitors. Our principal expression which describes the influence of a given inhibiting reagent on the hemoglobin activity at the critical gelling concentration, (a)D = (a)w exp(N'KB[D]) has been used to predict the parameters expected of a given inhibitor, and also to provide information concerning the nature and the number of amino acids at the areas of contact of the hemoglobin tetramers that form the microtubular fibers of the gel phase of deoxyhemoglobin S. In this expression N' represents the effective number of amino acid sites per hemoglobin tetramer or the pregelation unit that enters the gelation reaction, KB is the interaction constant characterizing the interaction between the average amino acid and the inhibiting reagent, and [D] is the concentration of the inhibiting reagent. The analysis of our data includes correction for non-ideality. Our calculated gelling concentrations and saturation-solubilities are in good accord with the experimental data obtained with the various alkylureas and amides of increasing hydrophobicity or hydrocarbon content, demonstrating the utility of such analysis for the rational design of pharmacologically significant new reagents. In this regard it is to be noted that the interaction parameter, KB, used to predict the effectiveness of a given reagent is evaluated by assuming additivity of the group values of the chemical constituents of the reagent. Analysis of our data obtained as a function of concentration of several ureas (ethyl-, propyl-, butyl-, and n-pentylurea) gave N' estimates in the neighborhood of 80--100, suggesting that a substantial fraction of the surface groups of hemoglobin must be removed from contact with solvent in the course of the polymerization reaction that leads to the formation hemoglobin S gels.

Amides↗
PubMed1979

Hydergine and vincamine derivative LD 4298 exhibit no anti-sickling properties in vitro.

Amongst the treatments proposed for Sickle Cell disease Ergot derivatives and extracts from Pervinca have been proposed. We have studied in vitro the effect of Hydergine and LD 4298 on Sickle Cells and Sickle Hemoglobin according to the following four parameters: percentage of sickling, potassium leak, minimum gelation concentration and speed of gelation. In these studies no anti-sickling effect was detected. Moreover Hydergine at 50 microgram/ml increased spontaneous potassium loss without any anti-sickling effect. One can conclude that these two drugs have no effect on sickling.

Anemia, Sickle Cell↗
PubMed1978

Kinetics of HB S gelation. Effect of alkylureas, ionic strength and other hemoglobins.

Using a light scattering (turbidity) method to estimate the delay time of gelation of deoxy hemoglobin S hemolysates, we have examined the effects of various alkylureas, variations in ionic strength by addition of NaCl, and admixture with other hemoglobins on gelation kinetics. Each of these factors substantially prolonged the delay times to different extents, but the dependence of the delay times on a high power of the hemoglobin concentration varied only slightly. These findings suggest that the events preceding gelation, most likely the formation of nuclei, are affected by these factors, but the critical nuclear size for gelling is fairly constant. Parallel changes indicated good qualitative correlation between gelation, delay times, minimum gelling concentrations of solutions of mixed hemoglobins and kinetics of sickling of red cells containing these mixtures, with the exception of hemoglobin Charlem trait cells the sickling kinetics of which were slower than predicted by the solution properties.

Gels↗
PubMed1978

A comparison of cold and acid activation of big renin and of inactive renin in normal plasma.

Normal human plasma contains "inactive renin," whose ability to generate angiotensin I increases after exposure to pH 3.3. Big renin is a partially inactive enzyme of larger molecular weight, which is also activated at pH 3.3, and is found of pregnant women, and in amniotic fluid, but not in normal plasma. We have compared the effects of acid exposure and storage at 4 and -4 C on normal plasma and plasma containing big renin. The concentration of inactive renin in normal plasma was approximately equal to that of normal active renin, and its activity increased slowly on prolonged standing at -4 but not 4 C. In contrast, the activity of big renin increased by 50% as early as 1-3 days at 4 C and increased even more quickly at -4 C. Acid treatment of plasma containing big renin caused 4-10 times greater increase in active renin than similar treatment of normal plasma. During gel filtration, both cold-activated and previously acidified big renin coeluted with unactivated big renin. These data indicate that big renin is highly susceptible to cold or acid activation and that such activation of big renin does not result in a detectable decrease in its molecular weight of 60,000 daltons. Furthermore, acid and cold seem to activate the same pool of inactive renin in normal plasma. Although both normal and big renin are stable for long periods below -20 C, a serious overestimate of plasma renin activity can occur if plasma is stored just above its freezing point before assay.

Amniotic Fluid↗