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D H Lynn

Publications and source records attributed to D H Lynn.

At least 19 recordsLinked to original sources
PubMed2006

Contrasting soil ciliate species richness and abundance between two tropical plant species: a test of the plant effect.

We still have a rudimentary understanding about the mechanism by which plant roots may stimulate soil microbial interactions. A biochemical model involving plant-derived biochemical fractions, such as exudates, has been used to explain this "rhizosphere effect" on bacteria. However, the variable response of other soil microbial groups, such as protozoa, to the rhizosphere suggests that other factors could be involved in shaping their communities. Thus, two experiments were designed to: (1) determine whether stimulatory and/or inhibiting factors associated with particular plant species regulate ciliate diversity and abundance and (2) obtain a better understanding about the mechanism by which these plant factors operate in the rhizosphere. Bacterial and chemical slurries were reciprocally exchanged between two plant species known to differ in terms of ciliate species richness and abundance (i.e., Canella winterana and plantation Tectona grandis). Analysis of variance showed that the bacteria plus nutrients and the nutrients only treatment had no significant effect on overall ciliate species richness and abundance when compared to the control treatment. However, the use of only colpodean species increased the taxonomic resolution of treatment effects revealing that bacterial slurries had a significant effect on colpodean ciliate species richness. Thus, for particular rhizosphere ciliates, biological properties, such as bacterial diversity or abundance, may have a strong influence on their diversity and possibly abundance. These results are consistent with a model of soil bacteria-mediated mutualisms between plants and protozoa.

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PubMed2001

Parallel evolution of histophagy in ciliates of the genus Tetrahymena.

BACKGROUND: Species of Tetrahymena were grouped into three complexes based on morphological and life history traits: the pyriformis complex of microstomatous forms; the patula complex of microstome-macrostome transformers; and the rostrata complex of facultative and obligate histophages. We tested whether these three complexes are paraphyletic using the complete sequence of the small subunit rDNA (SSrDNA). RESULTS: In addition to the 16 species of Tetrahymena whose SSrDNA sequences are known, we sequenced the complete SSrDNA from the following histophagous Tetrahymena species; Tetrahymena bergeri, Tetrahymena mobilis, Tetrahymena rostrata, and Tetrahymena setosa as well as the macrostome species Tetrahymena vorax. We also included a ciliate tentatively identified as Lambornella sp., a parasite of the mosquito Aedes sp. We confirmed earlier results using SSrDNA, which showed two distinct clusters of Tetrahymena species: the australis group and borealis group. The genetic distances among Tetrahymena are in general very small. However, all nodes were supported by high bootstrap values. With the exception of T. bergeri and T. corlissi, which are both histophagous and group as sister species, all other histophagous Tetrahymena species are most closely related to a bacterivorous species. Furthermore, Lambornella sp. and T. empidokyrea, both mosquito parasites, are sister species, although there is a considerable genetic distance between them. CONCLUSIONS: There has been parallel evolution of histophagy in the genus Tetrahymena and the three classical species complexes are paraphyletic. As the genus Lambornella arises within the Tetrahymena clade, it is not likely a defensible one.

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PubMed2000

Phylogenetic relationships of the genus Paramecium inferred from small subunit rRNA gene sequences.

The genus Paramecium includes species that are well known and very common in freshwater environments. Species of Paramecium are morphologically divided into two distinct groups: the "bursaria" subgroup (foot-shaped) and the "aurelia" subgroup (cigar-shaped). Their placement within the class Oligohymenophorea has been supported by the analysis of the small subunit rRNA gene sequence of P. tetraurelia. To confirm the stability of this placement and to resolve relationships within the genus, small subunit rRNA gene sequences of P. bursaria, P. calkinsi, P. duboscqui, P. jenningsi, P. nephridiatum, P. primaurelia, and P. polycaryum were determined and aligned. Trees constructed using distance-matrix, maximum-likelihood, and maximum-parsimony methods all depicted the genus as a monophyletic group, clustering with the other oligohymenophorean taxa. Within the Paramecium clade, P. bursaria branches basal to the other species, although the remaining species of the morphologically defined "bursaria" subgroup do not group with P. bursaria, nor do they form a monophyletic subgroup. However, the species of the "aurelia" subgroup are closely related and strongly supported as a monophyletic group.

