Biomedical subjects

D J Batstone

Publications and source records attributed to D J Batstone.

At least 19 recordsLinked to original sources

PubMed2006

Multidimensional modelling to investigate interspecies hydrogen transfer in anaerobic biofilms.

Anaerobic digestion is a multistep process, mediated by a functionally and phylogenetically diverse microbial population. One of the crucial steps is oxidation of organic acids, with electron transfer via hydrogen or formate from acetogenic bacteria to methanogens. This syntrophic microbiological process is strongly restricted by a thermodynamic limitation on the allowable hydrogen or formate concentration. In order to study this process in more detail, we developed an individual-based biofilm model which enables to describe the processes at a microbial resolution. The biochemical model is the ADM1, implemented in a multidimensional domain. With this model, we evaluated three important issues for the syntrophic relationship: (i) Is there a fundamental difference in using hydrogen or formate as electron carrier? (ii) Does a thermodynamic-based inhibition function produced substantially different results from an empirical function? and; (iii) Does the physical co-location of acetogens and methanogens follow directly from a general model. Hydrogen or formate as electron carrier had no substantial impact on model results. Standard inhibition functions or thermodynamic inhibition function gave similar results at larger substrate field grid sizes (> 10 microm), but at smaller grid sizes, the thermodynamic-based function reduced the number of cells with long interspecies distances (> 2.5 microm). Therefore, a very fine grid resolution is needed to reflect differences between the thermodynamic function, and a more generic inhibition form. The co-location of syntrophic bacteria was well predicted without a need to assume a microbiological based mechanism (e.g., through chemotaxis) of biofilm formation.

Bacteria, Anaerobic↗

PubMed2006

Impact of reactive settler models on simulated WWTP performance.

Including a reactive settler model in a wastewater treatment plant model allows representation of the biological reactions taking place in the sludge blanket in the settler, something that is neglected in many simulation studies. The idea of including a reactive settler model is investigated for an ASM1 case study. Simulations with a whole plant model including the non-reactive Takács settler model are used as a reference, and are compared to simulation results considering two reactive settler models. The first is a return sludge model block removing oxygen and a user-defined fraction of nitrate, combined with a non-reactive Takács settler. The second is a fully reactive ASM1 Takács settler model. Simulations with the ASM1 reactive settler model predicted a 15.3% and 7.4% improvement of the simulated N removal performance, for constant (steady-state) and dynamic influent conditions respectively. The oxygen/nitrate return sludge model block predicts a 10% improvement of N removal performance under dynamic conditions, and might be the better modelling option for ASM1 plants: it is computationally more efficient and it will not overrate the importance of decay processes in the settler.

Kinetics↗

PubMed2006

Efficient modelling necessitates standards for model documentation and exchange.

In this paper, problems related to simulation model documentation and model exchange between users are discussed. Complex simulation models have gained popularity in the environmental field, but require extensive documentation to allow independent implementation. The existence of different simulation platforms puts high demands on the quality of the original documentation. Recent experiences from cross-platform implementations with the ASM2d and ADM1 models reveal that error-free model documentation is difficult to obtain, and as a consequence, considerable time is spent on searching for documentation and implementation errors of various sources. As such, the list of errors and coding pitfalls provided for ASM2d and ADM1 in this paper is vital information for any future implementation of both models. The time needed to obtain an error-free model implementation can be significantly reduced if a standard language for model documentation and exchange is adopted. The extensible markup language (XML) and languages based on this format may provide a remedy to the problem of platform independent model documentation and exchange. In this paper the possibility to apply this to environmental models is discussed, whereas the practical model implementation examples corroborate the necessity for a standardised approach.

Documentation↗

PubMed2006

Lessons learnt from 15 years of ICA in anaerobic digesters.

Anaerobic digestion plants are highly efficient wastewater treatment processes with inherent energy production. Despite these advantages, many industries are still reluctant to use them because of their instability confronted with changes in operating conditions. There is therefore great potential for application of instrumentation, control and automation (ICA) in the field of anaerobic digestion. This paper will discuss the requirements (in terms of on-line sensors needed, modelling efforts and mathematical complexity) but also the advantages and drawbacks of different control strategies that have been applied to AD high rate processes over the last 15 years.

Automation↗

PubMed2006

Simulation of DEHP biodegradation and sorption during the anaerobic digestion of secondary sludge.

