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Biomedical subjects

D L Balkwill

Publications and source records attributed to D L Balkwill.

At least 37 records · Page 2Linked to original sources
PubMed1991

Physiological diversity and distributions of heterotrophic bacteria in deep cretaceous sediments of the atlantic coastal plain.

A series of 23 intact core segments was obtained from two distinct deep subsurface geological formations, the Middendorf and the Cape Fear formations, underlying the southeastern coastal plain of South Carolina. The Middendorf formation in this region consists of permeable, saturated, sandy sediments; the Cape Fear formation consists mainly of less permeable sediments. The core segments were separated by vertical distances ranging from several centimeters to 48 m. Aerobic chemoheterotrophic bacteria were enumerated on a dilute medium, and populations ranged from 3.1 to 6.4 log CFU g of sediment in the Middendorf cores and from below detection to 4.3 log CFU g in the Cape Fear cores. A total of 198 morphologically distinct colony types were isolated, purified, and subjected to 108 different physiological measurements. The isolates from the two formations were distinct (i.e., they produced substantially different response patterns to the various physiological measurements), as were those in different core samples from the same formation. Cluster analysis revealed 21 different biotypes based on similarities of 75% or higher in response patterns to 21 physiological assays. One biotype contained 57 (29%) of the subsurface isolates, 10 biotypes contained 5 or more isolates, and the remainder had 4 or fewer. The organic compounds that were most commonly metabolized by the subsurface bacteria included Tween 40 (85%) and beta-hydroxybutyric acid (60%). Organic acids, in general, were also commonly metabolized by the subsurface bacteria. Isolates from the Cape Fear core segments were capable of metabolizing a higher percentage of the substrates than were bacteria isolated from the Middendorf formation. Although the heterogeneous distributions of bacteria in deep subsurface sediments may make it difficult to use aquifer microcosms to predict in situ biotransformation rates, the diversity of the physiological properties of these organisms offers promise for in situ remediation of contaminants.

Journal Article↗
PubMed1989

Vertical and horizontal variations in the physiological diversity of the aerobic chemoheterotrophic bacterial microflora in deep southeast coastal plain subsurface sediments.

Aerobic chemoheterotrophic bacteria were isolated from surface soils and coastal plain subsurface (including deep aquifer) sediments (depths to 265 m) at a study site near Aiken, S.C., by plating on concentrated and dilute media. Morphologically distinct colonies were purified, and their responses to 21 selected physiological tests were determined. These isolates were quite diverse; 626 physiologically distinct types (i.e., types with a unique pattern of responses to the 21 tests) were detected among the 1,112 isolates obtained. Physiologically distinct types were isolated on concentrated and dilute media (only 11% overlap between the groups); isolates from surface soils and subsurface sediments were also quite different (only 3% overlap). The surface soil isolates more readily utilized all but 1 of 12 carbon sources offered, and a significantly larger proportion of them hydrolyzed esculin and gelatin. Only 4% of the subsurface isolates fermented glucose, even though 82% of them could use it aerobically. l-Malate and d-gluconate were utilized by at least 75% of the subsurface isolates, and seven other carbon sources were used by at least 40% of them. Subsurface isolates from different geological formations (depths) and, to a lesser extent, from the same geological formation at different boreholes differed distinctly in their group responses to certain physiological tests. Moreover, sediments from different depths and boreholes contained physiologically distinct types of bacteria. Thus, considerable bacterial diversity was observed in coastal plain subsurface sediments, even within defined geological formations.

Journal Article↗
PubMed1986

Improved flotation technique for microscopy of in situ soil and sediment microorganisms.

An improved flotation method for microscopy of in situ soil and sediment microorganisms was developed. Microbial cells were released into gellike flotation films that were stripped from soil and sediment aggregates as these aggregates were submerged in 0.5% solutions of polyvinylpyrrolidone. The use of polyvinylpyrrolidone solutions instead of water facilitated the release of films from saturated samples such as aquifer sediments as well as from typical surface soils. In situ microbial morphological characteristics could then be surveyed rapidly by light microscopy of films stained with acridine orange. This method effectively determined the ranges of morphological diversity in a variety of sample types. It also detected microcolonies and other spatial relationships among microbial cells. Only a small fraction (3.4 to 10.1%) of the microflora was released into the flotation films, but plating and direct evaluations by microscopy showed that this fraction was representative of the total population.

Journal Article↗
PubMed1985

Characterization of subsurface bacteria associated with two shallow aquifers in oklahoma.