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PubMed1999

Phylogenetic position of the kinetoplastids, Cryptobia bullocki, Cryptobia catostomi, and Cryptobia salmositica and monophyly of the genus Trypanosoma inferred from small subunit ribosomal RNA sequences.

Phylogenetic relationships within the kinetoplastid flagellates were inferred from comparisons of small-subunit ribosomal RNA gene sequences. These included three new gene sequences from Cryptobia bullocki, (2091 bp), Cryptobia catostomi (2090 bp), and Cryptobia salmositica (2091 bp). Trees produced using maximum parsimony and distance-matrix methods (least squares and neighbor-joining) demonstrated with strong bootstrap support, that the kinetoplastids are a monophyletic group divided into two major lineages consistent with the two suborders, Trypanosomatina and Bodonina. Within the trypanosomatid clade, the genus Trypanosoma is a monophyletic group that divides into two groups, the salivarian trypanosomes and the stercorarian trypanosomes. Dimastigella and Rhynchobodo, currently classified in the Bodonina, are basal to the trypanosomatid-bodonid clade, suggesting that the suborder Bodonina is paraphyletic. Further, Trypanoplasma borreli grouped within the Cryptobia clade, and was more closely related to C. salmositica than to either C. bullocki or C. catostomi. This new molecular evidence, coupled with morphological similarities of the two genera, again calls into question the validity of the genus Trypanoplasma.

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PubMed1998

Phylogenetic relationships between prostome and colpodean ciliates tested by small subunit rRNA sequences.

We analyzed the phylogenetic relationships among the four ciliate classes, Prostomatea, Colpodea, Nassophorea, and Litostomatea, by small subunit ribosomal RNA gene sequence comparison to test several phylogenetic hypotheses that had been proposed for these classes, based on ultrastructural features. The complete coding regions of the prostomes, Prorodon teres and Coleps hirtus, and of the colpodean, Bursaria truncatella, were determined and compared to the database and the literature. The prostomes and colpodeans are strongly supported as monophyletic groups in all analyses. A sister-group relationship between prostomes and colpodeans is strongly supported by parsimony analyses and moderately supported by distance matrix analyses. There was no support for a close relationship between colpodeans and nassophoreans or between colpodeans and litostomes. In all analyses, these four classes branch late in the ciliate tree. This finding further supports the new view of ciliate phylogeny that so-called ancestral taxa, such as the "primitive" prostomes, are in fact derived and that so-called "highly evolved" groups, such as the heterotrichs, branch off very early in the ciliate tree.

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PubMed1995

Phylogeny of the fish parasite Ichthyophthirius and its relatives Ophryoglena and Tetrahymena (Ciliophora, Hymenostomatia) inferred from 18S ribosomal RNA sequences.

Phylogenetic relationships within the subclass Hymenostomatia were inferred from the comparisons of three new SSrRNA gene sequences from Ichthyophthirius multifiliis (1,751 bp), Ophryoglena catenula (1,748 bp), and Tetrahymena corlissi (1,753 bp). Using maximum-parsimony and distance-matrix methods, Ichthyophthirius and Ophryoglena were consistently paired and formed a sister group to the tetrahymenines, consistent with their placement in the Ophryoglenina. Tetrahymenids formed a monophyletic group that was divided into main lineages: T. corlissi diverged from the base of the lineage that included T. thermophila.

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PubMed1991

Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, inferred from the complete small subunit rRNA gene sequences of Colpidium campylum, Glaucoma chattoni, and Opisthonecta henneguyi.

Phylogenetic relationships within the class Oligohymenophorea, phylum Ciliophora, were investigated by determining the complete small subunit rRNA (SSrRNA) gene sequences for the hymenostomes Colpidium campylum, Glaucoma chattoni, and the peritrich Opisthonecta henneguyi. The affiliations of the oligohymenophoreans were assessed using both distance matrix (DM) and maximum parsimony (MP) analyses. Variations do exist in the phylogenies created by the two methods. However, the basic tree topologies are consistent. In both the DM and MP analyses the hymenostomes (C. campylum, G. chattoni, and the tetrahymenas) all form a very tight group associated with the peritrich O. henneguyi. The Tetrahymena lineage was monophyletic whereas Colpidium and Glaucoma were more closely related to each other than either was to the tetrahymenas. The monophyly of the genus Tetrahymena in the present analysis supports the phylogenies determined from morphological data and molecular sequence data from the histone H3II/H4II region of the genome. The perplexing and controversial phylogenetic position of the peritrichs is once again depicted in the present analysis. The distinctiveness of the peritrich Opisthonecta from both hymenostome and nassophorean ciliates based on evolutionary distances suggests that the elevation of the peritrichs to a higher taxonomic rank should be reconsidered.