Di-ethylhexyl phthalate (DEHP) has commonly been found in the sludge of municipal wastewater treatment plants especially during anaerobic processing. It is slowly biodegradable under anaerobic conditions. Due to its high hydrophobicity, sorption-desorption processes can be rate-limiting for the compound biodegradation. In this study, the anaerobic biodegradation of DEHP was investigated through batch kinetic experiments and dynamic transitions of a continuous stirred tank reactor (CSTR) fed with secondary sludge contaminated with DEHP. A widely accepted model (ADM1) was used to fit the anaerobic digestion of secondary sludge and was properly extended to account for DEHP removal, in which mass transfer processes are also involved. It was shown that DEHP removal was limited by the transfer of DEHP within the solid fraction. The criterion selected for the distinction of the two sites was whether the compound sorbed in those sites was bioavailable for biodegradation or not. Thus, the aqueous phase and the surface of the biosolids were considered as suitable sites for the compound to be bioavailable and the main bulk of the solid matrix was regarded as sites, where the compound remains "protected" against biodegradation. The model, fitted to the batch experimental data, was able to predict DEHP removal in the CSTR operated at various HRTs.

Anaerobiosis↗

PubMed2006

A review of ADM1 extensions, applications, and analysis: 2002-2005.

Since publication of the Scientific and Technical Report (STR) describing the ADM1, the model has been extensively used, and analysed in both academic and practical applications. Adoption of the ADM1 in popular systems analysis tools such as the new wastewater benchmark (BSM2), and its use as a virtual industrial system can stimulate modelling of anaerobic processes by researchers and practitioners outside the core expertise of anaerobic processes. It has been used as a default structural element that allows researchers to concentrate on new extensions such as sulfate reduction, and new applications such as distributed parameter modelling of biofilms. The key limitations for anaerobic modelling originally identified in the STR were: (i) regulation of products from glucose fermentation, (ii) parameter values, and variability, and (iii) specific extensions. Parameter analysis has been widespread, and some detailed extensions have been developed (e.g., sulfate reduction). A verified extension that describes regulation of products from glucose fermentation is still limited, though there are promising fundamental approaches. This is a critical issue, given the current interest in renewable hydrogen production from carbohydrate-type waste. Critical analysis of the model has mainly focused on model structure reduction, hydrogen inhibition functions, and the default parameter set recommended in the STR. This default parameter set has largely been verified as a reasonable compromise, especially for wastewater sludge digestion. One criticism of note is that the ADM1 stoichiometry focuses on catabolism rather than anabolism. This means that inorganic carbon can be used unrealistically as a carbon source during some anabolic reactions. Advances and novel applications have also been made in the present issue, which focuses on the ADM1. These papers also explore a number of novel areas not originally envisaged in this review.

Anaerobiosis↗

PubMed2005

Hydraulics of laboratory and full-scale upflow anaerobic sludge blanket (UASB) reactors.

Laboratory-scale upflow anaerobic sludge blanket (UASB) reactors are often used as test platforms to evaluate full-scale applications. However, for a given volume specific hydraulic loading rate and geometry, the gas and liquid flows increase proportionally with the cube root of volume. In this communication, we demonstrate that a laboratory-scale reactor had plug-flow hydraulics, while a full-scale reactor had mixed flow hydraulics. The laboratory-scale reactor could be modeled using an existing biochemical model, and parameters identified, but because of computational speed with plug-flow hydraulics, mixed systems are instead recommended for parameter identification studies. Because of the scaling issues identified, operational data should not be directly projected from laboratory-scale results to the full-scale design.

Anaerobiosis↗

PubMed2005

Anaerobic digestion: impact of future greenhouse gases mitigation policies on methane generation and usage.

The debate as to whether carbon dioxide, methane, nitrous oxide and other greenhouse gas emissions will become subject to increasing regulation, increased restrictions, and probably to some form of carbon tax, has moved from a simple "yes" or "no" to "when". Wastewater treatment plants will be significantly impacted by increased energy costs and by specific regulations and/or penalties associated with emissions of methane and nitrous oxide. In this paper, the greenhouse gases emissions of different wastewater process options are estimated. The paper outlines the increasing need for wastewater treatment plants to factor greenhouse gas mitigation issues into their medium- as and long-term strategies, and identifies anaerobic enhouse as processes as being at the core of such strategies. Further, the paper identifies a number of key research challenges to be addressed if such strategies are to play a larger role in attenuating the likely impacts of GHG mitigation requirements on wastewater treatment plant design and operation.

Air Pollutants↗

PubMed2005

Online headspace chromatographic method for measuring VFA in biogas reactor.