The bacterial microflora of two shallow aquifers (saturated subsurface zones) in Oklahoma was characterized by direct observation with light and electron microscopy, by plating, and by examination of colony morphology and distribution. Isolated bacterial strains were also examined. Total cell counts varied only slightly (2.9 x 10 to 9.8 x 10 g [dry wt]) from sample to sample, whereas colony counts varied widely (6.3 x 10 to 6.5 x 10 CFU g [dry wt]). Colony counts on nutritionally rich media were lower than on low-nutrient media, especially in samples from the saturated zone. The variety of colony types growing on nutritionally rich media decreased with increasing depth and saturation. Colony counts of anaerobic bacteria also decreased with depth but were at least 100-fold lower than aerobic counts on most media. Cell morphologies of bacteria grown aerobically on plates included short rods, cocci, and actinomycete-like forms. Direct light microscopic observation of sediments revealed short, rod-shaped, and coccoid bacterial cells; endospores, actinomycete spores, and eucaryotic forms were not observed by light microscopy. Electron microscopic observation of bacteria released from the samples revealed that 85 to 90% of them were coccoid, gram-positive, Arthrobacter-like organisms, some of which were dividing or contained completed division septa; other types of gram-positive and gram-negative bacteria were present in lower numbers. Isolated bacterial strains were able to grow on both nutritionally rich and low-nutrient media. A higher proportion of gram-negative organisms was isolated than gram-positive organisms. Most of the isolates were capable of storing polyphosphate, poly-beta-hydroxybutyrate, or polysaccharide. The results of this study suggest that the microbial population of these two shallow aquifers is dominated by aerobic, nutritionally versatile bacteria that can subsist on low concentrations of organic compounds without forming specialized resting cells. Other types of microorganisms, such as facultatively anaerobic bacteria and microeucaryotes, may also be present, but they represent only a small fraction of the microflora.

Journal Article↗
PubMed1985

Effect of nitrogen starvation on the morphology and ultrastructure of the cyanobacterium Mastigocladus laminosus.

The effects of nitrogen starvation on the morphology and ultrastructure of the branching, filamentous cyanobacterium Mastigocladus laminosus were examined with light and electron microscopy. The internal ultrastructural characteristics of vegetative cells changed markedly during nitrogen starvation. Carboxysomes were degraded, while polyphosphate bodies and lipid bodies accumulated. The ultrastructure of mature heterocysts was also affected by nitrogen starvation; their intracytoplasmic membranes vesiculated to form vacuolelike structures and, eventually, large empty regions in the cytoplasm. Nitrogen starvation stimulated extensive heterocyst differentiation in M. laminosus, producing heterocyst frequencies of 17.5% in narrow filaments and 28.3% in wide filaments within 44 h after transfer to N-free conditions. Cells in wide filaments differentiated so extensively that only 16.8% of them failed to initiate the differentiation process within 44 h.

Cyanobacteria↗
PubMed1984

Heterocyst differentiation in the cyanobacterium Mastigocladus laminosus.

The morphological and ultrastructural aspects of heterocyst differentiation in the branching, filamentous cyanobacterium Mastigocladus laminosus were examined with light and electron microscopy. The earliest differentiation stages involved cytoplasmic changes, including (i) rapid degradation of carboxysomes, (ii) degradation of polysaccharide granules, and (iii) accumulation of electron-dense ribosomal or protein material (or both). Intermediate differentiation stages involved synthesis of a homogeneous extra wall layer, development of necks leading to adjacent cells, and elaboration of a complex system of intracytoplasmic membranes. Late differentiation stages included further development of necks and continued elaboration of membranes. Mature heterocysts possessed a uniformly electron-dense cytoplasm that contained large numbers of closely packed membranes, some of which were arranged in lamellar stacks. Mature heterocysts lacked all of the inclusion bodies present in undifferentiated vegetative cells, but contained a number of unusual spherical inclusions of variable electron density. Cells in both narrow and wide filaments were capable of differentiating. No regular heterocyst spacing pattern was observed in the narrow filaments; the number of vegetative cells between consecutive heterocysts of any given filament varied by a factor of 10. Heterocysts developed at a variety of locations in the wide, branching filaments, although the majority of them were situated adjacent to branch points. M. laminosus displayed a marked tendency to produce sets of adjacent heterocysts or proheterocysts (or both) that were not separated from each other by vegetative cells. Groups of four or more adjacent heterocysts or proheterocysts occurred frequently in wide filaments, and in some of these filaments virtually all of the cells appeared to be capable of differentiating into heterocysts.

Cyanobacteria↗
PubMed1984

A new method for identification of heterocysts and proheterocysts in morphologically complex cyanobacteria.