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PubMed1988

Assessment of phylogenetic relationships among ciliated protists using partial ribosomal RNA sequences derived from reverse transcripts.

Partial sequences were derived for the 16S-like ribosomal RNA of Halteria grandinella, Glaucoma chattoni, Colpidium campylum, Opisthonecta henneguyi and Colpoda inflata. Using isolated bulk nucleic acid preparations, partial rRNA sequences were determined using a series of oligonucleotide primers complementary to conserved sequence elements of the molecule and a dideoxynucleotide sequencing reaction using reverse transcriptase. Sequences were aligned and an evolutionary tree was generated by a distance-matrix method, comparing these partial sequences to the complete sequences of species of Tetrahymena, Paramecium, Euplotes, Oxytricha and Stylonychia. Halteria shows greater similarity to the stichotrichs Oxytricha and Stylonychia than to the hypotrich Euplotes, while these four genera share the same branch. Glaucoma and Colpidium appear closely related to Tetrahymena, with all three being more closely related to Opisthonecta than to Paramecium. Colpoda diverges near the base of the branch shared by Paramecium and the four oligohymenophorean genera. These results are discussed with reference to published revisions of the systematics of the phylum Ciliophora.

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PubMed1988

Cytoterminology of cortical components of ciliates: somatic and oral kinetids.

The terminology of cortical structures in ciliated protists is determined partly by the organizational perspective from which these organisms are viewed. A general descriptive terminology is to be preferred to a particular and specialized one since the latter approach will lead to inflation in the number of terms. For the components of the ciliate kinetid, postciliary (microtubular) ribbons, transverse (microtubular) ribbons, nematodesma and kinetodesmal fibril are preferred terms. One, two and more than two kinetosome kinetids are referred to as mono-, di- and polykinetids, whether in somatic or oral regions of the cortex. In the oral region, adoral, circumoral, and paroral are the preferred descriptive adjectives, modified by the name of the taxonomic category in which the structures are found.

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PubMed1988

An update on the systematics of the phylum Ciliophora doflein, 1901: the implications of kinetid diversity.

Recent classifications of the phylum Ciliophora are compared with the system proposed by Small and Lynn in 1981 and revised in 1985. The classes COLPODEA, PHYLLOPHARYNGEA, OLIGOHYMENOPHOREA and NASSOPHOREA sensu Small & Lynn are considered monophyletic by a number of researchers. The classes LITOSTOMATEA and PROSTOMATEA sensu Small & Lynn are not as well accepted. Some divergence of opinion arises in recognition of the categories included in the classes KARYORELICTEA and SPIROTRICHEA sensu Small & Lynn, in which the great diversity of cortical ultrastructure is still not recognized in the taxonomy. Numerous minor groups, for example the phacodiniids, plagiopylids and schizocaryids, present taxonomic problems that may not be solved by ultrastructural examination. This is also true of the subphyletic divisions where there are substantial differences of opinion about relationships among the classes.

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PubMed1987

The use of silver nitrate staining and backscattered electron imaging to visualize nematode sensory structures.

Parasitic nematodes of the species Cosmocercoides variabilis were stained with silver nitrate and examined with backscattered electron imaging (BEI). Sensory papillae were selectively highlighted in backscatter images. Silver stain deposited on papillae was located on the papillary surface as well as on the underlying dendritic process. Portions of the body cuticle were also stained. Some cuticular staining was attributed to non-specific deposition of silver but, consistent patterns of cuticular staining were noted in the anterior and posterior regions. This observation suggests that some staining of the cuticle was specific. Results of this preliminary work suggest that BEI is a technique useful to the study of nematode form.

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PubMed1985

Cortical ultrastructure of Coleps bicuspis Noland, 1925 and the phylogeny of the class Prostomatea (Ciliophora).