A headspace chromatographic method has been applied to measure volatile fatty acids in anaerobic digesters using gas phase extraction at pH less than 2 and temperature higher than 65 degrees C. The concentration of volatile fatty acids in liquid and gas phase can be correlated in the form of Henry's coefficient. Analysis of different factors in the batch indicated that pH, temperature, and salt addition had a strong impact on apparent solubility, while liquid/gas volume ratio and organic acid concentration had little impact. Larger liquid volume had a positive impact on extraction efficiency, while increased gas headspace had a negative impact, indicating that the system was total mass-limited. The best conditions were at pH < 2.0, and temperatures above 75 degrees C. The advantage of an automated gas-extraction system for organic acid analysis, compared to an automated liquid system is that it contains no filter element, which is 4 susceptible to fouling in manure samples or samples with high solid content. An automated system which included a valerate pulse to the parent reactor was implemented, and operated for a short period.

Animals↗

PubMed2005

Multidimensional modelling of anaerobic granules.

A multispecies, two- and three-dimensional model was developed, based on a previously published planar biofilm model, and the biochemical structure of the ADM1. Several soluble substrates diffuse and react in the granule. Local pH is calculated from acid-base equilibria and charge balance. The model uses individual-based representation of biomass particles within the granule (biofilm), and describes spreading by an iterative pushing technique. The overall computational domain consists of one granule, and is divided into a grid with Cartesian coordinates. The number of grid elements does not limit the number of biomass particles, and it is not necessary to use grid-spreading techniques, such as cellular automata, which result in Cartesian artefacts. The model represents both microscopic and macroscopic features in granule structure, previously observed using in-situ molecular techniques, and can be effectively used to interpret these results.

Acetates↗

PubMed2004

The influence of substrate kinetics on the microbial community structure in granular anaerobic biomass.

The development of a strong, active granular sludge bed is necessary for optimal operation of upflow anaerobic sludge blanket reactors. The microbial and mechanical structure of the granules may have a strong influence on desirable properties such as growth rate, settling velocity and shear strength. Theories have been proposed for granule microbial structure based on the relative kinetics of substrate degradation, but contradict some observations from both modelling and microscopic studies. In this paper, the structures of four granule types were examined from full-scale UASB reactors, treating wastewater from a cannery, a slaughterhouse, and two breweries. Microbial structure was determined using fluorescence in situ hybridisation probing with 16S rRNA-directed oligonucleotide probes, and superficial structure and microbial density (volume occupied by cells and microbial debris) assessed using scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The granules were also modelled using a distributed parameter biofilm model, with a previously published biochemical model structure, biofilm modelling approach, and model parameters. The model results reflected the trophic structures observed, indicating that the structures were possibly determined by kinetics. Of particular interest were results from simulations of the protein grown granules, which were predicted to have slow growth rates, low microbial density, and no trophic layers, the last two of which were reflected by microscopic observations. The primary cause of this structure, as assessed by modelling, was the particulate nature of the wastewater, and the slow rate of particulate hydrolysis, rather than the presence of proteins in the wastewater. Because solids hydrolysis was rate limiting, soluble substrate concentrations were very low (below Monod half saturation concentration), which caused low growth rates.

Abattoirs↗

PubMed2004

Improved nitrogen removal in upflow anaerobic sludge blanket (UASB) reactors by incorporation of Anammox bacteria into the granular sludge.

Upflow anaerobic sludge blanket reactors may offer a number of advantages over conventional mixed-tank, SBR, and biofilm reactors, including high space-loading, low footprint, and resistance to shocks and toxins. In this study, we assessed the use of upflow anaerobic sludge blanket (UASB) reactor technology as applied to anaerobic ammonia removal, or Anammox. Four 200 ml UASB reactors were inoculated with 50% (by volume) anaerobic granular sludge and 50% flocular sludge from different sources (all with the potential for containing Anammox organisms). Tools used to assess the reactors included basic analyses, fluorescent in-situ hybridisation, and mathematical modelling, with statistical non-linear parameter estimation. Two of the reactors showed statistically identical Anammox activity (i.e., identical kinetic parameters), with good ammonia and nitrite removal (0.14 kgNHx m(-3) reactor day(-1), with 99% ammonia removal). The third reactor also demonstrated significant Anammox activity, but with poor identifiability of parameters. The fourth reactor had no statistical Anammox activity. Modelling indicated that poor identifiability and performance in the third and fourth reactors were related to an excess of reduced carbon, probably originating in the inoculum. Accumulation of Anammox organisms was confirmed both by a volume loading much lower than the growth rate, and response to a probe specific for organisms previously reported to mediate Anammox processes. Overall, the UASB reactors were effective as Anammox systems, and identifiability of the systems was good, and repeatable (even compared to a previous study in a rotating biological contactor). This indicates that operation, design, and analysis of Anammox UASB reactors specifically, and Anammox systems in general, are reliable and portable, and that UASB systems are an appropriate technology for this process.