A new light microscopic method for identifying heterocysts and proheterocysts in morphologically complex cyanobacteria was evaluated for reliability and usefulness. Mature heterocysts and proheterocysts could be distinguished readily from vegetative cells in 0.25 micron sections of fixed and embedded material after staining with toluidine blue. Examination by light and electron microscopy of the same specimens indicated that the staining reactions which served to differentiate these cell types were both reproducible and accurate. Light microscopic analysis of serial sections stained with toluidine blue greatly facilitated localization of heterocysts and proheterocysts in the complex, branching cyanobacterium, Mastigocladus laminosus, even when its filaments of cells were intertwined in thick mats.

Cyanobacteria↗
PubMed1983

Use of a computer-aided reconstruction system to examine the three-dimensional architecture of cyanobacteria.

A computer-aided reconstruction system was evaluated in regard to its usefulness for illustrating the three-dimensional ultrastructure of cyanobacterial (blue-green algal) cells. The system readily depicted the intracellular locations of specialized inclusion bodies. The photosynthetic thylakoid membrane system was more difficult to depict because of its intricate substructure, yet could be illustrated effectively by using procedures designed to minimize multiple overlapping of thylakoid components. By eliminating unwanted or unimportant cell structures, by examining selected portions of cells, and by rotating images to obtain maximum clarity, it was possible to produce reconstructions that effectively showed the overall three-dimensional arrangement of ultrastructural features within the cell.

Computers↗
PubMed1983

Three-dimensional ultrastructure of a unicellular cyanobacterium.

The first complete three-dimensional ultrastructural reconstruction of a cyanobacterium was accomplished with high-voltage electron microscopy and computer-aided assembly of serial sections. The precise arrangement of subcellular features within the cell body was very consistent from one cell to another. Specialized inclusion bodies always occupied specific intracellular locations. The photosynthetic thylakoid membranes entirely surrounded the central portion of the cytoplasm, thereby compartmentalizing it from the rest of the cell. The thylakoid membranes formed an interconnecting network of concentric shells, merging only at the inner surface of the cytoplasmic membrane. The thylakoids were in contact with the cytoplasmic membrane at several locations, apparently to maintain the overall configuration of the thylakoid system. These results clarified several unresolved issues regarding structure-function relationships in cyanobacteria.

Cell Compartmentation↗
PubMed1983

Effects of Iron Starvation on the Ultrastructure of the Cyanobacterium Agmenellum quadruplicatum.

The effects of iron starvation on the ultrastructure of the unicellular cyanobacterium Agmenellum quadruplicatum were studied by using thin sectioning and transmission electron microscopy. Intracellular polysaccharide began to accumulate at the onset of iron limitation. This was followed by degradation of ribosomes and (later) degradation of the thylakoid membranes, both of which were virtually absent by 200 h. The thylakoids underwent structural modifications and rearrangements before they actually began to break down. Iron starvation did not appear to affect carboxysomes or the extracellular glyocalyx. On the other hand, polyphosphate bodies may have been partially degraded, and an electrontransparent gap eventually appeared between the cell wall and the cytoplasmic membrane. All of these changes were reversed when iron was added back to 200-h starved cultures. The sequence of ultrastructural changes observed during iron starvation clearly differed from those previously reported to occur during nitrogen, phosphorous, or carbon limitation.

Journal Article↗
PubMed1983

Effects of Iron Starvation on the Physiology of the Cyanobacterium Agmenellum quadruplicatum.

The effects of iron starvation on the growth and physiology of the unicellular cyanobacterium Agmenellum quadruplicatum were studied. Uptake of iron from the medium did not occur at a constant rate. The majority of the iron was removed at two different times, when the cells were initially inoculated into the medium and after the cultures had become quite dense and had stopped growing. Iron became limiting for growth 16 h after transfer to an iron-deficient medium, but cultures retained full viability for at least 212 h. Once iron became limiting, c-phycocyanin and chlorophyll a were degraded concurrently. This was followed by an accumulation of intracellular glucose in place of the c-phycocyanin. Nitrate and nitrite reductase activities were elevated through 50 h, after which they decreased steadily. The photosynthetic unit size also increased through 50 h and then decreased. Once iron was restored to the culture medium, growth resumed. The intracellular pigment levels increased rapidly as the glucose level diminished.

Journal Article↗
PubMed1983

Light and electron microscopic studies of microorganisms growing in rotating biological contactor biofilms.