The ultrastructure of Coleps bicuspis Noland, 1925 is described. The ciliate is a typical prostomate: the somatic kinetid is a monokinetid with a postciliary ribbon at triple 9, a kinetodesmal fibril originating near triplets 5, 6, 7 and an apparently radial transverse ribbon at triplet 4. The oral area is circular and has three brosse kineties associated with it. The brosse kineties are composed of dikinetids whose anterior kinetosome bears a tangential transverse ribbon and whose posterior kinetosome bears the fibrillar associates typical of a somatic monokinetid. The oral dikinetids are oriented parallel to the circumference of the oral cavity, which is surrounded by oral papillae and oral ridges. Pairs of nematodesmata, originating from oral dikinetid kinetosomes, are typically triangular in transection. A phylogeny of rhabdophoran ciliates is presented using the mixed parsimony algorithm and is discussed with reference to the systematic revisions of the phylum Ciliophora.

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PubMed1981

Protist kinetids: structural conservatism, kinetid structure, and ancestral states.

The protist kinetid is considered a conservative indicator of phylogenetic relationship. This conclusion is supported by the apparently inverse relationship between the conservation of structure and its level in the organizational hierarchy. A comparative examination of features of protist kinetids indicates that pattern is strongly conserved; within and among flagellate taxa there is more variability in pattern than within the ciliates. It is concluded that the ancestral flagellate kinetid is a pair of orthogonally oriented kinetosomes having one striated rootlet and at least one microtubular ribbon. The ancestral kinetid of the ciliates is also a dikinetid structure, though represented by a paired set of parallel kinetosomes, probably similar to that found today in karyorelictid ciliates, presumptive descendants of the ancestral stock.

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PubMed1981

A new macrosystem for the phylum Ciliophora doflein, 1901.

A new macrosystem for the phylum Ciliophora is described. It is based primarily on the concept of the structural conservatism of the cortical fibrillar structures. Three subphyla, the Postciliodesmatophora, Rhabdophora, and Cyrtophora, are described. These three subphyla are divided respectively into the following classes: (1) the Postciliodesmatophora, into the Karyorelictea and Spirotrichea; (2) Rhabdophora, into the Prostomea and the Litostomea n, nov.; and (3) Cyrtophorea, into the Nassophorea n. nov., Phyllopharyngea, Coipodea, and Oligohymenophorea. The subclass divisions of these eight classes are briefly discussed. Problem areas are indicated where further research will test the relationship proposed by this new macrosystem.

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PubMed1978

Size increase and form allometry during evolution of ciliate species in the genera Colpoda and Tillina (Ciliophora: Colpodida).

With the absence of a fossil record to provide direct evidence of evolutionary relationships, many researchers have inferred by circular reasoning that body size increase and form allometry have occurred during the evolution of ciliated protozoa. This study establishes ancestor-descendant relationships among five species of the related genera Colpoda and Tillina using ultrastructural characteristics which are not apparently dependent on size and form. This independent test suggests that phylogenetic size increase and phylogenetic form allometry have occurred during the evolution of these ciliates. Interrelationships of body size increase, increase in number of cortical organelles, and form allometry are discussed in reference to the divergence of these ciliate species.

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PubMed1976

Cell size and proportional distance assessment during determination of organelle position in the cortex of the ciliate Tetrahymena.

Developing oral organelles of dividing Tetrahymena corlissi appear to be positioned by mechanisms which assess distances as a proportion of the organism's overall dimensions. In some respects, the cortex of this protozoan obeys the 'French flag' rule formulated by Wolpert for describing regulation of spatial proportions during differentiation of metazoan embryos. Dividing Tetrahymena of markedly different sizes occur when division is synchronized by starvation and refeeding. At the start of cell division, the distance between old and new mouthparts varies proportionately with respect to cell length. In addition, determination of the site where new oral organelles will develop is apparently not directly related to the number of ciliated basal bodies which separate the 2 sets of mouthparts; the greater the distance between the old and developing sets of mouthparts, the greater the number of ciliated basal bodies in the rows between them. It is suggested that 2 distinct mechanisms are largely responsible for defining organelle position in ciliates. The new terms structural positioning and chemical signalling are defined to describe these mechanisms.

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