Ammonia↗

PubMed2004

Removal of polycyclic aromatic hydrocarbons (PAHs) from sewage sludge by anaerobic degradation.

Due to the hydrophobic nature of the polyaromatic hydrocarbons (PAHs) they are mostly bound to the sludge and escape aerobic treatment in a wastewater treatment plant. They therefore proceed directly to the anaerobic post treatment, terminate in the sludge, and can be released to the environment if land spreading is used. PAH degradation in anaerobic methanogenic systems has only recently been shown to occur. In this study we have assessed several factors of anaerobic PAH degradation by evaluating thermodynamic feasibility of degradation, assessing degradation at different temperatures, and investigating the enriched cultures using fluorescent in-situ hybridization (FISH). Thermodynamic calculations indicated that PAH degradation was possible under methanogenic conditions, in the presence of hydrogen utilizing methanogens. Removal of naphthalene and 1-methyl naphthalene depended both on temperature and the initial inoculum. Inocula sourced from contaminated land sites were the most effective. The enrichments were all a mixture of Bacteria, and Archaea, and the Archaea were generally identified as Methanobacteriales, using an order-specific probe. The bacteria were not specifically identified. The results indicate a syntrophic culture, with the bacteria oxidizing the naphthalene, and the Archaea converting the hydrogen produced by oxidation, to methane.

Bacteria, Anaerobic↗

PubMed2004

Use of an anaerobic sequencing batch reactor for parameter estimation in modelling of anaerobic digestion.

The model structure in anaerobic digestion has been clarified following publication of the IWA Anaerobic Digestion Model No. 1 (ADM1). However, parameter values are not well known, and uncertainty and variability in the parameter values given is almost unknown. Additionally, platforms for identification of parameters, namely continuous-flow laboratory digesters, and batch tests suffer from disadvantages such as long run times, and difficulty in defining initial conditions, respectively. Anaerobic sequencing batch reactors (ASBRs) are sequenced into fill-react-settle-decant phases, and offer promising possibilities for estimation of parameters, as they are by nature, dynamic in behaviour, and allow repeatable behaviour to establish initial conditions, and evaluate parameters. In this study, we estimated parameters describing winery wastewater (most COD as ethanol) degradation using data from sequencing operation, and validated these parameters using unsequenced pulses of ethanol and acetate. The model used was the ADM1, with an extension for ethanol degradation. Parameter confidence spaces were found by non-linear, correlated analysis of the two main Monod parameters; maximum uptake rate (k(m)), and half saturation concentration (K(S)). These parameters could be estimated together using only the measured acetate concentration (20 points per cycle). From interpolating the single cycle acetate data to multiple cycles, we estimate that a practical "optimal" identifiability could be achieved after two cycles for the acetate parameters, and three cycles for the ethanol parameters. The parameters found performed well in the short term, and represented the pulses of acetate and ethanol (within 4 days of the winery-fed cycles) very well. The main discrepancy was poor prediction of pH dynamics, which could be due to an unidentified buffer with an overall influence the same as a weak base (possibly CaCO3). Based on this work, ASBR systems are effective for parameter estimation, especially for comparative wastewater characterisation. The main disadvantages are heavy computational requirements for multiple cycles, and difficulty in establishing the correct biomass concentration in the reactor, though the last is also a disadvantage for continuous fixed film reactors, and especially, batch tests.

Acetates↗

PubMed2003

Kinetics of thermophilic, anaerobic oxidation of straight and branched chain butyrate and valerate.