The biofilms growing in the first compartments of two rotating biological contactors used to treat municipal wastewater were examined by light and electron microscopy. The biofilms were found to contain a complex and varied microbial community that included filamentous and unicellular bacteria, protozoa, metazoa, and (possibly) bacteriophage. The predominant microorganism among these appeared to be a filamentous bacterium that was identical to Sphaerotilus in both morphological and ultrastructural characteristics. It was possible to isolate a Sphaerotilus-like bacterium from each contactor. Both the Sphaerotilus filaments and the wide variety of unicellular bacteria present tended to contain poly-beta-hydroxybutyrate inclusions, a probable indication that these organisms were removing carbon from the wastewater and storing it. The microbial population of the biofilms appeared to be metabolically active, as evidenced by the presence of microcolonies and dividing cells.

Journal Article↗
PubMed1982

Accumulation of poly-beta-hydroxybutyrate in Spirulina platensis.

Poly-beta-hydroxybutyrate has been identified in the cyanobacterium Spirulina platensis. The addition of reduced carbon compounds to the growth medium was not required for poly-beta-hydroxybutyrate accumulation. Poly-beta-hydroxybutyrate accumulated during exponential growth to 6% of the total dry weight and then decreased during the stationary phase.

Cyanobacteria↗
PubMed1980

Effects of penicillin G on mesosome-like structures in Agmenellum quadruplicatum.

Agmenellum quadruplicatum was treated with lethal doses of penicillin G (15 and 75 U/ml) and then examined by electron microscopy to observe changes that took place before lysis. Treatment for 30 min led to increases in the frequency and size of mesosome-like structures within the cells. There was a direct correlation between the magnitude of these increases and the concentration of penicillin G. The mesosome-like structures often were associated with division septa, and they resembled mesosomes reported in other cyanobacteria. It is suggested that these structures appeared and enlarged because synthesis of membrane material continued after wall (peptidoglycan) synthesis was inhibited by the drug.

Cell Membrane↗
PubMed1980

Ultrastructure of a magnetotactic spirillum.

The ultrastructure of a magnetotactic bacterium (strain MS-1) was examined by transmission, scanning, and scanning-transmission electron microscopy. The organism resembled other spirilla in general cell morphology, although some differences were detected at the ultrastructural level. Electron-dense particles within magnetotactic cells were shown by energy-dispersive X-ray analysis to be localizations containing iron. A non-magnetotactic variant of strain MS-1 lacked these novel bacterial inclusion bodies. A chain of these particles traversed each magnetotactic cell in a specific arrangement that was consistent from cell to cell, seemingly associated with the inner surface of the cytoplasmic membrane. Each particle was surrounded by an electron-dense layer separated from the particle surface by an electron-transparent region. The term "magnetosome" is proposed for the electron-dense particles with their enveloping layer(s) as found in this and other magnetotactic bacteria.

Cell Membrane↗
PubMed1979

Attachment to autoclaved soil of bacterial cells from pure cultures of soil isolates.

Pure cultures of Arthrobacter globiformis and four fresh soil isolates were incubated individually in autoclaved soil, in both the presence and absence of glucose. These bacteria grew in the soil and, except for A. globiformis, eventually attached firmly to the soil solids. Firmly attached cells were defined as those which could not be separated from the soil solids by blending combined with a series of low-speed centrifugal washings. The attachment attained by the soil isolates appeared to duplicate that of the overall bacterial population that resides naturally in unaltered, unamended soil. Cell attachment in the autoclaved-soil system was accelerated slightly by glucose, but, except for one soil isolate, several months of incubation were still required before firm attachment was complete. Electron microscopy indicated that all attached cells produced extracellular polysaccharide slimes in the autoclaved soil and that these materials appeared to connect the cells to surrounding pieces of soil debris. The actual role of polysaccharides in attachment was not clear, however, because at least one of these organisms possessed extracellular slime during the long period in which it had not yet attached to the soil.

Journal Article↗
PubMed1975

Simplified procedures for releasing and concentrating microorganisms from soil for transmission electron microscopy viewing as thin-sectioned and frozen-etched preparations.

A simplified procedure is presented for releasing and concentrating indigenous microbial cells from soil for viewing by transmission electron microscopy as thin sections or replicas of frozen-etched preparations. This procedure is compared with two others reported earlier, and their relative merits are discussed as concerns the choice of procedure for the cellular information desired from the soil. Freeze-etching showed that the cell types and size distributions for cells which have been released and concentrated from soil are in general agreement with those for cells in a crude soil slurry in which no attempt to release and concentrate cells was made. Microcolonies were present both in the crude slurry and in the discard soil debris centrifugation pellets from the cell release and concentration procedures. In contrast to the historic assumptions, these microcolonies, as well as some individual cells embedded in soil debris could not be broken up and (or) dislodged so that they would be washed from the soil. The relative numbers of these cells remaining with the soil debris, however, could not be quantitated in the present study.

Bacteria↗