D M Benoit | PubMed Health

PubMed2001

Accurate total energies without self-consistency.

We present a new way of calculating approximate but accurate total energies within the framework of density functional theory. Our technique is based on an expansion of the energy functional to second order and does not require self-consistent iterations of the total density. The functional can be minimized by using the same techniques as developed for variational density functional perturbation theory. The method is ideally suited to systems composed of weakly interacting fragments, but it can also be applied to semiconductors and insulators. We show the versatility of our approach in a variety of examples exhibiting different types of chemical bonding.

Journal Article↗

PubMed2000

Mechanism of the S-->N isomerization and aquation of the thiocyanato pentaammine cobalt(III) ion.

All of the stationary points on the potential energy surface of the S-->N isomerization and aquation of the Co(NH3)5SCN2+ ion have been investigated with ab initio quantum chemical methods. Also the corresponding anations of the Co(NH3)5OH2(3+) ion by the N and S ends of SCN- and the substitution of thiocyanate via the D mechanism have been studied. All calculations have been performed by taking into account hydration. The most favorable reaction of Co(NH3)5SCN2+ is the isomerization. It is concerted, follows the I or Id mechanism, depending on the applied criteria, and proceeds via a T-shaped transition state. The aquations of Co(NH3)5SCN2+ and Co-(NH3)5NCS2+ and the corresponding inverse reactions, the anations, all proceed via the Id mechanism. The activation energies, calculated for the isomerization and aquation, agree with experiment, and so does the difference of the activation energies for the anations by the two donors of SCN-. This energy difference reflects the disparate nucleophilicities of the N and S ends of SCN- and shows that bond making in the transition state is significant for the Id mechanism. Isomerization and aquation are two parallel reactions which proceed via two disparate transition states. The computed activation energy for the SCN- substitution via the D mechanism is the highest, and therefore, this pathway is unlikely to operate for the isomerization and aquation of Co(NH3)5SCN2+. The S-->N isomerization and the SCN- substitution via the D mechanism were furthermore computed for the free ions in the gas phase: the isomerization would require a higher activation energy and follow the Ia mechanism. The activation energy for the SCN- substitution via the D mechanism would be very high, because of the large electrostatic work which is required for the removal of an anion from a (formally) 3+ charged cation.

Journal Article↗

PubMed2000

H-densities: a new concept for hydrated molecules.

It is common to represent molecules by "ball-and-stick" models that represent static positions of atoms. However, the vibrational states of water molecules involved in hydrogen bonding have wide amplitudes, even in their ground states. Here we introduce a new representation of this wide-amplitude vibrational motion: H-density plots. These plots represent the delocalized zero-point vibrational motion of terminal hydrogen atoms of water molecules weakly bound to other molecules. They are a vibrational analogy to electron densities. Calculations of the H-densities for complexes of water with water, benzene, phenol, and DNA bases are presented. These are obtained using the quantum diffusion Monte Carlo method. Comparisons of measured and calculated rotational constants provide experimental evidence of the new concept.

Benzene↗