The degradation kinetics of normal and branched chain butyrate and valerate are important in protein-fed anaerobic systems, as a number of amino acids degrade to these organic acids. Including activated and primary wastewater sludge digesters, the majority of full-scale systems digest feeds with a significant or major fraction of COD as protein. This study assesses the validity of using a common kinetic parameter set and biological catalyst to represent butyrate, n-valerate, and i-valerate degradation in dynamic models. The i-valerate degradation stoichiometry in a continuous, mixed population system is also addressed, extending previous pure-culture and batch studies. A previously published mathematical model was modified to allow competitive uptake of i-valerate, and used to model a thermophilic manure digester operated over 180 days. The digester was periodically pulsed with straight and branched chain butyrate and valerate. Parameters were separately optimized to describe butyrate, i-valerate, and n-valerate degradation, as well as a lumped set optimized for all three substrates, and nonlinear, correlated parameter spaces estimated using an F distribution in the objective function (J). Each parameter set occupied mutually exclusive parameter spaces, indicating that all were statistically different from each other. However, qualitatively, the influence on model outputs was similar, and the lumped set would be reasonable for mixed acid digestion. The main characteristic not represented by Monod kinetics was a delay in i-valerate uptake, and was compensated for by a decreased maximum uptake rate (k(m)). Therefore, the kinetics need modification if fed predominantly i-valerate. Butyrate (i- and n-) and n-valerate could be modeled using stoichiometry consistent with beta-oxidation degradation pathways. However, i-valerate produced acetate only, supporting the stoichiometry of a reaction determined by other researchers in pure culture. Therefore, lumping i-valerate stoichiometry with that of n-valerate will not allow good system representation, especially when the feed consists of proteins high in leucine (which produces i-valerate), and the modified model structure and stoichiometry as proposed here should be used. This requires no additional kinetic parameters and one additional dynamic concentration state variable (i-valerate) in addition to the variables in the base model.

Acetates↗

PubMed2003

Industrial applications of the IWA anaerobic digestion model No. 1 (ADM1).

In this paper, the IWA anaerobic digestion model No. 1 (ADM1) is applied to two case studies from contract work on industrial treatment plants. The first was the assessment of acid addition for pH decrease and avoidance of calcium carbonate (CaCO3) precipitation in a paper mill fed UASB. The simulation work found, with a high degree of confidence, that acid dosing was neither economical for pH control, nor had any real effect on the CaCO3 levels present in the reactor. A specific calcium carbonate precipitation equation was added to the ADM1 to undertake this study. The second case study was an assessment of the benefits of thermophilic (as opposed to mesophilic operation) for reduced ammonia inhibition, improved stability and gas production in a solids digester at a gelatine production facility. Here, it was predicted that thermophilic operation could not attain either goal to a satisfactory extent. In addition to demonstrating the application of the ADM1 to the two systems, we have also assessed the predictions generated in the case studies in terms of quality and utility.

Bacteria, Anaerobic↗

PubMed2002

The influence of calcium on granular sludge in a full-scale UASB treating paper mill wastewater.

Calcium precipitation can have a number of effects on the performance of high-rate anaerobic performance including cementing of the sludge bed, limiting diffusion, and diluting the active biomass. The aim of this study was to observe the influence of precipitation in a stable full-scale system fed with high-calcium paper factory wastewater. Granules were examined from an upflow anaerobic sludge blanket reactor (volume 1,805 m3) at a recycled paper mill with a loading rate of 5.7-6.6 kgCOD.m(-3).d(-1) and influent calcium concentration of 400-700 gCa m(-3). The granules were relatively small (1 mm), with a 200-400 microm core of calcium precipitate as observed with energy dispersive X-ray spectroscopy. Compared to other granules, Methanomicrobiales not Methanobacteriales were the dominant hydrogen or formate utilisers, and putative acidogens were filamentous. The strength of the paper mill fed granules was very high when compared to granules from other full-scale reactors, and a partial linear correlation between granule strength and calcium concentration was identified.

Biomass↗

PubMed2002

The IWA Anaerobic Digestion Model No 1 (ADM1).

The IWA Anaerobic Digestion Modelling Task Group was established in 1997 at the 8th World Congress on Anaerobic Digestion (Sendai, Japan) with the goal of developing a generalised anaerobic digestion model. The structured model includes multiple steps describing biochemical as well as physicochemical processes. The biochemical steps include disintegration from homogeneous particulates to carbohydrates, proteins and lipids; extracellular hydrolysis of these particulate substrates to sugars, amino acids, and long chain fatty acids (LCFA), respectively; acidogenesis from sugars and amino acids to volatile fatty acids (VFAs) and hydrogen; acetogenesis of LCFA and VFAs to acetate; and separate methanogenesis steps from acetate and hydrogen/CO2. The physico-chemical equations describe ion association and dissociation, and gas-liquid transfer. Implemented as a differential and algebraic equation (DAE) set, there are 26 dynamic state concentration variables, and 8 implicit algebraic variables per reactor vessel or element. Implemented as differential equations (DE) only, there are 32 dynamic concentration state variables.

Bioreactors↗