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D S Portman

Publications and source records attributed to D S Portman.

5 recordsLinked to original sources

The basic helix-loop-helix transcription factors LIN-32 and HLH-2 function together in multiple steps of a C. elegans neuronal sublineage.

bHLH transcription factors function in neuronal development in organisms as diverse as worms and vertebrates. In the C. elegans male tail, a neuronal sublineage clonally gives rise to the three cell types (two neurons and a structural cell) of each sensory ray. We show here that the bHLH genes lin-32 and hlh-2 are necessary for the specification of multiple cell fates within this sublineage, and for the proper elaboration of differentiated cell characteristics. Mutations in lin-32, a member of the atonal family, can cause failures at each of these steps, resulting in the formation of rays that lack fully-differentiated neurons, neurons that lack cognate rays, and ray cells defective in the number and morphology of their processes. Mutations in hlh-2, the gene encoding the C. elegans E/daughterless ortholog, enhance the ray defects caused by lin-32 mutations. In vitro, LIN-32 can heterodimerize with HLH-2 and bind to an E-box-containing probe. Mutations in these genes interfere with this activity in a manner consistent with the degree of ray defects observed in vivo. We propose that LIN-32 and HLH-2 function as a heterodimer to activate different sets of targets, at multiple steps in the ray sublineage. During ray development, lin-32 performs roles of proneural, neuronal precursor, and differentiation genes of other systems.

Amino Acid Sequence↗

YRA1, an essential Saccharomyces cerevisiae gene, encodes a novel nuclear protein with RNA annealing activity.

The complexity of eukaryotic mRNA processing suggests a need for certain factors, called RNA chaperones, that can modulate RNA secondary structure as well as the interactions between pre-mRNA and trans-acting components. To identify factors that may fulfill this role in the yeast Saccharomyces cerevisiae, we fractionated whole-cell extracts and assayed for activity that could facilitate a specific RNA-RNA annealing reaction. We detected one strong RNA annealing activity and purified it to homogeneity. This previously undescribed factor, Yra1p, is localized to the nucleus; its sequence contains one RNP-motif RNA-binding domain. The YRA1 gene contains a 766-nt intron, the second-largest identified in this organism, and Yra1p serves an essential, nonredundant function. Taken together, our findings indicate that Yra1p is likely to have an important role in S. cerevisiae nuclear pre-mRNA metabolism.

Amino Acid Sequence↗

Cell type-specific expression of hnRNP proteins.

HnRNP proteins are abundant nucleoplasmic pre-mRNA-binding proteins which have important roles in the biogenesis of mRNA. Although hnRNP proteins have been extensively characterized in cultured cell lines, little is known about their expression in animal tissues. Here, we have undertaken a systematic survey of the expression of major hnRNP proteins in mouse tissue using specific monoclonal antibodies. Immunohistochemical staining demonstrated that hnRNP proteins C, L, and U were localized to nuclei in all tissues examined. However, cytoplasmic expression of hnRNP A1, D, F/H, and K was also detected in several tissues, suggesting that these proteins have roles in the cytoplasm as well as the nucleus. Importantly, the relative amounts of different hnRNP proteins varied among cell types. This was especially striking in neuronal and reproductive cells. In the brain, certain neuronal cell types contained more hnRNP proteins than glial cells, perhaps reflecting increased levels of neuronal transcription and RNA processing. In the ovary, oocytes contained exceptionally high concentrations of hnRNP proteins as compared to follicular and stromal cells. In the testis, the expression of hnRNP proteins was generally high and was found to be tightly regulated during spermatogenesis. Specifically, hnRNP A1 was highly expressed only in early spermatogonia and absent in later stages. These findings demonstrate that hnRNP proteins do not exist in a fixed stoichiometry across different cell types. Furthermore, as the relative amounts of pre-mRNA-binding proteins (e.g., A1 and ASF/SF2) can affect alternative splicing patterns, the variations that we have observed could profoundly affect cell-specific gene expression.

3T3 Cells↗

RNA annealing activities in HeLa nuclei.

RNA-RNA base pairing plays a critical role in the interactions between pre-mRNAs and trans-acting factors during the processing of pre-mRNAs (hnRNAs) into mRNAs, and it is likely that specific factors are required to promote the annealing of RNAs. To identify particular nuclear components that have such activity, we fractionated HeLa nucleoplasm and assayed for activity which promoted the hybridization of a pre-mRNA with an antisense RNA probe complementary to 60 nucleotides (nt) encompassing the 3' splice site. At least nine major RNA annealing activities were identified and, surprisingly, eight of these copurified partially or to homogeneity with known hnRNP proteins. The activities of three of these proteins, hnRNP A1, C1 and U, were confirmed using purified recombinant proteins. Moreover, we found that the RNA binding domain alone of hnRNP C1/C2 had significant activity, indicating that this RNA annealing may result, at least partly, from chaperone activity: a direct modulation of RNA conformation by hnRNP proteins. The finding that hnRNP proteins have strong RNA annealing activity indicates that they can profoundly affect the interactions of pre-mRNAs with trans-acting factors and suggests this to be an important function of hnRNP proteins in the processing of pre-mRNAs.

Base Composition↗